mRNA_E-siliculosus-1a_M_contig96.17569.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig96.17569.1 vs. uniprot
Match: A0A6H5L2U2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L2U2_9PHAE) HSP 1 Score: 387 bits (994), Expect = 9.960e-131 Identity = 205/213 (96.24%), Postives = 208/213 (97.65%), Query Frame = 3 Query: 3 PASTADALSYIDKDYDDPRMKEIVHSLIEEEMAAFEPPDYLADKPLPTTRFKSPLLKSEWARVRAEKPLDLMDTSRYDLQPPQGAAAEDEAAWKRALDNARAQTEHQHNSRLLNLELLQNYGASMWLGHNKAEEGTEAAVASQAKRAREEAESVNLKRKTSQEAAERTLWNLARKRSEGFDKNVQIQLACEGLRAEVKRFKALEAAAKPPPAR 641 PAST DALSYIDKDYDDPRMKEIVHSLIEEEMAAFEPPDYLADKPLPTTRFKSPLLKSEWARVRAEKPLD++DTSRYDLQPPQGAAAEDEAAWKRALDNARAQTEHQHN RLLNLELLQNYGASMWLGHNKAEEGTEAAVASQAKRAREEAE VNLKRKTSQEAAE+TLWNLARKRSEGFDKNVQIQLACEGLRAEVKR KALEA AKPPPAR Sbjct: 16 PASTPDALSYIDKDYDDPRMKEIVHSLIEEEMAAFEPPDYLADKPLPTTRFKSPLLKSEWARVRAEKPLDVIDTSRYDLQPPQGAAAEDEAAWKRALDNARAQTEHQHN-RLLNLELLQNYGASMWLGHNKAEEGTEAAVASQAKRAREEAERVNLKRKTSQEAAEKTLWNLARKRSEGFDKNVQIQLACEGLRAEVKRLKALEAVAKPPPAR 227
BLAST of mRNA_E-siliculosus-1a_M_contig96.17569.1 vs. uniprot
Match: A0A835YMV2_9STRA (Pre-mRNA-splicing factor SPF27 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMV2_9STRA) HSP 1 Score: 166 bits (421), Expect = 3.520e-45 Identity = 96/199 (48.24%), Postives = 134/199 (67.34%), Query Frame = 3 Query: 18 DALSYIDKDYDDPRMKEIVHSLIEEEMAAFEPPDYLADKPLPTTRF---KSPLLKSEWARVRAEKPLDLMDTSRYDLQPPQGAAAEDEAAWKRALDNARAQTEHQHNSRLLNLELLQNYGASMWLGHNKAEEGTEAAVASQAKRAREEAESVNLKRKTSQEAAERTLWNLARKRSEGFDKNVQIQLACEGLRAEVKRFK 605 DAL YIDK+YDDPR +E+VH LIEEEMA F P +YL D+ + K +L +E ARV P+ +D +RY+++ P GA AED AW+ A+ NA+AQ HQ+N R LNLELL NYGA+ WL HNKA G E+ + + KR R+EA+++N +R+ +Q + LW+L R+R E DKN+QI LA L+ ++K++K Sbjct: 9 DALPYIDKEYDDPRTQEVVHGLIEEEMARFRPKEYLRDRAIGHYNLAFKKGSILAAELARVSKGVPMAALDQTRYEVRAPDGAKAEDLGAWRDAVRNAKAQLGHQYN-RQLNLELLGNYGANAWLHHNKALAGMESNMVATGKRLRDEADNINAQRQEAQTGLGQKLWHLDRQRVETADKNLQIALANAALQQQLKKYK 206
BLAST of mRNA_E-siliculosus-1a_M_contig96.17569.1 vs. uniprot
Match: A0A5J4YGH3_9CHLO (Pre-mRNA-splicing factor SPF27 protein n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4YGH3_9CHLO) HSP 1 Score: 119 bits (299), Expect = 3.980e-27 Identity = 82/203 (40.39%), Postives = 123/203 (60.59%), Query Frame = 3 Query: 6 ASTADALSYIDKDYDDPRMKEIVHSLIEEEMAAF--EPPDYLAD-KPLPTTRFKS-PLLKSEWARVRAEKPLDLMDTSRYDLQPPQGAAAEDEAAWKRALDNARAQTEHQHNSRLLNLELLQNYGASMWLGHNKAEEGTEAAVASQAKRAREEAESVNLKRKTSQEAAERTLWNLARKRSEGFDKNVQIQLACEGLRAEVKRF 602 A DAL YID D R + LI+EE+ +P DYLA PLP +RF+ P+L+ E+ARV+A K ++ MDTSR+ L PP + D +AW+ A DNA +Q EHQ+N RLLNLELL +G + HNK+ EG + + ++ +++ +S+N +RK SQE+ R L + ++ + KN++I +AC+ L +EV Sbjct: 17 AGVIDALPYIDGMTSDDRHQ--AEELIKEELKKSNKKPSDYLASFPPLPASRFEGHPILQHEFARVKAGKQMEAMDTSRFHLTPPPASKQNDFSAWRAATDNAHSQLEHQYN-RLLNLELLLRFGPNARRVHNKSLEGQVHRLEKEIEQLQQQKDSINRQRKLSQESDGRALQQMEQQYTALVAKNMEINMACQELESEVSEL 216
BLAST of mRNA_E-siliculosus-1a_M_contig96.17569.1 vs. uniprot
Match: A0A1Y1W5F2_9FUNG (Breast carcinoma amplified sequence 2 n=2 Tax=Linderina pennispora TaxID=61395 RepID=A0A1Y1W5F2_9FUNG) HSP 1 Score: 117 bits (293), Expect = 7.370e-27 Identity = 82/202 (40.59%), Postives = 117/202 (57.92%), Query Frame = 3 Query: 6 ASTADALSYIDKDYDDPRMKEIVHSLIEEEMAAFEPPDYLADKPLPTTRFKS-PLLKSEWARVRAEKPLDLMDTSRYDLQPPQGAAAEDEAAWKRALDNARAQTEHQHNSRLLNLELLQNYGASMWLGHNKAEEGTEAAVASQAKRAREEAESVNLKRKTSQEAAERTLWNLARKRSEGFDKNVQIQLACEGLRAEVKRFKA 608 ++ D+L YIDK+YDDP M++ V SLI++EM PP P TT FK+ LL+ E+ RVRA KPL D RY L+ P+ + + W+ A +NA AQ EHQ N RL+NLELLQ +GA+ W N +EG + R R+E +VN RK Q A L ++ + +EG K ++IQ+A L+ E+ + +A Sbjct: 5 SAAIDSLPYIDKEYDDPSMRDQVSSLIQKEMGRMSPPLL----PKSTTLFKNNDLLRKEYERVRAGKPLPEFDIERYKLEAPEDS--DSVGIWRSAAENAAAQLEHQ-NIRLVNLELLQQFGANSWKLSNYQKEGLLRNIEKATDRHRDEGINVNKARKYEQTEAGIRLRDIEERWTEGVKKCIEIQVASSELKGEIAQLEA 199
BLAST of mRNA_E-siliculosus-1a_M_contig96.17569.1 vs. uniprot
Match: A9SH09_PHYPA (Predicted protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9SH09_PHYPA) HSP 1 Score: 117 bits (293), Expect = 2.000e-26 Identity = 84/202 (41.58%), Postives = 119/202 (58.91%), Query Frame = 3 Query: 12 TADALSYIDKDYDDPRMKEIVHSLIEEEM--AAFEPPDYLAD-KPLPTTRFKS-PLLKSEWARVRAEKPLDLMDTSRYDLQPPQGAAAEDEAAWKRALDNARAQTEHQHNSRLLNLELLQNYGASMWLGHNKAEEGTEAAVASQAKRAREEAESVNLKRKTSQEAAERTLWNLARKRSEGFDKNVQIQLACEGLRAEVKRFK 605 T DAL YID DY DP++K V +I EEM ++ +P D+LA+ P+P+ + P+L E+ RVRA K +D SRY L+PP D AWK A+ NA+AQ +HQ RL NLEL+ NYG + W+ HN+ E +A + A + E E +N +RK +Q+AA L L+ + E KN+ I+ AC L AEV + + Sbjct: 31 TVDALPYIDHDYADPKVKAEVDKMIAEEMRLSSKKPSDFLAELPPVPSINAQDHPMLAKEFDRVRAGKAPVALDLSRYGLEPPPVNKRNDVGAWKSAVQNAKAQLQHQ-TLRLENLELMLNYGTTAWIVHNQHLEAFQARLRDTALEYQREIEILNRERKLNQQAAAVELNLLSSQWKEISQKNLDIEEACLKLEAEVLKLR 231
BLAST of mRNA_E-siliculosus-1a_M_contig96.17569.1 vs. uniprot
Match: UPI001FB0803B (pre-mRNA-splicing factor SPF27 homolog n=1 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB0803B) HSP 1 Score: 116 bits (291), Expect = 4.690e-26 Identity = 83/204 (40.69%), Postives = 117/204 (57.35%), Query Frame = 3 Query: 6 ASTADALSYIDKDYDDPRMKEIVHSLIEEEM--AAFEPPDYLAD-KPLPTTRFKS-PLLKSEWARVRAEKPLDLMDTSRYDLQPPQGAAAEDEAAWKRALDNARAQTEHQHNSRLLNLELLQNYGASMWLGHNKAEEGTEAAVASQAKRAREEAESVNLKRKTSQEAAERTLWNLARKRSEGFDKNVQIQLACEGLRAEVKRFK 605 A DAL YID DY DPR+K+ V L+EEEM ++ +P D+L D PLP + F++ P+L E+ RVRA KP +D SRY L+ P DE AWK+AL A+ +HQ RL NL+L+ YG+ +W HN+ E + V ++ E+ E VN +RK Q+ A L L+ + E KN++IQ AC + V+ K Sbjct: 29 AEMMDALPYIDDDYGDPRVKDEVDRLVEEEMRRSSKKPSDFLKDLPPLPNSNFENHPMLAREYERVRAGKPPVPLDMSRYGLETPSVNKRNDETAWKQALQKAQRLLQHQV-IRLENLDLISKYGSDVWKLHNQRLEVLLSRVQAETAEINEKIEVVNRERKYQQQNASYELNALSAQWKELCQKNIEIQAACATIENHVEEMK 231
BLAST of mRNA_E-siliculosus-1a_M_contig96.17569.1 vs. uniprot
Match: A0A7J7P6K5_9MAGN (Uncharacterized protein n=1 Tax=Kingdonia uniflora TaxID=39325 RepID=A0A7J7P6K5_9MAGN) HSP 1 Score: 115 bits (287), Expect = 2.060e-25 Identity = 79/200 (39.50%), Postives = 120/200 (60.00%), Query Frame = 3 Query: 18 DALSYIDKDYDDPRMKEIVHSLIEEEM--AAFEPPDYLAD-KPLPTTRFKS-PLLKSEWARVRAEKPLDLMDTSRYDLQPPQGAAAEDEAAWKRALDNARAQTEHQHNSRLLNLELLQNYGASMWLGHNKAEEGTEAAVASQAKRAREEAESVNLKRKTSQEAAERTLWNLARKRSEGFDKNVQIQLACEGLRAEVKRFK 605 DAL YID DY DP++KE V LIEEEM + +P D+L D PLP + F++ P+L E+ RVRA KP MDTSRY L+PP D AWK+ L+NA++ +HQ RL NL+L+ + A +W +N+ E + + + A+ ++ E+VN +RK Q+ L ++ + +E KN++IQ AC + +++ K Sbjct: 26 DALPYIDDDYSDPKVKEKVDRLIEEEMRKSTKKPSDFLKDLPPLPKSNFENHPMLAREYERVRAGKPPTTMDTSRYGLEPPPVNKRNDPNAWKQHLENAQSSLQHQV-IRLENLDLMSKHVADVWKHYNQRLEAFLSRIYAMARGYNDDIETVNRERKYHQQNTAVELDAMSAQWNELCKKNIEIQTACASIENYIEKLK 224
BLAST of mRNA_E-siliculosus-1a_M_contig96.17569.1 vs. uniprot
Match: A0A200R445_9MAGN (Pre-mRNA-splicing factor SPF27 n=1 Tax=Macleaya cordata TaxID=56857 RepID=A0A200R445_9MAGN) HSP 1 Score: 114 bits (284), Expect = 4.080e-25 Identity = 83/203 (40.89%), Postives = 118/203 (58.13%), Query Frame = 3 Query: 18 DALSYIDKDYDDPRMKEIVHSLIEEEM--AAFEPPDYLAD-KPLPTTRFKS-PLLKSEWARVRAEKPLDLMDTSRYDLQPPQGAAAEDEAAWKRALDNARAQTEHQHNSRLLNLELLQNYGASMWLGHNKAEEGTEAAVASQAKRAREEAESVNLKRKTSQEAAERTLWN-LARKRSEGFDKNVQIQLAC-------EGLRAE 590 D+L YID DY DP +KE+V L+EEEM + +P DYL D P P + F++ P+L E+ RVRA KP ++ SRY L+PP G D AWK L+NA++ +HQ RL NL+L+ +G +W HN+ E + + + A+ E ESVN +RK Q+ N L+ + E +KN++IQ AC EGLR+E Sbjct: 29 DSLPYIDDDYGDPNVKEVVDKLVEEEMRRSTKKPADYLKDLPPAPKSNFENHPMLAREYERVRAGKPPVTLEMSRYGLEPPPGNKWNDANAWKLHLENAQSSLQHQI-VRLENLDLMSKHGGDIWKHHNQRLEAFLSRMQAMAQGYNERIESVNRERKYHQQQNTAVELNALSMQWKELCEKNIEIQSACAAIENHIEGLRSE 230
BLAST of mRNA_E-siliculosus-1a_M_contig96.17569.1 vs. uniprot
Match: A0A1S3ZAD6_TOBAC (pre-mRNA-splicing factor SPF27 homolog n=4 Tax=Nicotiana TaxID=4085 RepID=A0A1S3ZAD6_TOBAC) HSP 1 Score: 113 bits (283), Expect = 5.360e-25 Identity = 84/204 (41.18%), Postives = 117/204 (57.35%), Query Frame = 3 Query: 6 ASTADALSYIDKDYDDPRMKEIVHSLIEEEM--AAFEPPDYLAD-KPLPTTRFKS-PLLKSEWARVRAEKPLDLMDTSRYDLQPPQGAAAEDEAAWKRALDNARAQTEHQHNSRLLNLELLQNYGASMWLGHNKAEEGTEAAVASQAKRAREEAESVNLKRKTSQEAAERTLWNLARKRSEGFDKNVQIQLACEGLRAEVKRFK 605 A DAL YID DY DP++KE V L+EEEM ++ +P D+L D PLP F++ P+L E+ RVRA KP +DTSRY L+ P DE AWK++L A+ +HQ RL NL+L+ +G +W HN+ E A + SQA E E+VN +RK Q+ L L+ + E KN++IQ AC L +++ K Sbjct: 25 AEVIDALPYIDDDYGDPKVKEEVDRLVEEEMRRSSKKPSDFLKDLPPLPKFNFENHPMLAREYERVRAGKPPVQIDTSRYGLEVPPLNKRNDETAWKQSLQKAQRLLQHQV-IRLENLDLMSKHGPDVWKLHNQRLEAFLARMQSQAVELNEMIETVNRERKYHQQTTAYELSALSMQWKELCLKNMEIQSACGELEDHIEQLK 227
BLAST of mRNA_E-siliculosus-1a_M_contig96.17569.1 vs. uniprot
Match: E4X7T6_OIKDI (Pre-mRNA-splicing factor SPF27 n=2 Tax=Oikopleura dioica TaxID=34765 RepID=E4X7T6_OIKDI) HSP 1 Score: 112 bits (279), Expect = 8.290e-25 Identity = 74/199 (37.19%), Postives = 116/199 (58.29%), Query Frame = 3 Query: 18 DALSYIDKDYDDPRMKEIVHSLIEEEMAAFEPP-DYLADKPLPT-TRFKSPLLKSEWARVRAEKPLDLMDTSRYDLQPPQGAAAEDEAAWKRALDNARAQTEHQHNSRLLNLELLQNYGASMWLGHNKAEEGTEAAVASQAKRAREEAESVNLKRKTSQEAAERTLWNLARKRSEGFDKNVQIQLACEGLRAEVKRFKA 608 DAL Y D+ YD+P ++E LIE+EM F P +YL P P +F +PLLK+E AR++A+KP++LM T RY L P D AW +A++N++AQ +HQ R+ NLEL+ +YG+ WL +N+ + ++ ++ R++ + VN +RK +Q+ A +TL L + + KN +I+ L E KA Sbjct: 8 DALPYFDRGYDEPGVREAAIELIEKEMHKFPPTKNYLEHLPAPDHDKFLTPLLKAEIARIKAKKPMELMQTERYTLPAPTPGLRHDPEAWNKAVENSKAQLQHQL-VRIENLELMSDYGSQAWLKYNETLNQMVSDAQNKLQQLRKDIQEVNWQRKDTQQRAGQTLARLENEWATLVHKNYEIEEVLIKLENEKNNMKA 205 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig96.17569.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig96.17569.1 >prot_E-siliculosus-1a_M_contig96.17569.1 ID=prot_E-siliculosus-1a_M_contig96.17569.1|Name=mRNA_E-siliculosus-1a_M_contig96.17569.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=195bp MKEIVHSLIEEEMAAFEPPDYLADKPLPTTRFKSPLLKSEWARVRAEKPLback to top mRNA from alignment at E-siliculosus-1a_M_contig96:155779..159502+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig96.17569.1 ID=mRNA_E-siliculosus-1a_M_contig96.17569.1|Name=mRNA_E-siliculosus-1a_M_contig96.17569.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=3724bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:155779..159502+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig96:155779..159502+ >mRNA_E-siliculosus-1a_M_contig96.17569.1 ID=mRNA_E-siliculosus-1a_M_contig96.17569.1|Name=mRNA_E-siliculosus-1a_M_contig96.17569.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1170bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:155779..159502+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |