mRNA_E-siliculosus-1a_M_contig96.17580.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig96.17580.1 vs. uniprot
Match: D8LQ95_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ95_ECTSI) HSP 1 Score: 586 bits (1510), Expect = 1.660e-209 Identity = 292/299 (97.66%), Postives = 295/299 (98.66%), Query Frame = 1 Query: 1 MVLGGRLSVATLLLSLSATASGFLVPSFCRGCTVRAWSSAAAADRPPSADAARRRSRLPLKKEDLPDETLRQMADAGRALKELEEEYWKSLDPDEIAIEKKCAAGLACLKAGMLEKGCEYYTSAADLSPPSSRTWPLGVVLYYLGRYEEAAVRLDTDIRSFEKQFEECATDERIWQAAAWIRGAREAGADVEQVAAALPPLPISEPNALRRTVYNMFRGGATPEDVQQVAKVGAGGIDYFGVDFFSEVFLGLYHDAHGNELEAETYILAACGNTYPNPDDLWYHTPRIHAKARNWTIPG 897 MVLGGRLSVATLLLSL ATASGFL+PSFCRGCT RAW SAAAADRPPSADAARRRSRLPLKKEDLPDETLRQMADAGRALKELEEEYWKSLDPDEIAIEKKCAAGLACLKAGMLEKGCEYYTSAADLSPPS+RTWPLGV+LYYLGRYEEAAVRLDTDIRSFEKQFEECATDERIWQAAAWIRGAREAGADVEQVAAALPPLPISEPNALRRTVYNMFRGG TPEDVQQVAKVGAGGIDYFGVDFFSEVFLGLYHDAHGNELEAETYILAACGNTYPNPDDLWYHTPRIHAKARNWTIPG Sbjct: 1 MVLGGRLSVATLLLSLPATASGFLIPSFCRGCTARAWCSAAAADRPPSADAARRRSRLPLKKEDLPDETLRQMADAGRALKELEEEYWKSLDPDEIAIEKKCAAGLACLKAGMLEKGCEYYTSAADLSPPSARTWPLGVILYYLGRYEEAAVRLDTDIRSFEKQFEECATDERIWQAAAWIRGAREAGADVEQVAAALPPLPISEPNALRRTVYNMFRGGPTPEDVQQVAKVGAGGIDYFGVDFFSEVFLGLYHDAHGNELEAETYILAACGNTYPNPDDLWYHTPRIHAKARNWTIPG 299
BLAST of mRNA_E-siliculosus-1a_M_contig96.17580.1 vs. uniprot
Match: A0A6V1TMQ8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1TMQ8_HETAK) HSP 1 Score: 78.6 bits (192), Expect = 6.520e-13 Identity = 55/212 (25.94%), Postives = 98/212 (46.23%), Query Frame = 1 Query: 250 EEEYWKSLDPDEIAIEKKCAAGLACLKAGMLEKGCEYYTSAADLSPPSSRTWPLGVVLYYLGRYEEAAVRLDTDIRSFEKQFEECATDERIWQAAAWIRGAREAGADVEQVAAALPPLPISEPNALRRTVYNMFRGGATPEDVQQVAKVGAGGIDYFGVDFFSEVFLGLYHDAHGNELEAETYILAACGNTYPNPDDLWYHTPRIHAKARNW 885 +++ W LD DE + + A ++ E Y+ A + ++ W GV+LY LG+++EA +L +IR +E FE+ AT+ERIW A+ RG D + + +L + E + + +F G ED + + + DY+ + + +LG+ +A +A+ YI +A + DD H ++H R W Sbjct: 47 DDDVWDQLDDDERQLRRNVATAKELIRMKQAEDALLYFDKAVQIKE-NAFLWQRGVLLYLLGKFDEAHDQLSRNIRHYENVFEQPATEERIWMLASEKRGDLLVVPDQQPFSISLEEEELKESRVVLKKA-ELFLAGEIGED-EVMETIERTKSDYWAC--YGQYYLGVGMEARNQMDKAQKYIRSALEVSPLKEDDAGLHMMQLHGHIRGW 253
BLAST of mRNA_E-siliculosus-1a_M_contig96.17580.1 vs. uniprot
Match: A0A6P0ZH85_9CYAN (Uncharacterized protein n=2 Tax=unclassified Sphaerospermopsis TaxID=2646443 RepID=A0A6P0ZH85_9CYAN) HSP 1 Score: 72.4 bits (176), Expect = 4.070e-11 Identity = 53/194 (27.32%), Postives = 90/194 (46.39%), Query Frame = 1 Query: 313 GLACLKAGMLEKGCEYYTSAADLSPP-SSRTWPLGVVLYYLGRYEEAAVRLDTDIRSFEKQFEECATDERIWQ--AAAWIRGAREAGADVEQVAAALPPLPISEPNALRRTVYNMFRGGATPEDVQQVAKVGAGGIDYFGVDFFSEVFLGLYHDAHGNELEAETYILAACGNTYPNPDDLWYHTPRIHAKARNW 885 G+ + G +E+ + + +A L + W G+ YY R+ E A + + D+ + EE +W+ A + G EA + V ++P + R+VY++F G T +DV V K+ +F+S ++LGLY++A GN A+ YI+ A N Y D +WY +H + R W Sbjct: 32 GMVYFQLGKIEESIQDFDTAETLDAQITPYLWQRGLSYYYAERFTEGAKQFEIDLTVNPQDVEET-----VWRYLCIARLSGVEEANNSLLTVK--------NDPRKIMRSVYDLFAGNCTNDDVLNVGKLAG-----LKGNFYSHLYLGLYYEAEGNFELAKEYIVKAADN-YKIDDYMWYLAV-VHKQVRGW 205
BLAST of mRNA_E-siliculosus-1a_M_contig96.17580.1 vs. uniprot
Match: UPI001683F6F1 (hypothetical protein n=1 Tax=Anabaena sphaerica TaxID=212446 RepID=UPI001683F6F1) HSP 1 Score: 72.0 bits (175), Expect = 5.540e-11 Identity = 53/192 (27.60%), Postives = 95/192 (49.48%), Query Frame = 1 Query: 313 GLACLKAGMLEKGCEYYTSAADL-SPPSSRTWPLGVVLYYLGRYEEAAVRLDTDIRSFEKQFEECATDERIWQAAAWIRGAREAGADVEQVAAALPPLPISEPNALRRTVYNMFRGGATPEDVQQVAKVGAGGIDYFGVDFFSEVFLGLYHDAHGNELEAETYILAACGNTYPNPDDLWYHTPRIHAKARNW 885 G+ + +E+ + + +A L S + W G+ YY R+ E A + + D+ + EE +W+ ++ AR +G V + +L P+ ++P + R+VY++F G T +DV V K+G +F++ ++LGLY ++ GN A+ YI+ A N Y D +WY +H + R W Sbjct: 32 GMVYFQLAKIEESIQDFDTAEKLDSRLTPYLWQRGLSYYYAARFAEGAKQFEIDLTVNAQDVEET-----VWR---YLCTARLSG--VTEARNSLLPVK-NDPRKIMRSVYDLFAGNCTTDDVLNVGKLGG-----LKGNFYNHLYLGLYFESEGNLELAQEYIVKAADN-YKIDDYMWYLAV-VHKQVRGW 205
BLAST of mRNA_E-siliculosus-1a_M_contig96.17580.1 vs. uniprot
Match: A0A8J4BUZ0_9CHLO (Uncharacterized protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4BUZ0_9CHLO) HSP 1 Score: 72.8 bits (177), Expect = 1.080e-10 Identity = 59/198 (29.80%), Postives = 89/198 (44.95%), Query Frame = 1 Query: 310 AGLACLKAGMLEKGCEYYTSAADLSPPSSR-TWPLGVVLYYLGRYEEAAVRLDTDIRSFEKQFEECATDERIWQAAAWIRGAREAGADVEQVAAALPPLPIS-EPNALRRTVYNMFRGGATPEDVQQVAKVGAGGIDYFGVD-FFSEVFLGLYHDAHGNELEAETYILAACGNTYPN-PDDLWYHTPRIHAKARNWTI 891 +G+ + +E E + +L+P W G+ LYYLGRY E A + D+ T+E IW ++ A+ G D A + L + +P + R Y FR G P AK+ A D G D F+ +++GL+H+AHGN EA+ I+AA Y D R+H + RNW + Sbjct: 111 SGMNKFRLNQVEASVEDFDRVIELAPQMRPYMWQRGLSLYYLGRYAEGAEQFRVDVAVNPND-----TEESIWT---FLCEAQMVGPDQ----ARMQFLEVGRDPRPVMRAAYECFRTGELP------AKIMAQVSDNGGHDTFYGLLYVGLWHEAHGNATEAKKAIVAAVQTPYARLSGDYMASLARVHCQRRNWEL 290
BLAST of mRNA_E-siliculosus-1a_M_contig96.17580.1 vs. uniprot
Match: A0A7S3FUV3_9CHLO (Hypothetical protein n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S3FUV3_9CHLO) HSP 1 Score: 71.2 bits (173), Expect = 1.100e-10 Identity = 57/198 (28.79%), Postives = 93/198 (46.97%), Query Frame = 1 Query: 310 AGLACLKAGMLEKGCEYYTSAADLSPPSS-RTWPLGVVLYYLGRYEEAAVRLDTDIRSFEKQFEECATDERIWQAAAWIRGAREAGADVEQVAAALPPLPIS-EPNALRRTVYNMF--RGGATPEDVQQVAKVGAGGIDYFGVDFFSEVFLGLYHDAHGNELEAETYILAACGNTYP-NPDDLWYHTPRIHAKARNWT 888 +G+ G +E + A DL P R W G+ LYY G YE+AA + D+ T+E +W A++ AR G+ A L + +P L RTVY++F +G + P ++ +VA+ D +F+S +++ L+H++ GNE A+ Y+L A Y D R+H + R W+ Sbjct: 29 SGMRKFLDGDVEGSVSDFDRAIDLDPSQKPRLWQRGLSLYYAGEYEKAAEQFRVDVSLNPND-----TEEALW---AYLSEARLVGS----AKAKEQFLKVGKDPRPLLRTVYDVFGRQGLSDPSEILEVAESAKSAHD----EFYSLLYVALWHESEGNEGVAKKYMLQAIDTRYALQSGDYMAGLARVHCQVRKWS 210
BLAST of mRNA_E-siliculosus-1a_M_contig96.17580.1 vs. uniprot
Match: A0A1Z4SDC6_9NOSO (Uncharacterized protein n=2 Tax=unclassified Nostoc TaxID=2593658 RepID=A0A1Z4SDC6_9NOSO) HSP 1 Score: 70.9 bits (172), Expect = 1.400e-10 Identity = 51/164 (31.10%), Postives = 80/164 (48.78%), Query Frame = 1 Query: 403 WPLGVVLYYLGRYEEAAVRLDTDIRSFEKQFEECATDERIWQAAAWIR--GAREAGADVEQVAAALPPLPISEPNALRRTVYNMFRGGATPEDVQQVAKV-GAGGIDYFGVDFFSEVFLGLYHDAHGNELEAETYILAACGNTYPNPDDLWYHTPRIHAKARNW 885 W G+ YY R+ E A + + D+ + EE +W+ R G +EA + V ++P + +TVYN++ G TP+DV V K+ G G +F+S ++LGLY++A N A+ YI+ A N Y D +WY ++H K R W Sbjct: 63 WQRGLSYYYAERFAEGAQQFEIDLTVNAQDVEET-----VWRYLCMARLVGVKEARNSLLTVK--------NDPRRIMQTVYNLYAGNCTPDDVLTVGKLEGDRG------NFYSHLYLGLYYEAENNLDLAQEYIVKAADN-YKIDDYMWY-LAQVHKKLRAW 205
BLAST of mRNA_E-siliculosus-1a_M_contig96.17580.1 vs. uniprot
Match: A0A6M0EVX6_9CYAN (Uncharacterized protein n=4 Tax=Cyanobacteria TaxID=1117 RepID=A0A6M0EVX6_9CYAN) HSP 1 Score: 70.5 bits (171), Expect = 1.900e-10 Identity = 52/194 (26.80%), Postives = 88/194 (45.36%), Query Frame = 1 Query: 313 GLACLKAGMLEKGCEYYTSAADLSPPS-SRTWPLGVVLYYLGRYEEAAVRLDTDIRSFEKQFEECATDERIWQ--AAAWIRGAREAGADVEQVAAALPPLPISEPNALRRTVYNMFRGGATPEDVQQVAKVGAGGIDYFGVDFFSEVFLGLYHDAHGNELEAETYILAACGNTYPNPDDLWYHTPRIHAKARNW 885 G+A K +++ + A L+P W G+ YY R+EE A + D+ + EE +W+ A ++G EA + V ++P ++ R+VY +F G T EDV V + + F+S +++GL+++A + + A YI+ A N Y D +W H R+H R W Sbjct: 32 GMANFKLAKIDESIRDFDHAEKLNPKVLPYLWQRGLSYYYAERFEEGARQFQLDLSVNPQDVEET-----VWRYLCIARLKGVAEARNSLLAVK--------NDPRSVMRSVYGLFAGNCTREDVLAVGEK-----ESIRGKFYSNLYIGLHYEAQADSIHAREYIVRAA-NDYQLDDYMW-HLARVHQALRGW 205
BLAST of mRNA_E-siliculosus-1a_M_contig96.17580.1 vs. uniprot
Match: A0A252EBR8_9NOSO (Uncharacterized protein n=3 Tax=unclassified Nostoc TaxID=2593658 RepID=A0A252EBR8_9NOSO) HSP 1 Score: 68.9 bits (167), Expect = 6.480e-10 Identity = 54/193 (27.98%), Postives = 93/193 (48.19%), Query Frame = 1 Query: 313 GLACLKAGMLEKGCEYYTSAADLSPP-SSRTWPLGVVLYYLGRYEEAAVRLDTDIRSFEKQFEECATDERIWQAAAWIRGAREAGADVEQVAAALPPLPISEPNALRRTVYNMFRGGATPEDVQQVAKV-GAGGIDYFGVDFFSEVFLGLYHDAHGNELEAETYILAACGNTYPNPDDLWYHTPRIHAKARNW 885 G+ + +++ + + +A L P W G+ YY R+ E A + D+ + EE +W+ ++ AR +G VE +L + ++P + R+VY+++ G TP+DV V K G G +F+S ++LGLY++A N A+ YI+ A N Y D +WY ++H R W Sbjct: 32 GMVNFQLAKIDESIQDFDTAEQLDPRLKPYLWQRGLSYYYAERFAEGAQQFKIDLTVNAQDVEET-----VWR---YLCIARLSG--VESARNSLLTVK-NDPRRIMRSVYDLYAGNCTPDDVLNVGKSEGVKG------NFYSHLYLGLYYEAENNLELAQEYIVKAADN-YKIDDYMWY-LAQVHKNLRKW 205
BLAST of mRNA_E-siliculosus-1a_M_contig96.17580.1 vs. uniprot
Match: A0A8J4EVV0_9CHLO (Uncharacterized protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4EVV0_9CHLO) HSP 1 Score: 69.3 bits (168), Expect = 1.720e-9 Identity = 52/196 (26.53%), Postives = 81/196 (41.33%), Query Frame = 1 Query: 310 AGLACLKAGMLEKGCEYYTSAADLSPPSSR-TWPLGVVLYYLGRYEEAAVRLDTDIRSFEKQFEECATDERIWQ--AAAWIRGAREAGADVEQVAAALPPLPISEPNALRRTVYNMFRGGATPEDVQQVAKVGAGGIDYFGVDFFSEVFLGLYHDAHGNELEAETYILAACGNTYPN-PDDLWYHTPRIHAKARNW 885 +G+ + +E E + L+P W G+ LYYLGRY E A + D+ T+E IW A + G +A +V +P + R Y FR G P+ + G ++G+ +++GL+H+AHG+ EA+ I AA Y D R+H + RNW Sbjct: 120 SGMDKFRRNQVEASVEDFDRVVQLAPQMRPYMWQRGLSLYYLGRYAEGAEQFRVDVAVNPND-----TEESIWTFLCEAQMVGPEQARMQFLEVG--------RDPRPVMRAAYECFRTGELPDKIMAQVSDNGGHDTFYGL-----LYVGLWHEAHGDTTEAKKAITAAVQTPYARLSGDYMASLARVHCQRRNW 297 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig96.17580.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig96.17580.1 >prot_E-siliculosus-1a_M_contig96.17580.1 ID=prot_E-siliculosus-1a_M_contig96.17580.1|Name=mRNA_E-siliculosus-1a_M_contig96.17580.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=300bp MVLGGRLSVATLLLSLSATASGFLVPSFCRGCTVRAWSSAAAADRPPSADback to top mRNA from alignment at E-siliculosus-1a_M_contig96:254024..257367- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig96.17580.1 ID=mRNA_E-siliculosus-1a_M_contig96.17580.1|Name=mRNA_E-siliculosus-1a_M_contig96.17580.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=3344bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:254024..257367- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig96:254024..257367- >mRNA_E-siliculosus-1a_M_contig96.17580.1 ID=mRNA_E-siliculosus-1a_M_contig96.17580.1|Name=mRNA_E-siliculosus-1a_M_contig96.17580.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1800bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:254024..257367- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |