mRNA_E-siliculosus-1a_M_contig96.17575.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig96.17575.1 vs. uniprot
Match: A0A6H5KKT3_9PHAE (U1-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKT3_9PHAE) HSP 1 Score: 386 bits (991), Expect = 1.100e-130 Identity = 228/232 (98.28%), Postives = 230/232 (99.14%), Query Frame = 2 Query: 50 MSKDLGYRQVKNVESRRTWDRDYYEAKAKERIEQGDDYQEKDEGGPARRSQKEEFQPAAAGAAGPAGSARAYLKTRERKVDLSSKLGKTQVVTAASTPSQQGGWYCEICKCGLKDSINYLDHINGKKHQRELGYSMRVERSTVSQVKDRLKMHKQREEDRISGALKKPSAEDEFDTRVREAEDNEXXXXXXXXXXXXXXXXXXXXXXXXMEFQDPDMAAMMGFGGFGGGSKK 745 MSKDLGY+QVKNVESRRTWDRDYYEAKAKERIEQGDDYQEKDEG PARRSQKEEFQPAA GAAGPAGSARAYLKTRERKVDLSSKLGKTQVVTAASTPSQQGGWYCEICKCGLKDSINYLDHINGKKHQRELGYSMRVERSTVSQVKDRLKMHKQREEDRISGALKKPSAEDEFDTRVREAEDNEXXXXXXXXXXXXXXXXXXXXXXXXMEFQDP+MAAMMGFGGFGGGSKK Sbjct: 1 MSKDLGYKQVKNVESRRTWDRDYYEAKAKERIEQGDDYQEKDEGAPARRSQKEEFQPAAPGAAGPAGSARAYLKTRERKVDLSSKLGKTQVVTAASTPSQQGGWYCEICKCGLKDSINYLDHINGKKHQRELGYSMRVERSTVSQVKDRLKMHKQREEDRISGALKKPSAEDEFDTRVREAEDNEXXXXXXXXXXXXXXXXXXXXXXXXMEFQDPEMAAMMGFGGFGGGSKK 232
BLAST of mRNA_E-siliculosus-1a_M_contig96.17575.1 vs. uniprot
Match: A0A835ZCC8_9STRA (U1-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCC8_9STRA) HSP 1 Score: 182 bits (463), Expect = 2.710e-51 Identity = 141/232 (60.78%), Postives = 166/232 (71.55%), Query Frame = 2 Query: 53 SKDLGYRQVKNVESRRTWDRDYYEAKAKERIEQGDDYQEKDEGGPARRSQKEEFQPAAAGAAGPAGSARAYLKTRERKVDLSSKLGKTQVVTAASTPSQQGGWYCEICKCGLKDSINYLDHINGKKHQRELGYSMRVERSTVSQVKDRLKMHKQREED--RISGALKKPSAEDEFDTRVREAEDNEXXXXXXXXXXXXXXXXXXXXXXXXMEFQDPDMAAMMGFGGFGGGSK 742 S DLG +QV NV RR+WD + YE KAKER+E+GD+ +E KEEFQPA GA GPAGS RAYLK R KVDL S+L KTQV+T+A+ S QGG++CE+CKC LKDSI YLDHINGKKHQR LG+SMRVERS+V VK++L + R ED + SGA +K SA E++ R+ E XXXXXXXXXXXXXXXXXXXXXXXX AAMMGFGGF GG + Sbjct: 7 SDDLGDKQVSNV-VRRSWDVELYEKKAKERLERGDEVEEARPASSKAALNKEEFQPAPDGAQGPAGSRRAYLKARTEKVDLESRLHKTQVITSAAASSSQGGYWCEVCKCLLKDSIAYLDHINGKKHQRALGFSMRVERSSVGSVKEKLDKLRARAEDAAKASGAPRK-SAVQEYEERLAEYAAX-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAMMGFGGFSGGKR 235
BLAST of mRNA_E-siliculosus-1a_M_contig96.17575.1 vs. uniprot
Match: A0A7S2WR40_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WR40_9STRA) HSP 1 Score: 168 bits (425), Expect = 8.270e-46 Identity = 124/218 (56.88%), Postives = 157/218 (72.02%), Query Frame = 2 Query: 95 RRTWDRDYYEAKAKERI--EQGDDYQEKDEGGPARRSQKEEFQPAAAGAAGPAGSARAYLKTRERKVDLSSKLGKTQVVTAASTPSQQGGWYCEICKCGLKDSINYLDHINGKKHQRELGYSMRVERSTVSQVKDRLKMHKQREEDRISGALKKPSAEDEFDTRVREAEDNEXXXXXXXXXXXXXXXXXXXXXXXXMEFQDPDMAAMMGFGGFGGGSK 742 RRTWD YE KA+ER+ E+G + + P R ++EF+ A AAGPAGSARA+L R R + L GKTQ++ + GGWYC++C+C LKDS NYLDHINGKKHQR+LG+SMRVERSTV QV +R K+ K+R+ED +S A + P+A + ++ R+ A++ EXXXXXXXXXXXXXXXXXXXXXX ME DPD+ A MGFGGFGGG+K Sbjct: 13 RRTWDVKEYEKKAQERLAREEGGIVEGDVDDRPVR--DRDEFRRAEDQAAGPAGSARAFLNNRNRALGLEKAAGKTQIIADNGLRQKGGGWYCDVCECLLKDSSNYLDHINGKKHQRKLGFSMRVERSTVGQVSERFKLAKKRKEDEMSVATR-PTAIEAYEQRIAAAQEEEXXXXXXXXXXXXXXXXXXXXXX--MEGMDPDLMAAMGFGGFGGGAK 225
BLAST of mRNA_E-siliculosus-1a_M_contig96.17575.1 vs. uniprot
Match: W7U2Z2_9STRA (Zinc finger matrin-type protein 2 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U2Z2_9STRA) HSP 1 Score: 157 bits (396), Expect = 1.710e-41 Identity = 104/225 (46.22%), Postives = 134/225 (59.56%), Query Frame = 2 Query: 83 NVESRRTWDRDYYEAKAKERIEQ---GDDYQEKDEGGPARRSQKEEFQPAAAGAAGPAGSARAYLKTRERKVDLSSKLGKTQVVTAASTPSQQGGWYCEICKCGLKDSINYLDHINGKKHQRELGYSMRVERSTVSQVKDRLKMHKQREEDRISGALKKPSAEDEFDTRVREAEDNEXXXXXXXXXXXXXXXXXXXXXXXXMEFQ-------DPDMAAMMGFGGF 727 NVE RRTWD +++E AKER+E+ GD ++K P ++EEFQ A AGAAGP GS RAYLK RE + L K+GK QVVT +S P QQGG++C+IC+C LKDS+ YLDHINGKKHQ+ LGYSMRVER V +VK+RL K+RE+++ + E D ++ E +E E DP+MAA+MGFGGF Sbjct: 17 NVE-RRTWDLEHFEKIAKERLEKEASGDVEKKK----PGFVRKREEFQAAEAGAAGPEGSKRAYLKHREADLGLEEKVGKIQVVTGSSAPHQQGGYWCDICQCLLKDSMAYLDHINGKKHQKALGYSMRVERVGVDRVKERLNALKRREDEKKKAGPR----ESAIDAYQKKLEKDEAIKAQWKEARKEARINVIQRATKEEESTVEEEGGVDPEMAALMGFGGF 232
BLAST of mRNA_E-siliculosus-1a_M_contig96.17575.1 vs. uniprot
Match: W2PLF3_PHYPN (U1-type domain-containing protein n=11 Tax=Phytophthora TaxID=4783 RepID=W2PLF3_PHYPN) HSP 1 Score: 152 bits (385), Expect = 8.740e-40 Identity = 123/236 (52.12%), Postives = 154/236 (65.25%), Query Frame = 2 Query: 77 VKNVESRRTWDRDYYEAKAKERIEQGDDYQEKDEGGPARRSQKEEFQPAAAGAAGPAGSARAYLKTRERKVDLSSKLGKTQVVTAASTPSQQGGWYCEICKCGLKDSINYLDHINGKKHQRELGYSMRVERSTVSQVKDRLKMHKQREEDRISGALKKPSAEDEFDTRVREAEDNEXXXXXXXXXXXXXXXXXXXXXXXXMEFQ--------------DPDMAAMMGFGGFGGGSK 742 V NV +R+TWDR +YE A+ R E EK+E +S KEEFQ A GAAGPAGSARA+LK R K+ L S +G +VV + S+ GG+YCE+C+CGLKDS+ YLDHINGKKH R+LGYSMRVERSTV QVK+RL+ +R+ D + KK A ++++ +++ AE+ XXXXXXXXXXXXXXXXXXX D +M AMMGFGGFGG K Sbjct: 13 VANV-TRQTWDRAHYEKLAQLRAE---GKLEKEETKKVIKSTKEEFQAANEGAAGPAGSARAFLKARTNKMSLESSVGTVKVVKSDDV-SKNGGYYCEVCECGLKDSVAYLDHINGKKHLRKLGYSMRVERSTVDQVKNRLQSASKRKWDPLMA--KKLDAMEDYEKKLKAAEEEXXXXXXXXXXXXXXXXXXXXALEQDKSDDADKKPEAADEALDADAEMMAMMGFGGFGGSKK 241
BLAST of mRNA_E-siliculosus-1a_M_contig96.17575.1 vs. uniprot
Match: A0A8J5JCN4_9STRA (zf-C2H2_jaz domain-containing protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5JCN4_9STRA) HSP 1 Score: 151 bits (382), Expect = 1.480e-39 Identity = 112/226 (49.56%), Postives = 138/226 (61.06%), Query Frame = 2 Query: 77 VKNVESRRTWDRDYYEAKAKERIEQGDDYQEKDEGGPARRSQKEEFQPAAAGAAGPAGSARAYLKTRERKVDLSSKLGKTQVVTAASTPSQQGGWYCEICKCGLKDSINYLDHINGKKHQRELGYSMRVERSTVSQVKDRLKMHKQREEDRISGALKKPSAEDEFDTRVREAEDNEXXXXXXXXXXXXXXXXXXXXXXXXMEFQDPD----MAAMMGFGGFGGGSK 742 V NV +R+TWDR +YE A+ R E EK+E A +S KEEFQ A GAAGPAGSARA+LK R K+ L + +G +VV + S+ GG+YCE+C+CGLKDS+ YLDHINGKKH R+LGYSMRVERSTV QVK+RL+ ++ KK A +E + RV+ XXXXXXXX + PD M AMMGFGGFGG K Sbjct: 16 VANV-ARQTWDRAHYEKLAQLRAE---GQLEKEETKKAIKSSKEEFQSANEGAAGPAGSARAFLKARTAKMSLETSVGTVKVVKSEDL-SKNGGYYCEVCECGLKDSVAYLDHINGKKHLRKLGYSMRVERSTVDQVKNRLQNYE-----------KKLKAAEEEEARVKXXXXXXXXXXXXXXDTLDQDKNDDADKKPEAADEVPDADAEMMAMMGFGGFGGSKK 225
BLAST of mRNA_E-siliculosus-1a_M_contig96.17575.1 vs. uniprot
Match: A0A3R7GK79_9STRA (U1-type domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7GK79_9STRA) HSP 1 Score: 150 bits (379), Expect = 6.850e-39 Identity = 111/238 (46.64%), Postives = 143/238 (60.08%), Query Frame = 2 Query: 77 VKNVESRRTWDRDYYEAKAKERIEQGDDYQEKDEGGPARRSQKEEFQPAAAGAAGPAGSARAYLKTRERKVDLSSKLGKTQVVTAASTPSQQGGWYCEICKCGLKDSINYLDHINGKKHQRELGYSMRVERSTVSQVKDRLKMHKQREEDRISGALKKPSAEDEFDTRVREAEDNEXXXXXXXXXXXXXXXXXXXXXXXXMEFQ----------------DPDMAAMMGFGGFGGGSK 742 V NV +R+TWDR++YE AK R E E++E +S KEEFQ A AAGPAGSARA+LK R K+ L + +G +VV + S+ GG+YCE+C+CGLKDS+ YLDHINGKKH R+LGYSMRVERSTV QVK RL+ +R+ D + KK +++ +V+EAE+ E XXXXXXXX + D +M +MMGFGGFGG K Sbjct: 13 VANV-ARQTWDREHYEKLAKLRAE---GQLEQEETKKVIKSSKEEFQAADDRAAGPAGSARAFLKARTSKMSLENSVGTVKVVKSDDL-SKNGGYYCEVCECGLKDSVAYLDHINGKKHLRKLGYSMRVERSTVDQVKSRLQSASKRKWDPLM--TKKLDTMADYEKKVKEAEEEEARIKRQKXXXXXXXXLGDQQTSEVKSEKATDKKPEAEDEAVPDADTEMMSMMGFGGFGGSKK 243
BLAST of mRNA_E-siliculosus-1a_M_contig96.17575.1 vs. uniprot
Match: A0A0P1ATE8_PLAHL (Zinc finger matrin-type protein 2 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ATE8_PLAHL) HSP 1 Score: 149 bits (377), Expect = 4.610e-38 Identity = 103/232 (44.40%), Postives = 132/232 (56.90%), Query Frame = 2 Query: 77 VKNVESRRTWDRDYYEAKAKERIEQGDDYQEKDEGGPARRSQKEEFQPAAAGAAGPAGSARAYLKTRERKVDLSSKLGKTQVVTAASTPSQQGGWYCEICKCGLKDSINYLDHINGKKHQRELGYSMRVERSTVSQVKDRLKMHKQREEDRISGALKKPSAEDEFDTRVREAEDNEXXXXXXXXXXXXXXXXXXXXXXXX----------MEFQDPDMAAMMGFGGFGGGSK 742 V NV R+TWDR +YE A+ R E G EK+ S KEEFQ A AAGPAGSARA+LK R K+ L + +G +VV + S+ G+YCE+C+C LKDS+ YLDHINGKKH R+LGYSMRVERSTV QVKDRL+ +R+ D + KK A +E++ +++ AE+ E + D +M AMMGFGGFGG K Sbjct: 66 VSNV-VRQTWDRAHYEKLAQLRAEGG---VEKETTKKVIHSSKEEFQTADESAAGPAGSARAFLKARTAKMSLETSVGTVKVVKSDEL-SKNSGYYCEVCECSLKDSVAYLDHINGKKHLRKLGYSMRVERSTVDQVKDRLQSAAKRKWDPLM--TKKLDAMEEYEKKLKAAEEAEICLKRQKKEQRKAKKCESEDLSQDRVTAEETVDVVSESDAEMMAMMGFGGFGGSKK 290
BLAST of mRNA_E-siliculosus-1a_M_contig96.17575.1 vs. uniprot
Match: A0A1Z5KJY6_FISSO (U4/U6.U5 tri-snRNP component SNU23 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KJY6_FISSO) HSP 1 Score: 148 bits (373), Expect = 9.880e-38 Identity = 126/263 (47.91%), Postives = 160/263 (60.84%), Query Frame = 2 Query: 41 TATMSKDLGYRQVKNVESRRTWDRDYYEAKAKERI---EQGDDYQEKDEGGPARR---------SQKEEFQPAAAGAAGPAGSARAYLKTRERKVDLSSKLGKTQVVTAASTPSQQG-GWYCEICKCGLKDSINYLDHINGKKHQRELGYSMRVERSTVSQVKDRLKM-------HKQREEDRISGALKKPSAEDEFDTRVREAED---------NEXXXXXXXXXXXXXXXXXXXXXXXXMEFQDPDMAAMMGFGGFGGGSK 742 T TM+ +L Y+QV NV SRR WD + YE +AKER E+ +E + G S KEEFQ A AAGP GS RA+L+ R++ +DL SK+G +++V+A + + G GW+C++C C LKDS+ YLDHINGKKHQR+LG++MRVERST QV DRLK K+ D I + ++DE R RE + XXXXXXXXXXXXXXXXXX E DP+MAAMMGF GFGGG+K Sbjct: 6 TITMASNLNYKQVANV-SRRKWDVESYEQRAKERQAREEEAGYLEETRKKGTDNSTANAKNEDDSNKEEFQAAPPDAAGPEGSKRAFLRARQQAIDLESKVGTSEMVSADNAVVKSGIGWHCKVCDCFLKDSLTYLDHINGKKHQRKLGFTMRVERSTKDQVLDRLKSISQTSKSQKETSLDDIVDLNELVQSKDEALQREREEKXXXXXXXXAMENMRXXXXXXXXXXXXXXXXXXEEVDFEGIDPEMAAMMGFSGFGGGNK 267
BLAST of mRNA_E-siliculosus-1a_M_contig96.17575.1 vs. uniprot
Match: UPI000A2A692D (zinc finger matrin-type protein 2 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A692D) HSP 1 Score: 144 bits (363), Expect = 4.490e-37 Identity = 100/221 (45.25%), Postives = 129/221 (58.37%), Query Frame = 2 Query: 80 KNVESRRTWDRDYYEAKAKERIEQGDDYQEKDEGGPARRSQKEEFQPAAAGAAGPAGSARAYLKTRERKVDLSSKLGKTQVVTAASTPSQQGGWYCEICKCGLKDSINYLDHINGKKHQRELGYSMRVERSTVSQVKDRLKMHKQREEDRISGALKKPSAEDEFDTRVREAEDNEXXXXXXXXXXXXXXXXXXXXXXXXMEFQDPDMAAMMGFGGFGGGSK 742 KN RRTWD+D YE KAKER+++ +D R + + R LK RE +VDL S LGK+ V+T +ST SQ GG+YC +C C +KDSIN+LDHINGKKHQR LG SMRVERST+ QVK R +++K++ E+ +K +A+ + D RV ++ EXXXXXXX + DPDMAAMMGF GFG K Sbjct: 8 KNDNFRRTWDKDEYEKKAKERLQELEDXXXXXXXXXRREAPIK----------------RKLLKKREYEVDLESNLGKSVVITKSSTMSQSGGYYCNVCDCIVKDSINFLDHINGKKHQRNLGMSMRVERSTLDQVKKRFELNKRKREE------EKQTADYDLDERVAILKEEEXXXXXXXKDYKREKKLKTQDQDSGV---DPDMAAMMGFSGFGSSKK 203 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig96.17575.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig96.17575.1 >prot_E-siliculosus-1a_M_contig96.17575.1 ID=prot_E-siliculosus-1a_M_contig96.17575.1|Name=mRNA_E-siliculosus-1a_M_contig96.17575.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=233bp MSKDLGYRQVKNVESRRTWDRDYYEAKAKERIEQGDDYQEKDEGGPARRSback to top mRNA from alignment at E-siliculosus-1a_M_contig96:205222..208896+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig96.17575.1 ID=mRNA_E-siliculosus-1a_M_contig96.17575.1|Name=mRNA_E-siliculosus-1a_M_contig96.17575.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=3675bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:205222..208896+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig96:205222..208896+ >mRNA_E-siliculosus-1a_M_contig96.17575.1 ID=mRNA_E-siliculosus-1a_M_contig96.17575.1|Name=mRNA_E-siliculosus-1a_M_contig96.17575.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1398bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:205222..208896+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |