mRNA_E-siliculosus-1a_M_contig96.17570.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig96.17570.1 vs. uniprot
Match: D8LQA3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQA3_ECTSI) HSP 1 Score: 1989 bits (5154), Expect = 0.000e+0 Identity = 1162/1310 (88.70%), Postives = 1176/1310 (89.77%), Query Frame = 1 Query: 37 MAGNGYGNDRGGYVYDEXXXXXXXXXXXXXXGGRNFADRGYSSYDGRYDINNAYQTTRYDPSSPRGLGGPHDRGVYAPPTATIINNNRGVGSSQYPSRRGGPPGATRYPNPSTAYDNFSYPPSPRPPPSPRQPQGFGGVAGQLLNAAGQLSPSNKRASGGRAVFDDEVTVGPAAAGGEKSAARLKSTSXXXXXXXASRFGLYAPSGGGSGEIPGAGSSRGDDGDGGGNARFRDRGRSQIARAPTNPRYQERTRNSFEERDQQLLXXXXXXRAPHQRKASPXXXXXXXXXSARAPATAAVXXXXEXHSGARTPXXXXXXXXXXXXXXXXXXPRPPATPADPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPSRPPLSWITIERAGKRRLGVPAEERRTKLGGENETVSPFQGCPIHDCPMGSSDGISVSWMARHLESHTKVAMEKPQKELYIRSSVAEILHEMCLDSEVPRAQRKFERRKMSRALLDTPRAGIGHLAGIMETVVTGDNKSPHVRRCAHDLAVGGCEGITREGTIVRCDKCMAWYHVSCGQMVRGDGISSEEAREETLCRTCARITIGAPQGKDPTATLQKQLSLVREKRTKMMEFLEGDVETGAPCGVFDLPLNIRDVSTAGGVGPKDRNANGPAAGGNSSGGNGGVGKRDNRPPCAAASCGRESRQDSKFCCDACGVLHAEAFLAKAIRHHVEESAGIDRGRRLRETRELKTRKQQVGLAMKKVEFPRVPGFKTERETALHGLVVRRCRLWQRLIEIGAYWEKVSGSRVGVLAATKTAAQXXXXXXXXXXXXXXXXXXXVDPALSRSAPERQAGGRDRGGSIASASSSGGVQVELDVGGASIAVAAKNNTAAASAGQQKAEVPGAGKEVVGVXXXXXXXXXXXXXGTEGQGASNGCVGWEGGGAKKRTREDGDVSPQQAAKSLKQTSNGEAANGIDVGGDGAAIPEPPSAA-AMGAQRKGKGKAALDPQATESPTAAMEVSSADPEAEIDIGLEGPDTMAEIAGQAWTYGSLDKERVLWYCPPGGREADRCANGEQLQAYLRERYGNGRVPGQFTFSGKDAPPHWERVDVRRPDNGSLIAKGKDKAVVPPPPSGGVQNFTCVYCGEETGPRVSEHLERCYRKTTAMRNERLKHASLRPLPGNHFLQGGSRLGAASVTEPVSVPPSAALDSPAAIGRQLLSRRISYANFDSLPDPSRFQLHHDLKGWRESPSRLDFLYKELVRQRNAAIYELQALDREEAELEVHLRHDWMKDDLRSIPRMRINYL 3963
MAGNGYGNDRGGYVYDE G RNFADRGYSSYDGRYDINNAYQTTRYDPSSPRGLGGPHDRGVYAPPTATIINNNRGVGSSQYPSRRGGPPGATRYPNPSTAYDNFSYPPSPRPPPSPRQPQGFGGVAGQLLNAAGQLSPSNKRASGGRAVFDDEVT+GPAAAGGEKSAARLKSTS XXXXXXASRFGLYAPSGGGSGEIPGAGSSRGDDGDGGGNARFRDRGRSQIA+APTNPRYQERTRNSFEERDQQ+ RAPHQR XXXXXXXXX XXXX X XXXXXXXXXXXXXXXXXX TPA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPSRPPLSWITIERAGKRRLGVPAEERRTKLGGENETVSPFQGCPIHDCPMGSSDGISVSWMARHLESHTKVAMEKPQKELYIRSSVAEILHEMCLDSEVPRAQRKFERRKMSRALLDTPRAGIGHLAG++ETVVTGDNKSPHVRRCAHDLAVGGCEGITREGTIVRCDKCMAWYHVSCGQMVRGDGISSEEAREETLCRTCARI IGAPQGKDPTATLQKQLSLVREKRTKM+EFLE DVETGAPCGVFDLPLNIRDVSTAGGVGPKD NANGP AGGNS+GGNGGV KRDNRPPCAAASCGRESRQDSKFCCDACGVLHAEAFLAKAIRHHVEESAGIDRGRRLRETRELKTRKQQVGLAMKKVEFPRVPGFKTERETALH LVVR+CRLWQRLIEIGAYWEKVSGSRVGVLAAT+TAAQ XXXX VDPALSRSAPER AGGRDRGG IASASSSGGVQVELDVG +AEV GAGKEVVG XXXXXXXXXXXXXGTEGQGASNGCVGWEGGGAKKR REDGD PQQAAKSLKQTSNGEAA+GIDVGG GAAI EPPSAA AMGAQ KGKGKAALDPQA ESPTAAMEVSSADPEAEID GLE PDTMAEIAGQAWTYGS KERVLWYCPPGG EADRC + EQLQAYLRERYGNGRVPGQFTFSGKDAPP WERVD RRPDNGSLIAK KDKA VPPPPSGGVQNF CVYCGEETGP VSEHLERCYRKTTAMRNERLKHA+LRPL NHFLQGGSRLGAASVTEPVSVPPSAALDSPAAIGRQLLSRRI+YANFDSLPDPSRFQLHHDLKGWRESPSRLDFLYKELVRQRNAAIYELQALDREEAELEVHLRHDWMKDDLRSIPRMRINYL
Sbjct: 1 MAGNGYGNDRGGYVYDEDDDDGDYSAQQHGHGSRNFADRGYSSYDGRYDINNAYQTTRYDPSSPRGLGGPHDRGVYAPPTATIINNNRGVGSSQYPSRRGGPPGATRYPNPSTAYDNFSYPPSPRPPPSPRQPQGFGGVAGQLLNAAGQLSPSNKRASGGRAVFDDEVTIGPAAAGGEKSAARLKSTSAXXXXXXASRFGLYAPSGGGSGEIPGAGSSRGDDGDGGGNARFRDRGRSQIAKAPTNPRYQERTRNSFEERDQQMREQKHQQRAPHQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPAX---------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPSRPPLSWITIERAGKRRLGVPAEERRTKLGGENETVSPFQGCPIHDCPMGSSDGISVSWMARHLESHTKVAMEKPQKELYIRSSVAEILHEMCLDSEVPRAQRKFERRKMSRALLDTPRAGIGHLAGMIETVVTGDNKSPHVRRCAHDLAVGGCEGITREGTIVRCDKCMAWYHVSCGQMVRGDGISSEEAREETLCRTCARIAIGAPQGKDPTATLQKQLSLVREKRTKMLEFLEEDVETGAPCGVFDLPLNIRDVSTAGGVGPKDGNANGPDAGGNSNGGNGGVDKRDNRPPCAAASCGRESRQDSKFCCDACGVLHAEAFLAKAIRHHVEESAGIDRGRRLRETRELKTRKQQVGLAMKKVEFPRVPGFKTERETALHALVVRKCRLWQRLIEIGAYWEKVSGSRVGVLAATRTAAQTSSRKATAXXXXSVTASGAVDPALSRSAPERLAGGRDRGGVIASASSSGGVQVELDVGXXXXXXXXXXXXXXXXXXXXEAEVSGAGKEVVGXXXXXXXXXXXXXXGTEGQGASNGCVGWEGGGAKKRAREDGDGPPQQAAKSLKQTSNGEAASGIDVGGGGAAITEPPSAAVAMGAQSKGKGKAALDPQAAESPTAAMEVSSADPEAEIDTGLEVPDTMAEIAGQAWTYGSFGKERVLWYCPPGGGEADRCTSSEQLQAYLRERYGNGRVPGQFTFSGKDAPPQWERVDARRPDNGSLIAKDKDKAAVPPPPSGGVQNFMCVYCGEETGPWVSEHLERCYRKTTAMRNERLKHATLRPLRDNHFLQGGSRLGAASVTEPVSVPPSAALDSPAAIGRQLLSRRIAYANFDSLPDPSRFQLHHDLKGWRESPSRLDFLYKELVRQRNAAIYELQALDREEAELEVHLRHDWMKDDLRSIPRMRINYL 1295
BLAST of mRNA_E-siliculosus-1a_M_contig96.17570.1 vs. uniprot
Match: A0A6H5L313_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L313_9PHAE) HSP 1 Score: 1846 bits (4782), Expect = 0.000e+0 Identity = 1112/1280 (86.88%), Postives = 1138/1280 (88.91%), Query Frame = 1 Query: 130 GGRNFADRGYSSYDGRYDINN--AYQTTRYDPSSPRGLGGPHDRGVYAPPTATIINNNRGVGSSQYPSRRGGPPGATRYPNPSTAYDNFSYPPSPRPPPSPRQPQGFGGVAGQLLNAAGQLSPSNKRASGGRAVFDDEVTVGPAAAGGEKSAARLKSTSXXXXXXXASRFGLYAPSGGGSGEIPGAGSSRGDDGDGGGNARFRDRGRSQIARAPTNPRYQERTRNSFEERDQQLLXXXXXXRAPHQRKASPXXXXXXXXXSARAPATAAVXXXXEXHSGARTPXXXXXXXXXXXXXXXXXXPRPPATPADPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPSRPPLSWITIERAGKRRLGVPAEERRTKLGGENETVSPFQGCPIHDCPMGSSDGISVSWMARHLESHTKVAMEKPQKELYIRSSVAEILHEMCLDSEVPRAQRKFERRKMSRALLDTPRAGIGHLAGIMETVVTGDNKSPHVRRCAHDLAVGGCEGITREGTIVRCDKCMAWYHVSCGQMVRGDGISSEEAREETLCRTCARITIGAPQGKDPTATLQKQLSLVREKRTKMMEFLEGDVETGAPCGVFDLPLNIRDVSTAGGVGPKDRNANGPAAGGNSSGGNGGVGKRDNRPPCAAASCGRESRQDSKFCCDACGVLHAEAFLAKAIRHHVEESAGIDRGRRLRETRELKTRKQQVGLAMKKVEFPRVPGFKTERETALHGLVVRRCRLWQRLIEIGAYWEKVSGSRVGVLAATKTAAQXXXXXXXXXXXXXXXXXXXVDPALSRSAPERQAGGRDRGGSIASASSSGGVQVELDVGGASIAVAAKNNTAAASAGQQKAEVPGAGKEVVGVXXXXXXXXXXXXXGTEGQGASNGCVGWEGGGAKKRTREDGDVSPQQAAKSLKQTSNGEAANGIDVGGDGAAIPEPPSAAAMGAQRKGKGKAALDPQATESPTAAMEVSSADPEAEIDIGLEGPDTMAEIAGQAWTYGSLDKERVLWYCPPGGREADRCANGEQLQAYLRERYGNGRVPGQFTFSGKDAPPHWERVDVRRPDNGSLIAKGKDKAVVPPPPSGGVQNFTCVYCGEETGPRVSEHLERCYRKTTAMRNERLKHASLRPLPGNHFLQGGSRLGAASVTEPVSVPPSAALDSPAAIGRQLLSRRISYANFDSLPDPSRFQLHHDLKGWRESPSRLDFLYKELVRQRNAAIYELQALDREEAELEVHLRHDWMKDDLRSIPRMRINYL 3963
GGRNFADRGYSSYDGRYDINN YQ+TRYD SSPRG+GGPHDRGV ATIINNNRGVGSSQ+PSRRGGPPGATRYPNPSTAYDNFSYPPSPRP RQPQGFGGVAGQLLNAAGQLSPSNKRASGGRAVFDDEVT+GPAAAGGEKSAARLKSTS XXXXXX SRFGLYAPSGGGSGEIPGAGSSRGD GDGGG+ RFRDRGRSQIARAPTNPRYQ+ TR SFEERD+Q+ RAPHQRKAS XXXXXXX XXXX X XXXXXXXXXXXXXXXXX PRPPA PADPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX APSRPPLSWITIERAGKRRLGVPAEERR LGGENETVSPF+GCPIHDCPMGSSDGISVSWMARHLESHTKVAME+PQKELYIRSSVAEILHEMCLDSEVPRAQRKFERRKM+RALLDTPRAGIGHLAG+MET+VTGDNK PHVR H+ G CEGITREGTIVRCDKCMAWYHVSCGQMVRGDGISSEEAREETLCR CARITIGAPQGKDPTATLQKQLSLVREKRTKM+EFLE DVETG PCGVFDLPLNIRDV+TAGGV KD NA GPAAGGNS+GGNGGV RDNRPPCAAASCGRESRQDSKFCCDACGVLHAEAFLAKAIRHHVEESAGIDRGRRLRETRELKTRKQQVGLAMKKVEFPRVPGFKTERETALHGLV RRCRLWQRLIEIGAYWEKVSGSRVGVLAATKTAAQ XXXXXXXXXX DPALSRSAP+RQ G RDRGGSIAS S SGG+QVELDVGG SIA AAKN+TA XXXXXXXXXXXXX QGASN CVGWEGGGAKKR RE GD QQAA SLKQTSNGEAA+GIDVGG AAIPE PSAAAMGA KGKGKAALDPQA ES TAA +VSSADPEAEID GLEGPDT AEIAG+AWTYGS DKERVLWYCPPGGREADRC N EQLQAYLRERYGNGRVPGQFTFSGKDAPPHWERVD PDNGSLIAK KDKA VPP PSGGVQNFTCVYCGEETGPRVSEHLERCYRKTTAMRNERLKHA+LRPLP NHFLQGGSRLGAASVTEPVS+PPSA LDSPAAIGRQLLSRRI+YANFDSLPDPSRFQLHHDLKGWRESPSRLDFLYKELVRQRNAAIYELQALDREEAELEVHLRHDWMKDDLRSIPRMRINYL
Sbjct: 8 GGRNFADRGYSSYDGRYDINNNNGYQSTRYDTSSPRGVGGPHDRGV-----ATIINNNRGVGSSQHPSRRGGPPGATRYPNPSTAYDNFSYPPSPRPXXXXRQPQGFGGVAGQLLNAAGQLSPSNKRASGGRAVFDDEVTIGPAAAGGEKSAARLKSTSAXXXXXXXSRFGLYAPSGGGSGEIPGAGSSRGDLGDGGGSDRFRDRGRSQIARAPTNPRYQDGTRKSFEERDEQVREQKHQQRAPHQRKASAPPXXXXXXXX-----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPRPPAAPADPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA---APSRPPLSWITIERAGKRRLGVPAEERRMMLGGENETVSPFRGCPIHDCPMGSSDGISVSWMARHLESHTKVAMEQPQKELYIRSSVAEILHEMCLDSEVPRAQRKFERRKMARALLDTPRAGIGHLAGVMETMVTGDNKDPHVR---HEPQEGXCEGITREGTIVRCDKCMAWYHVSCGQMVRGDGISSEEAREETLCRACARITIGAPQGKDPTATLQKQLSLVREKRTKMLEFLERDVETGTPCGVFDLPLNIRDVNTAGGVELKDGNAKGPAAGGNSNGGNGGVDMRDNRPPCAAASCGRESRQDSKFCCDACGVLHAEAFLAKAIRHHVEESAGIDRGRRLRETRELKTRKQQVGLAMKKVEFPRVPGFKTERETALHGLVARRCRLWQRLIEIGAYWEKVSGSRVGVLAATKTAAQTSSRKAXXXXXXXXXXSGAFDPALSRSAPQRQTGVRDRGGSIASVSGSGGIQVELDVGGCSIAAAAKNDTA--EXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGASNICVGWEGGGAKKRAREGGDGPSQQAANSLKQTSNGEAASGIDVGGGSAAIPETPSAAAMGAHSKGKGKAALDPQAAESTTAATDVSSADPEAEIDKGLEGPDTTAEIAGKAWTYGSFDKERVLWYCPPGGREADRCTNREQLQAYLRERYGNGRVPGQFTFSGKDAPPHWERVDAHCPDNGSLIAKHKDKAAVPPSPSGGVQNFTCVYCGEETGPRVSEHLERCYRKTTAMRNERLKHATLRPLPDNHFLQGGSRLGAASVTEPVSLPPSACLDSPAAIGRQLLSRRIAYANFDSLPDPSRFQLHHDLKGWRESPSRLDFLYKELVRQRNAAIYELQALDREEAELEVHLRHDWMKDDLRSIPRMRINYL 1269 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig96.17570.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig96.17570.1 >prot_E-siliculosus-1a_M_contig96.17570.1 ID=prot_E-siliculosus-1a_M_contig96.17570.1|Name=mRNA_E-siliculosus-1a_M_contig96.17570.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=1310bp MAGNGYGNDRGGYVYDEDDDDGDYSAHQHGHGGRNFADRGYSSYDGRYDIback to top mRNA from alignment at E-siliculosus-1a_M_contig96:160143..168957- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig96.17570.1 ID=mRNA_E-siliculosus-1a_M_contig96.17570.1|Name=mRNA_E-siliculosus-1a_M_contig96.17570.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=8815bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:160143..168957- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig96:160143..168957- >mRNA_E-siliculosus-1a_M_contig96.17570.1 ID=mRNA_E-siliculosus-1a_M_contig96.17570.1|Name=mRNA_E-siliculosus-1a_M_contig96.17570.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=7860bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:160143..168957- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |