mRNA_E-siliculosus-1a_M_contig96.17572.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E-siliculosus-1a_M_contig96.17572.1
Unique Name	mRNA_E-siliculosus-1a_M_contig96.17572.1
Type	mRNA
Organism	Ectocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)

Homology

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BLAST of mRNA_E-siliculosus-1a_M_contig96.17572.1 vs. uniprot
Match: D8LQA1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQA1_ECTSI)

HSP 1 Score: 528 bits (1361), Expect = 6.690e-184
Identity = 322/386 (83.42%), Postives = 325/386 (84.20%), Query Frame = 1

Query:  106 NVPEGTDEGQKEEARIGEEVXXXXXXXXXXACARASFSVGGSGLAGGGGPDWSPNGGANGTFPLRRALTFGEVGGGHSPSSPADSGGGRLREVPLSEAQAMAESLRTWRQSFDVRNAFFGGESGDGDAEEDRGRAVSLQVQSRSFARRGRATALVTSRTKWTSDVVGGGEGSSSVEAKGLGLEPGGRSGGEEGSGAMAXXXXXXXXXXXXXXG-CVDRGQRQDGVGEKTHRTLSDQEWSSSRRIVEMAASEAASLTNPVMAAFERERKEAAARQAEIEDAQAARAAAMVKQAXAAAKAGNDEV------------APEDDGELHVGSVVRLGLNDAPGSAAVASAAGLRIAAEGISNLSLRSRDSVENLQERGEQSWGPLPLSSSA 1224
            +VPEGTDEGQKEEARIG+EV           CARASFSVGGSGLAGGGGPDWSPNGGANGTFPLRRALTFGEVGGGH P SPADSGGGRLREVPLSEAQAMAESLR WRQSFDVRNAFFG ESGDGDAEEDRGRAVSLQVQSRSFARRGRATALVTSRTKWTSDVVGGGEGSS VEAKGLGLE GGRSGGEEGSGAMA XXXXXXXXXXXXX  CVDRGQRQDGVGEKTHRTLSDQEWSSSRRIVEMAASEAASLTNPVMAAFERERKEAAARQAE+EDAQ           X                        EDDGELHVGSVVRLGLNDAPGS      AGLRIAAEGISNLSLRSRDSVENLQERGEQSWGPLPLSSSA
Sbjct:   94 DVPEGTDEGQKEEARIGKEVVGSGGGKKRRPCARASFSVGGSGLAGGGGPDWSPNGGANGTFPLRRALTFGEVGGGHGPCSPADSGGGRLREVPLSEAQAMAESLRAWRQSFDVRNAFFG-ESGDGDAEEDRGRAVSLQVQSRSFARRGRATALVTSRTKWTSDVVGGGEGSSGVEAKGLGLELGGRSGGEEGSGAMAGXXXXXXXXXXXXXXXCVDRGQRQDGVGEKTHRTLSDQEWSSSRRIVEMAASEAASLTNPVMAAFERERKEAAARQAEVEDAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTAEDDGELHVGSVVRLGLNDAPGSXXXXXXAGLRIAAEGISNLSLRSRDSVENLQERGEQSWGPLPLSSSA 478

[Close]

BLAST of mRNA_E-siliculosus-1a_M_contig96.17572.1 vs. uniprot
Match: A0A6H5L2B2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2B2_9PHAE)

HSP 1 Score: 499 bits (1285), Expect = 3.830e-168
Identity = 319/389 (82.01%), Postives = 329/389 (84.58%), Query Frame = 1

