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Homology
BLAST of mRNA_E-siliculosus-1a_M_contig96.17573.1 vs. uniprot
Match: A0A6H5L2B2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2B2_9PHAE) HSP 1 Score: 352 bits (904), Expect = 1.650e-113 Identity = 201/226 (88.94%), Postives = 204/226 (90.27%), Query Frame = 3 Query: 102 MYTRKQRWRRTRTRKQAWGDLPPELLDAMLAAGGGGMPKSVSWDHSYAAGLKIRADRAAEVAHRAAAEDSKLKAAXXXXXXXXXXXXXVEVSIPRSVSCSSLGPKRTLFARTSSSKDELGAAGGGVRRGSSAITAAQHRRRMLPHRRGVSFNTQVKMVLIPKREEFSELERVKLWWGREDYSQFRQVLIDWKRANAHRISHSDNILSINLSDIDEEEESPTGQDHS 779
MYTRKQRWRRTRTRKQAWGDLPPELLDAMLAAGGG MPKSVSWDHSYAA LKIRADRAAEVAHRAAAEDSKL+AAXXXXXXXXXXXX VEVSIPRS SCSSLGPKRTLF RTSSSKDELGAA H+RRML HRRGVSFNTQVKMVLIPKREEFSELERVKLWWGREDY+QFRQVLIDWKRANAHRISHSDNILSINLSDIDEEEES TGQDHS
Sbjct: 1 MYTRKQRWRRTRTRKQAWGDLPPELLDAMLAAGGGRMPKSVSWDHSYAARLKIRADRAAEVAHRAAAEDSKLRAAXXXXXXXXXXXX-VEVSIPRSASCSSLGPKRTLFPRTSSSKDELGAAXXXXXXXXXXXXXXXHKRRMLSHRRGVSFNTQVKMVLIPKREEFSELERVKLWWGREDYAQFRQVLIDWKRANAHRISHSDNILSINLSDIDEEEESATGQDHS 225
BLAST of mRNA_E-siliculosus-1a_M_contig96.17573.1 vs. uniprot
Match: A0A835Z1A2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1A2_9STRA) HSP 1 Score: 102 bits (254), Expect = 1.030e-21 Identity = 45/75 (60.00%), Postives = 63/75 (84.00%), Query Frame = 3 Query: 540 RGVSFNTQVKMVLIPKREEFSELERVKLWWGREDYSQFRQVLIDWKRANAHRISHSDNILSINLSDIDEEEESPT 764
R V+F+ +V++VLIPKR+E ++ +R +LWW R+DY++FRQVLIDWK NA +IS +DNILSINLSD+D E++ PT
Sbjct: 107 RAVAFDPRVQVVLIPKRDEINDFDRYRLWWSRDDYAKFRQVLIDWKTINADKISPTDNILSINLSDLDAEDDEPT 181
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 0 |
| Cds size | 678 |
| Model size | 780 |
| Exons | 2 |
| Ec32 ortholog | Ec-26_005580.1 |
| Ec32 ortholog description | Hypothetical protein |
| Hectar predicted targeting category | other localisation |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622936530.4377396-CDS-E-siliculosus-1a_M_contig96:187297..187513 | 1622936530.4377396-CDS-E-siliculosus-1a_M_contig96:187297..187513 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig96 187298..187513 - |
| 1696251118.8634531-CDS-E-siliculosus-1a_M_contig96:187297..187513 | 1696251118.8634531-CDS-E-siliculosus-1a_M_contig96:187297..187513 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig96 187298..187513 - |
| 1622936530.5081263-CDS-E-siliculosus-1a_M_contig96:191687..192149 | 1622936530.5081263-CDS-E-siliculosus-1a_M_contig96:191687..192149 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig96 191688..192149 - |
| 1696251118.877977-CDS-E-siliculosus-1a_M_contig96:191687..192149 | 1696251118.877977-CDS-E-siliculosus-1a_M_contig96:191687..192149 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig96 191688..192149 - |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622936530.526055-UTR-E-siliculosus-1a_M_contig96:192149..192250 | 1622936530.526055-UTR-E-siliculosus-1a_M_contig96:192149..192250 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig96 192150..192250 - |
| 1696251118.8902192-UTR-E-siliculosus-1a_M_contig96:192149..192250 | 1696251118.8902192-UTR-E-siliculosus-1a_M_contig96:192149..192250 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig96 192150..192250 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig96.17573.1 >prot_E-siliculosus-1a_M_contig96.17573.1 ID=prot_E-siliculosus-1a_M_contig96.17573.1|Name=mRNA_E-siliculosus-1a_M_contig96.17573.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=226bp
MYTRKQRWRRTRTRKQAWGDLPPELLDAMLAAGGGGMPKSVSWDHSYAAG
LKIRADRAAEVAHRAAAEDSKLKAAAAAAAVAAAKGKGVEVSIPRSVSCS
SLGPKRTLFARTSSSKDELGAAGGGVRRGSSAITAAQHRRRMLPHRRGVS
FNTQVKMVLIPKREEFSELERVKLWWGREDYSQFRQVLIDWKRANAHRIS
HSDNILSINLSDIDEEEESPTGQDHS back to topmRNA from alignment at E-siliculosus-1a_M_contig96:187298..192250- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_M_contig96.17573.1 ID=mRNA_E-siliculosus-1a_M_contig96.17573.1|Name=mRNA_E-siliculosus-1a_M_contig96.17573.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=4953bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:187298..192250- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
AAAAGATTGTTTTGTCCATGTAGGCAGCTGCTCGTCGCACACCAGGAAGG
TTCGGAGGGTTCGTTCAGCGCTACTAAACAACCAGGCTAGGCGGCAGCAG
CATGTACACGAGGAAACAGAGATGGAGAAGGACTCGGACGCGCAAGCAGG
CCTGGGGCGACCTTCCCCCAGAGCTTCTAGACGCGATGCTCGCGGCCGGC
GGCGGCGGTATGCCCAAGTCCGTTTCCTGGGACCACAGCTACGCCGCGGG
GCTGAAGATTCGAGCAGACAGGGCGGCCGAGGTAGCGCACCGGGCAGCGG
CCGAGGACTCCAAGCTCAAAGCGGCGGCGGCGGCGGCGGCGGTGGCGGCC
GCAAAGGGCAAGGGGGTCGAGGTCAGCATCCCGCGGTCGGTGTCCTGCTC
GTCCCTCGGACCGAAGCGGACTCTGTTCGCCCGAACCTCGTCCTCCAAGG
ATGAGCTTGGGGCCGCGGGGGGCGGCGTCAGGAGAGGTAGCAGCGCGATC
ACAGCGGCTCAGCACAGGCGGCGCATGCTGCCGCACCGGAGAGGCGTGAG
CTTTAACACACAGGTGGGTGCTAGCTTGGCTCTCGAGGTAGATTCGGGGC
AGCTACTGAGCTGTTGGTTCATTACTGTGTTTTCCCCTCCTCGTACACGA
AGTAGTGATTCGTTTTTATGATCAGCACCATTCGGTCAGGTGACGGCTCT
CCCTAAAACAAAGACTAGCTTATACTGCTGTCGACGACGCTCTATGGTTC
ATGCTGCGGAGGAAAGGGGGCCATGAGGTGGTGGCGTGGTCCATGTCTGT
GTGTTCATGTTGTCCCGTCAACAGCTGTCTCTTGGTTGATTCTCGCATTC
TCTCTCTGGAACTTTCAGCCAAAGATGACCCCCAGATGCTCTCATCATCG
ACTTTTTTATTCTTTTTCATGTGTGACGAAAGCAGTTGCAAGCGGCGCAA
CCGCGCAATGCTTGCTTGGAAGTTCGGGTGTGGAACACTGCTGGCTAGCG
ACACGCCTGCTTTACGGGCTTCATCTGTGACACCCCGCTTTTCGTGTTCC
ATGGCGAACAGCTCCACCCCAAATACAAGAATAAAACACCGAGGGAAATC
TACTCACAGGGTTCAGCCAAACAGAACAGAACCTTGGTGCGGTGTCCGCT
GAAAACGTTTCCTGAGGACCCTCACACCCCCACCCTACATATCAAGATCT
CCCACCTCTAATGGTTGATTTCATGGTAACTGGGTCATGAACGTCAGCCA
CCCTCTTTCTCACGTGACTCCTCCTCTCTATCCCGCGCTGTAGATCTGTG
CTGCTGTGCCGTGGTCTTTATGTATGCATAGGTATTTCTATTTCTGCATG
CATGCATGTGGAGAAGAACTGCTGTACGTGTGTGGACGTCATCGATCATT
ACCGTCCCGATCCCTTTGTTCGAACAGCAGTCAATCCCAGCCGCAGCAGC
CCACCACCCAAGGTCGTACACGTACAACATACCTTCTAAGAAATGAAAGT
CGATCGTTGTCTAAGCCCTACACAGCAGTACACGTACACAGAAGTATGTA
GGTGCGCGACGTTACCCGGAATTGCTTGTCGTGTTAGGCATAAATTACAG
CAGTATACTCGGTGCCAACGGAGTCCCTGTCCTCTTTGCAATGTGAGATA
TTTGGGTGGTCTGTTGTCTTCGCATCTGTACCAGCCCTGACGCGGACCGC
TCTCCGTGGTCACAGGCCAACTACCGTATACGACACAAGATGACACACCC
CTTGGACTGATTTTCAAAGCTCGATTTATCAACAGCAGAAAGAGCCGCAG
CGCCGAAAACGGCGGCGTTGAAGCCGTCTGGTCGAGAGCTCTCCGAAAGC
GTATCGTTTCGTTTATTTTTTGATGCATCCTCTTCGTCGTGGAGTAATCG
AGTTTTGCAAATTGGTCGAGGGGGTGTGTTATCTTGTGTCGTGTACGGTA
GGTACCCGAAGAGGATTGTGCGCATACAGCAGTACATTCCTCTGTGAGAG
GGGCTTGACGACAACAACCGCGCCGCCTTTAAAGCATGCGTGTGCCTACA
TACGTATACCACCACACAGGTAGGTACATAGAAGTAGAACAAGCAGTGTA
GTTCAACCGCACAACCCACACCTGCTTCCTCTACACTCCCAGCAGAACAC
ATGCAACAACAGCAGTCTGATACACAAGGTGCCAACCAAATGGTCCTTGT
TGAGTATTGTACGTTCTCCACACGGGAGAGGTATTTTCGCAACATGCTGC
TCGGAGATTTCATTGCTATTTCTTACCCGGTATAGAACTACAGGGGAGGA
TGTAAGATGTATGCATAGGTTACCTGTGCAGATGTTGTTGTACCCTAAGC
ACCAGCTGCTATGACTGATATACATCATCAGTGTATAGACTTAAAAAGAC
TCGATTTAAGTCCAGTACCCAGCCGGTTTCCCTCAACTCACTGAAAAGAC
TCCCCCACATCCCGTTCGAACGTGGGTATATCTCGAACGGGTTATTTCTT
CCTGTGTGTGTATTTACTTTTCCTAATATTTCCTCGACTGCTGTACTAAT
CCTTGAGTCGATATGGGTTCGTCGTGCTTCTTTTAGAACATACCCCACTG
TAGTAATAAGAATCGCAGTCACAGAGAGACCACCCGTTCCAGATAATGCC
CCACACGAAAGGATGACTTTCAGTCTTGGCAGGTGAGTGTTGGAGAAGAA
CCTGTCTGACTTACCTCGAGTCTGTTTAAGCGTATGCATGCCAGGTATGC
ATATGTGTTCACGAAGCATCCGCGATGCCAGCGGATAAGAAATTACCCGC
TCTACAGCAAACGCATCTATACTGCTGCTGTGGGTGTGTGCCGCTTTTCA
TATATTTCCCGTCCGTTCCGTCAGTGAAGGGATATTCAACAACCCGTGCG
TTCAACAAGTAAATTACAGAGGAAAACGCGCAAGTAAACAACGAAGATCA
TGGGTTCGGTAAGTAGGCCATTTTTTTGGGAAATTCCTGTTGTACTCTGT
AGTCTCGTGCCACCGGCCAAGCTGGGGTACCCGGTTCATGTCCCTATGGC
CTGCAACACGCTACATGTACGACATTGCGGCTGACACCTGATCGATCGCC
CATCTCCCCGGGAATCGAGGTATTGGACACACGTACCCCCAAAAAGTGCT
CTTTCGTTTCCCGGCTAGTTTAAACCCTCCCGGCACTGCGAATGAAGAAC
ATAAACGTACGTTCTATGCGTACGGCAGCACGATGTTCTCTGAATCGTTG
CGAAATGATGGCCTCACGGGGAGTTCTTCCCCCTTATTTTTCCGTGATCT
GTACAGCAGTAGCTGCCCAAGGTTGCCCCCCCCCCGCTGAGTTTCCCAAT
AAGAAAAAAGAAATGGGCTCGAGTGTAAAAATTTAGGGCCTCTGTTGACG
TTCAACAGTTAAACCTATTTGAGCACCCAATTTGTGGATGGGCCTAAGTT
TGGTTTTGGGCCAAAAAGTGCGTCGCTGTAACATAATTTTACCGCACCCA
AGTATTAATCGAGGTTTAGCAACACCCAAATACGGTTGAATCGCCGCAGC
GAGGTGACGTGGTCACCAAACAGTTATACAGAGCGATAGACAATGTGCAT
CACACAGGAGCTGTTAGAATGGAGTATCAGCACACACACGAAGCTAATCA
TCAGCAGGTGGTGCCAGTGGTCCAAGCCTTATCCTCAGGCGTGCTCTACA
ACTTTTGTTTGGACTCTCGCTGCACACGACCGGCCGTTGGCTTTTGACAT
CGCACATTTTGGGAAGCAACCTCCACAGCAACCCAACCTGCGCGAAGAGT
TGACACGCTCACAGAATCATTGCGATGCAGCTATTTCCCAGCAGCGGGCA
GTGGGCGATGCGTGTGGGTGCCGCACGGCCAGTGTCCCACATGCGGTCCC
GTCAGGGGTAACGCCAACACGAGTTCAGCTCGTCATGGGGGGTGCAAAAG
GGGCGAAGTCCAGCTCGTGTACTTCGATTCAGCATAAAACGGTTCAATTT
GCAATTGTTTTTGGTGCACCCAATATCAAAGTCCCACTTTTACGGGCAGA
GAAAGCGTCATCGTGTTTTTCCCTGTTGACCAATCAGCGTCTTTCGCCCC
CGATACCCCCCCAAACTTAGCTACTTGCAGGGCCTCTATTTTTGTTGCAA
TTTTTCACATTAAAACAGGCCCGTAAATGGAAAGTTTGAGGCCCCCATCT
TGAAGTCGCTGCACTGCTGCTGTTTAGTTTTGTTGGGAACATTTCCCCTC
TCTGCCAAACGTTGCCCCCCGCCCCCCCCCTCCCCCCCGCCCTTTATGGG
GAGCTTTGAGACACACACGAGCCCTTGAAATGACTCCAAATCTTGCGAGT
TCTGAACGCCTTTGGGTTGAACCCCCCAAGAGAAGTTGGCCCAGAATATG
AAGACTTTGAGTCAGCCCGTTCGTGCCGTGGCTGAAATGTTTCGATCAAA
AGCATGAAAGTTCGCTCACCCAAAAGTAGAGATGGCCCCGGGGCGTGCTT
TTTCATCATGGCGTTTGACACACACCCCGCTCCGTGATAGGAGGACGGAG
TAAGCCGCGGATATGCACACGGCTCAACGAGCTATAATAGCTGCCCAAAT
AGTGTGTCTGCTCCTGGGATGGTGCCTGTTGTCGCTCCATGTGCGCACCC
TGCTTACCCCCCCCTCCATGCCCTTTGGTGGAAACTGCCTCCTCCTCCTC
CTCCTCCTCGTTCGCGGCGTGTACCCCCTGTACACAGGTGAAAATGGTCC
TTATCCCCAAGAGGGAGGAGTTTAGCGAGCTGGAGAGGGTGAAGCTGTGG
TGGGGGCGAGAGGACTACTCGCAGTTCCGGCAGGTGCTGATCGACTGGAA
GCGGGCGAACGCGCACCGCATCTCGCACTCGGACAACATCCTGTCCATCA
ACCTCAGCGACATCGACGAGGAAGAGGAGTCCCCCACCGGCCAGGACCAT
TCA back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_M_contig96:187298..192250- >mRNA_E-siliculosus-1a_M_contig96.17573.1 ID=mRNA_E-siliculosus-1a_M_contig96.17573.1|Name=mRNA_E-siliculosus-1a_M_contig96.17573.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1356bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:187298..192250- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGTACACGAGGAAACAGAGATGGAGAAGGACTCGGACGCGCAAGCAGGC
CTGGGGCGACCTTCCCCCAGAGCTTCTAGACGCGATGCTCGCGGCCGGCG
GCGGCGGTATGCCCAAGTCCGTTTCCTGGGACCACAGCTACGCCGCGGGG
CTGAAGATTCGAGCAGACAGGGCGGCCGAGGTAGCGCACCGGGCAGCGGC
CGAGGACTCCAAGCTCAAAGCGGCGGCGGCGGCGGCGGCGGTGGCGGCCG
CAAAGGGCAAGGGGGTCGAGGTCAGCATCCCGCGGTCGGTGTCCTGCTCG
TCCCTCGGACCGAAGCGGACTCTGTTCGCCCGAACCTCGTCCTCCAAGGA
TGAGCTTGGGGCCGCGGGGGGCGGCGTCAGGAGAGGTAGCAGCGCGATCA
CAGCGGCTCAGCACAGGCGGCGCATGCTGCCGCACCGGAGAGGCGTGAGC
TTTAACACACAGATGTACACGAGGAAACAGAGATGGAGAAGGACTCGGAC
GCGCAAGCAGGCCTGGGGCGACCTTCCCCCAGAGCTTCTAGACGCGATGC
TCGCGGCCGGCGGCGGCGGTATGCCCAAGTCCGTTTCCTGGGACCACAGC
TACGCCGCGGGGCTGAAGATTCGAGCAGACAGGGCGGCCGAGGTAGCGCA
CCGGGCAGCGGCCGAGGACTCCAAGCTCAAAGCGGCGGCGGCGGCGGCGG
CGGTGGCGGCCGCAAAGGGCAAGGGGGTCGAGGTCAGCATCCCGCGGTCG
GTGTCCTGCTCGTCCCTCGGACCGAAGCGGACTCTGTTCGCCCGAACCTC
GTCCTCCAAGGATGAGCTTGGGGCCGCGGGGGGCGGCGTCAGGAGAGGTA
GCAGCGCGATCACAGCGGCTCAGCACAGGCGGCGCATGCTGCCGCACCGG
AGAGGCGTGAGCTTTAACACACAGGTGAAAATGGTCCTTATCCCCAAGAG
GGAGGAGTTTAGCGAGCTGGAGAGGGTGAAGCTGTGGTGGGGGCGAGAGG
ACTACTCGCAGTTCCGGCAGGTGCTGATCGACTGGAAGCGGGCGAACGCG
CACCGCATCTCGCACTCGGACAACATCCTGTCCATCAACCTCAGCGACAT
CGACGAGGAAGAGGAGTCCCCCACCGGCCAGGACCATTCAGTGAAAATGG
TCCTTATCCCCAAGAGGGAGGAGTTTAGCGAGCTGGAGAGGGTGAAGCTG
TGGTGGGGGCGAGAGGACTACTCGCAGTTCCGGCAGGTGCTGATCGACTG
GAAGCGGGCGAACGCGCACCGCATCTCGCACTCGGACAACATCCTGTCCA
TCAACCTCAGCGACATCGACGAGGAAGAGGAGTCCCCCACCGGCCAGGAC
CATTCA back to top
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