Query:   97 GQGNVPEGTDEGQKEEARIGEEVXXXXXXXXXXA-CARASFSVGGSGLAGGGGPDWSPNGGANGTFPLRRALTFGEVGGGHSPSSPADSGGGRLREVPLSEAQAMAESLRTWRQSFDVRNAFFGGESGDGDAEEDRGRAVSLQVQSRSFARRGRATALVTSRTKWTSDVVGGGEGSSSVEAKGLGLEPGGRSGGEEGSGAMAXXXXXXXXXXXXXXGCVDRGQRQDGVGEKTHRTLSDQEWSSS-RRIVEMAASEAASLTNPVMAAFERERKEAAARQAEIEDAQAARAAAMVKQAXAAAKAGNDEVAP-----------EDDGELHVGSVVRLGLNDAPGSAAVASAAGLRIAAEGISNLSLRSRDSVENLQERGEQSWGPLPLSSSA 1224
            G G+VP+GTDE QK         XXXXXXXXXX  CARASFSVG SGLAGGGGPDWSPNGGANGTFPLRRALTFGEVGGGHSPSSPADSGG RL+EVPLSEAQAMAESLR WRQSFDVRNA FGGESGDGDAEEDR RAVSLQ QSRSFAR GRATAL TS+TKWT+DVVGGGEGSSSVEA GLGL+PGGRSGGEEGSGAM XXXXXXXXXXXXX   VDRGQRQDGVGEKTHRTLSDQEWSSS RR VEMAASEAASLTNPVMAAFER+RKEAAARQAE+               X   KAGN EVAP           EDDGELH+GSVVRLGLNDAPGSA+ ASAAGLRIAAEGISNLSLRSRDSVENLQE GEQSWGPLPLSSSA
Sbjct:  393 GLGDVPQGTDEEQKXXXXXXXXXXXXXXXXXXXXHCARASFSVGESGLAGGGGPDWSPNGGANGTFPLRRALTFGEVGGGHSPSSPADSGGARLKEVPLSEAQAMAESLRAWRQSFDVRNASFGGESGDGDAEEDRDRAVSLQEQSRSFARIGRATALFTSQTKWTTDVVGGGEGSSSVEATGLGLDPGGRSGGEEGSGAMXXXXXXXXXXXXXXGSRVDRGQRQDGVGEKTHRTLSDQEWSSSSRRTVEMAASEAASLTNPVMAAFERKRKEAAARQAEVXXXXXXXXXXXXXXXXXXXKAGNGEVAPAAGAEGAPAAAEDDGELHMGSVVRLGLNDAPGSASAASAAGLRIAAEGISNLSLRSRDSVENLQEMGEQSWGPLPLSSSA 781

The following BLAST results are available for this feature:

BLAST of mRNA_E-siliculosus-1a_M_contig96.17572.1 vs. uniprot

BLAST of mRNA_E-siliculosus-1a_M_contig96.17572.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 2

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description
D8LQA1_ECTSI	6.690e-184	83.42	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5L2B2_9PHAE	3.830e-168	82.01	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E-siliculosus-1a_M_contig96:185849..187075-
coding sequence from alignment at E-siliculosus-1a_M_contig96:185849..187075-

protein sequence of mRNA_E-siliculosus-1a_M_contig96.17572.1

>prot_E-siliculosus-1a_M_contig96.17572.1 ID=prot_E-siliculosus-1a_M_contig96.17572.1|Name=mRNA_E-siliculosus-1a_M_contig96.17572.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=409bp
MERERRRQALAPPPPQQQQQQQLEDVVQQAAAGQGNVPEGTDEGQKEEAR
IGEEVVGGGGGKKRRACARASFSVGGSGLAGGGGPDWSPNGGANGTFPLR
RALTFGEVGGGHSPSSPADSGGGRLREVPLSEAQAMAESLRTWRQSFDVR
NAFFGGESGDGDAEEDRGRAVSLQVQSRSFARRGRATALVTSRTKWTSDV
VGGGEGSSSVEAKGLGLEPGGRSGGEEGSGAMAGGGGAASDGSSSGGGCV
DRGQRQDGVGEKTHRTLSDQEWSSSRRIVEMAASEAASLTNPVMAAFERE
RKEAAARQAEIEDAQAARAAAMVKQAAAAAKAGNDEVAPEDDGELHVGSV
VRLGLNDAPGSAAVASAAGLRIAAEGISNLSLRSRDSVENLQERGEQSWG
PLPLSSSA*

mRNA from alignment at E-siliculosus-1a_M_contig96:185849..187075-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E-siliculosus-1a_M_contig96.17572.1 ID=mRNA_E-siliculosus-1a_M_contig96.17572.1|Name=mRNA_E-siliculosus-1a_M_contig96.17572.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=1227bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:185849..187075- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGAGCGGGAGCGACGCCGGCAAGCCTTGGCACCGCCGCCGCCGCAGCA
GCAGCAGCAGCAGCAGCTCGAGGACGTGGTTCAACAAGCGGCGGCGGGGC
AGGGGAACGTTCCCGAAGGGACGGACGAGGGGCAGAAGGAGGAAGCGCGC
ATCGGCGAAGAGGTGGTGGGCGGCGGCGGCGGGAAGAAGAGGAGAGCCTG
CGCGAGAGCGAGCTTCTCCGTCGGGGGGTCAGGCCTTGCCGGAGGCGGCG
GGCCCGACTGGTCGCCGAACGGCGGCGCCAACGGGACCTTTCCCCTCCGT
AGGGCGCTTACGTTCGGCGAGGTCGGCGGCGGCCACAGCCCGTCCTCACC
CGCGGACTCCGGCGGCGGCCGCCTGAGGGAAGTGCCGCTCTCGGAGGCGC
AGGCCATGGCGGAGTCCCTGCGCACCTGGCGCCAGAGTTTCGACGTTCGG
AACGCCTTCTTCGGCGGCGAGTCCGGCGACGGCGATGCGGAGGAAGACAG
GGGCAGAGCCGTGTCGCTCCAGGTGCAAAGCCGGAGCTTCGCCCGGAGAG
GACGCGCCACGGCTCTGGTTACGTCGCGGACGAAGTGGACTAGCGATGTT
GTCGGCGGCGGAGAGGGTTCGAGCAGCGTGGAAGCGAAAGGCCTCGGTCT
TGAACCGGGGGGGAGGAGCGGAGGCGAGGAGGGCTCAGGCGCGATGGCCG
GCGGCGGCGGGGCCGCAAGCGACGGCAGCAGCAGCGGCGGGGGCTGCGTA
GACCGGGGCCAACGGCAGGACGGGGTGGGGGAGAAGACACACCGGACTCT
GAGCGACCAGGAGTGGTCGTCGTCGAGAAGAATAGTCGAGATGGCCGCCA
GCGAAGCCGCATCGCTGACGAACCCGGTCATGGCGGCCTTCGAGCGGGAG
CGCAAGGAGGCCGCCGCGAGGCAGGCGGAGATCGAGGACGCGCAGGCGGC
GAGAGCGGCGGCAATGGTGAAGCAGGCGGCGGCGGCAGCGAAGGCCGGGA
ATGACGAGGTGGCTCCGGAGGACGATGGCGAGCTTCATGTGGGGTCGGTC
GTACGGCTGGGCTTGAACGACGCTCCCGGGTCGGCGGCGGTGGCGTCTGC
GGCGGGCCTCCGCATTGCCGCCGAAGGGATATCGAACCTCTCCCTGAGAT
CGAGAGACTCGGTGGAGAACCTGCAGGAGAGGGGGGAGCAGTCTTGGGGG
CCGCTGCCTCTGTCATCCTCCGCCTGA

Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig96:185849..187075-

>mRNA_E-siliculosus-1a_M_contig96.17572.1 ID=mRNA_E-siliculosus-1a_M_contig96.17572.1|Name=mRNA_E-siliculosus-1a_M_contig96.17572.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=2454bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:185849..187075- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGAGCGGGAGCGACGCCGGCAAGCCTTGGCACCGCCGCCGCCGCAGCA
GCAGCAGCAGCAGCAGCTCGAGGACGTGGTTCAACAAGCGGCGGCGGGGC
AGGGGAACGTTCCCGAAGGGACGGACGAGGGGCAGAAGGAGGAAGCGCGC
ATCGGCGAAGAGGTGGTGGGCGGCGGCGGCGGGAAGAAGAGGAGAGCCTG
CGCGAGAGCGAGCTTCTCCGTCGGGGGGTCAGGCCTTGCCGGAGGCGGCG
GGCCCGACTGGTCGCCGAACGGCGGCGCCAACGGGACCTTTCCCCTCCGT
AGGGCGCTTACGTTCGGCGAGGTCGGCGGCGGCCACAGCCCGTCCTCACC
CGCGGACTCCGGCGGCGGCCGCCTGAGGGAAGTGCCGCTCTCGGAGGCGC
AGGCCATGGCGGAGTCCCTGCGCACCTGGCGCCAGAGTTTCGACGTTCGG
AACGCCTTCTTCGGCGGCGAGTCCGGCGACGGCGATGCGGAGGAAGACAG
GGGCAGAGCCGTGTCGCTCCAGGTGCAAAGCCGGAGCTTCGCCCGGAGAG
GACGCGCCACGGCTCTGGTTACGTCGCGGACGAAGTGGACTAGCGATGTT
GTCGGCGGCGGAGAGGGTTCGAGCAGCGTGGAAGCGAAAGGCCTCGGTCT
TGAACCGGGGGGGAGGAGCGGAGGCGAGGAGGGCTCAGGCGCGATGGCCG
GCGGCGGCGGGGCCGCAAGCGACGGCAGCAGCAGCGGCGGGGGCTGCGTA
GACCGGGGCCAACGGCAGGACGGGGTGGGGGAGAAGACACACCGGACTCT
GAGCGACCAGGAGTGGTCGTCGTCGAGAAGAATAGTCGAGATGGCCGCCA
GCGAAGCCGCATCGCTGACGAACCCGGTCATGGCGGCCTTCGAGCGGGAG
CGCAAGGAGGCCGCCGCGAGGCAGGCGGAGATCGAGGACGCGCAGGCGGC
GAGAGCGGCGGCAATGGTGAAGCAGGCGGCGGCGGCAGCGAAGGCCGGGA
ATGACGAGGTGGCTCCGGAGGACGATGGCGAGCTTCATGTGGGGTCGGTC
GTACGGCTGGGCTTGAACGACGCTCCCGGGTCGGCGGCGGTGGCGTCTGC
GGCGGGCCTCCGCATTGCCGCCGAAGGGATATCGAACCTCTCCCTGAGAT
CGAGAGACTCGGTGGAGAACCTGCAGGAGAGGGGGGAGCAGTCTTGGGGG
CCGCTGCCTCTGTCATCCTCCGCCTGAATGGAGCGGGAGCGACGCCGGCA
AGCCTTGGCACCGCCGCCGCCGCAGCAGCAGCAGCAGCAGCAGCTCGAGG
ACGTGGTTCAACAAGCGGCGGCGGGGCAGGGGAACGTTCCCGAAGGGACG
GACGAGGGGCAGAAGGAGGAAGCGCGCATCGGCGAAGAGGTGGTGGGCGG
CGGCGGCGGGAAGAAGAGGAGAGCCTGCGCGAGAGCGAGCTTCTCCGTCG
GGGGGTCAGGCCTTGCCGGAGGCGGCGGGCCCGACTGGTCGCCGAACGGC
GGCGCCAACGGGACCTTTCCCCTCCGTAGGGCGCTTACGTTCGGCGAGGT
CGGCGGCGGCCACAGCCCGTCCTCACCCGCGGACTCCGGCGGCGGCCGCC
TGAGGGAAGTGCCGCTCTCGGAGGCGCAGGCCATGGCGGAGTCCCTGCGC
ACCTGGCGCCAGAGTTTCGACGTTCGGAACGCCTTCTTCGGCGGCGAGTC
CGGCGACGGCGATGCGGAGGAAGACAGGGGCAGAGCCGTGTCGCTCCAGG
TGCAAAGCCGGAGCTTCGCCCGGAGAGGACGCGCCACGGCTCTGGTTACG
TCGCGGACGAAGTGGACTAGCGATGTTGTCGGCGGCGGAGAGGGTTCGAG
CAGCGTGGAAGCGAAAGGCCTCGGTCTTGAACCGGGGGGGAGGAGCGGAG
GCGAGGAGGGCTCAGGCGCGATGGCCGGCGGCGGCGGGGCCGCAAGCGAC
GGCAGCAGCAGCGGCGGGGGCTGCGTAGACCGGGGCCAACGGCAGGACGG
GGTGGGGGAGAAGACACACCGGACTCTGAGCGACCAGGAGTGGTCGTCGT
CGAGAAGAATAGTCGAGATGGCCGCCAGCGAAGCCGCATCGCTGACGAAC
CCGGTCATGGCGGCCTTCGAGCGGGAGCGCAAGGAGGCCGCCGCGAGGCA
GGCGGAGATCGAGGACGCGCAGGCGGCGAGAGCGGCGGCAATGGTGAAGC
AGGCGGCGGCGGCAGCGAAGGCCGGGAATGACGAGGTGGCTCCGGAGGAC
GATGGCGAGCTTCATGTGGGGTCGGTCGTACGGCTGGGCTTGAACGACGC
TCCCGGGTCGGCGGCGGTGGCGTCTGCGGCGGGCCTCCGCATTGCCGCCG
AAGGGATATCGAACCTCTCCCTGAGATCGAGAGACTCGGTGGAGAACCTG
CAGGAGAGGGGGGAGCAGTCTTGGGGGCCGCTGCCTCTGTCATCCTCCGC
CTGA