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Homology
BLAST of mRNA_E-siliculosus-1a_M_contig96.17567.1 vs. uniprot
Match: A0A6H5L3V4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3V4_9PHAE) HSP 1 Score: 312 bits (800), Expect = 9.760e-101 Identity = 163/174 (93.68%), Postives = 167/174 (95.98%), Query Frame = 3 Query: 9 ERASCRHARHRGPPRHLMSTSGNSPEDIDEVRQRLMASSNYNEMVGRIEGNSPFLEAGDKGSAKEGEESPILPVLRQTVRVVVDVAIGLVPVVLVVTYVKFPPPLLEALGSAATAIKGSPLEPVLEALPWEPAVVLKWAAQGGVAVLLSPVTDRLVVSPAIHQWVQAKLRSLSS 530
E A CR ARH+GPPRHLMST+GNSPEDIDEVRQRLMASS Y+EMVGRIEGNSPFLEAGDKGSAKEGEESPILPVLRQTVRVVVDVA+GLVPVVLVVTY K PPPLLEALGSAATAIKGSPLEPVLEALPWEP VVLKWAAQGGVAVLLSPVTDRLVVSPAIHQWVQAKLRSLSS
Sbjct: 36 EHALCRQARHQGPPRHLMSTAGNSPEDIDEVRQRLMASSKYDEMVGRIEGNSPFLEAGDKGSAKEGEESPILPVLRQTVRVVVDVAVGLVPVVLVVTYAKLPPPLLEALGSAATAIKGSPLEPVLEALPWEPVVVLKWAAQGGVAVLLSPVTDRLVVSPAIHQWVQAKLRSLSS 209
BLAST of mRNA_E-siliculosus-1a_M_contig96.17567.1 vs. uniprot
Match: D8LQA5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQA5_ECTSI) HSP 1 Score: 289 bits (739), Expect = 2.320e-92 Identity = 153/157 (97.45%), Postives = 153/157 (97.45%), Query Frame = 3 Query: 60 MSTSGNSPEDIDEVRQRLMASSNYNEMVGRIEGNSPFLEAGDKGSAKEGEESPILPVLRQTVRVVVDVAIGLVPVVLVVTYVKFPPPLLEALGSAATAIKGSPLEPVLEALPWEPAVVLKWAAQGGVAVLLSPVTDRLVVSPAIHQWVQAKLRSLSS 530
MSTSGNSPEDIDEVRQRLMASSNYNEMVGRIEGNSPFLEAGDKGSAKEGEESPILPVLRQTVRVVVDVAI LVPVVLVVTY K PPPLLEALGSAAT IKGSPLEPVLEALPWEPAVVLKWAAQGGVAVLLSPVTDRLVVSPAIHQWVQAKLRSLSS
Sbjct: 1 MSTSGNSPEDIDEVRQRLMASSNYNEMVGRIEGNSPFLEAGDKGSAKEGEESPILPVLRQTVRVVVDVAITLVPVVLVVTYAKLPPPLLEALGSAATTIKGSPLEPVLEALPWEPAVVLKWAAQGGVAVLLSPVTDRLVVSPAIHQWVQAKLRSLSS 157
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 474 |
| Model size | 1703 |
| Exons | 2 |
| Ec32 ortholog | Ec-26_005530.1 |
| Ec32 ortholog description | expressed unknown protein |
| Hectar predicted targeting category | other localisation |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622936529.6480634-UTR-E-siliculosus-1a_M_contig96:151798..152968 | 1622936529.6480634-UTR-E-siliculosus-1a_M_contig96:151798..152968 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig96 151799..152968 - |
| 1696251118.4796658-UTR-E-siliculosus-1a_M_contig96:151798..152968 | 1696251118.4796658-UTR-E-siliculosus-1a_M_contig96:151798..152968 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig96 151799..152968 - |
| 1622936529.7234695-UTR-E-siliculosus-1a_M_contig96:153940..153999 | 1622936529.7234695-UTR-E-siliculosus-1a_M_contig96:153940..153999 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig96 153941..153999 - |
| 1696251118.5064354-UTR-E-siliculosus-1a_M_contig96:153940..153999 | 1696251118.5064354-UTR-E-siliculosus-1a_M_contig96:153940..153999 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig96 153941..153999 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622936529.6652327-CDS-E-siliculosus-1a_M_contig96:152968..153124 | 1622936529.6652327-CDS-E-siliculosus-1a_M_contig96:152968..153124 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig96 152969..153124 - |
| 1696251118.4884818-CDS-E-siliculosus-1a_M_contig96:152968..153124 | 1696251118.4884818-CDS-E-siliculosus-1a_M_contig96:152968..153124 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig96 152969..153124 - |
| 1622936529.7093127-CDS-E-siliculosus-1a_M_contig96:153622..153940 | 1622936529.7093127-CDS-E-siliculosus-1a_M_contig96:153622..153940 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig96 153623..153940 - |
| 1696251118.4972067-CDS-E-siliculosus-1a_M_contig96:153622..153940 | 1696251118.4972067-CDS-E-siliculosus-1a_M_contig96:153622..153940 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig96 153623..153940 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig96.17567.1 >prot_E-siliculosus-1a_M_contig96.17567.1 ID=prot_E-siliculosus-1a_M_contig96.17567.1|Name=mRNA_E-siliculosus-1a_M_contig96.17567.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=158bp
MSTSGNSPEDIDEVRQRLMASSNYNEMVGRIEGNSPFLEAGDKGSAKEGE
ESPILPVLRQTVRVVVDVAIGLVPVVLVVTYVKFPPPLLEALGSAATAIK
GSPLEPVLEALPWEPAVVLKWAAQGGVAVLLSPVTDRLVVSPAIHQWVQA
KLRSLSS* back to topmRNA from alignment at E-siliculosus-1a_M_contig96:151799..153999- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_M_contig96.17567.1 ID=mRNA_E-siliculosus-1a_M_contig96.17567.1|Name=mRNA_E-siliculosus-1a_M_contig96.17567.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=2201bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:151799..153999- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CTCGACCTGAGCGCGCATCGTGCCGCCATGCCCGACACCGAGGCCCGCCT
CGCCATCTGATGTCCACCTCCGGCAACTCCCCGGAGGACATAGACGAGGT
GCGCCAGCGCCTCATGGCGTCGTCGAACTACAACGAGATGGTCGGTCGAA
TCGAGGGCAACAGCCCCTTCTTGGAGGCGGGAGACAAGGGCAGCGCGAAG
GAGGGGGAAGAGTCGCCGATCTTGCCGGTCTTGCGGCAGACCGTCCGGGT
CGTGGTGGACGTGGCCATCGGGCTTGTGCCGGTGGTGTTGGTCGTCACCT
ACGTCAAGTTTCCCCCGCCGTTGCTGGAGGCGTTGGGATCGGCGGCGACG
GCGATAAAGGGCTCGCCACTAGAACCGGTGAGCGCAAAGGAGGAAGACGA
CGACAGTTGGACCGCCTGCGCGAGAAATTTAGCTCTTGAGGAAATAGAAC
AGGGAGGGGGGATACGCAGACCGTATGTATCCCTGACCCAGCTTCCCTGG
TTGCATGCTTTATCCAACATATTTAGTTGATCGAAAAACCCTGTGAAGGC
CACTGAGATTCTTAGAAGCGAATATCAAACCATTAGCGTTATTATAATAG
TTCGGCTTCGAAAATACACGCCAGACAGATGATGGCACACCGGTTGCATG
AAGGCGATGCCTGGTGGCGGTGTGTCGCATGCTGCTCGTCCCGGAGCGCA
ACGAAGAAACATCAACCTTAGCTTGTGGCACCAAGCAATTTGAATGCACA
GCATCAGTTGGGGCGAACTCAACCCCTCCGAAGGTCGCATCCCGTTTACC
TCTTACAAGTCGGACAGGCCGGAGCTCCATTACATCGTACGCTCTTCCTC
GCCGTCTTTCTCCGATTGGTTACAGGTGCTCGAGGCCCTGCCCTGGGAAC
CGGCGGTGGTGCTTAAATGGGCGGCGCAGGGTGGGGTGGCGGTGCTGCTT
TCCCCGGTTACAGACAGGCTCGTGGTGTCCCCTGCGATACACCAGTGGGT
GCAGGCAAAACTTCGTTCTCTTTCTTCTTAGGCGTGCTTCTTCGTGGCCA
CCTCTTTTTGTGTCTTTCTGGGAAATAGCAGTCCTGATCAACTCGGCAAG
CTTGGTGCACAACAAACAGAGCGTAGATTAGAACGTTCGCACCTTTCCTC
CGCTAAAATCCATGCGTGCATATATCCTGTATTTAGTTTGGGGGGGAGGG
GGTGTGTGTGCGGGGCGTGTTCCCCTGTTCCCCGCTTCCTTTGATATTCA
AGTGCACGGCCGTGTTGTTGAGGCAAATGTAATTTTTTAGCAGGATCGGT
TGGACTTACGCCATGAGTTGCTGCAGATTATGCGTATTTTCGAGCGGGGG
GGCGTGGAACGCGCTCGGGCTCGATGGTCTTTTGCATTGATGGACGACCA
CGAAGCTGAGAGTCACTGCTTGCTCCTCTTGCGCCATCGCCTAGAACAGC
GTGCGTACAAAATGGTTTGAACAAGAAAAATAGGTGTGCATCGGCAAGCA
TCAATCAATTCCTTATTGGAGGACACGTGCGAACGGCTTCGAAGGCATGT
TCATCAGGGTTGTCTTGTGTGGATCTTAGCAGAAATGTGGTGTCTCGCTC
GCCACCACATGCCAGGACCAGTGGGAGCGACCGAATTACAACCGACGTCG
ACCACGCACGTTCGCTAAAATCCACCAAGGACCACTGTGGGACGATTAAA
ATAGCGGCACTGAATTAGATTTTACCTCCCCTCATTCCCCATTGAATCAT
TGAAGGAATTACCACCACGGGTCACATGTATACTGACTGGAAGGAAGAAA
CTTTCGCACCCTTGGTGATGGTACCACGAACGGTTCGTGATCCCTTTGTC
GAAGCCCGCCTGGCCTGCGCAGTATACACCAGGGTCCGAACCAAGTGTCG
AAGGGAAAATGCGGTAGTAGAACCACGTGTGGGTTAGACCGTAGATTTGC
ACGCCGAAAATGGTCCAGAACTCTCTACGGAGTATCTCTACGGAGTAGAC
GGCCCATGTGAGTTTTGGCAAGAAAAGACAGGAAGGCAGGAACCTGTGTT
GCCAAGTTTCACAGGGATGATGTGGCGTTGTGGGCGGGTGATCATTTCAC
GCGACGGACTCATTGTTTCAGCGAAGAAAGAGTCGAGGCTTCAGCAACAC
CGTTGCGCCCGATTTTGTTTTTCTTCATCCTCCTCGTGGTTGTCGCCGAA
A back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_M_contig96:151799..153999- >mRNA_E-siliculosus-1a_M_contig96.17567.1 ID=mRNA_E-siliculosus-1a_M_contig96.17567.1|Name=mRNA_E-siliculosus-1a_M_contig96.17567.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=948bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:151799..153999- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGTCCACCTCCGGCAACTCCCCGGAGGACATAGACGAGGTGCGCCAGCG
CCTCATGGCGTCGTCGAACTACAACGAGATGGTCGGTCGAATCGAGGGCA
ACAGCCCCTTCTTGGAGGCGGGAGACAAGGGCAGCGCGAAGGAGGGGGAA
GAGTCGCCGATCTTGCCGGTCTTGCGGCAGACCGTCCGGGTCGTGGTGGA
CGTGGCCATCGGGCTTGTGCCGGTGGTGTTGGTCGTCACCTACGTCAAGT
TTCCCCCGCCGTTGCTGGAGGCGTTGGGATCGGCGGCGACGGCGATAAAG
GGCTCGCCACTAGAACCGATGTCCACCTCCGGCAACTCCCCGGAGGACAT
AGACGAGGTGCGCCAGCGCCTCATGGCGTCGTCGAACTACAACGAGATGG
TCGGTCGAATCGAGGGCAACAGCCCCTTCTTGGAGGCGGGAGACAAGGGC
AGCGCGAAGGAGGGGGAAGAGTCGCCGATCTTGCCGGTCTTGCGGCAGAC
CGTCCGGGTCGTGGTGGACGTGGCCATCGGGCTTGTGCCGGTGGTGTTGG
TCGTCACCTACGTCAAGTTTCCCCCGCCGTTGCTGGAGGCGTTGGGATCG
GCGGCGACGGCGATAAAGGGCTCGCCACTAGAACCGGTGCTCGAGGCCCT
GCCCTGGGAACCGGCGGTGGTGCTTAAATGGGCGGCGCAGGGTGGGGTGG
CGGTGCTGCTTTCCCCGGTTACAGACAGGCTCGTGGTGTCCCCTGCGATA
CACCAGTGGGTGCAGGCAAAACTTCGTTCTCTTTCTTCTTAGGTGCTCGA
GGCCCTGCCCTGGGAACCGGCGGTGGTGCTTAAATGGGCGGCGCAGGGTG
GGGTGGCGGTGCTGCTTTCCCCGGTTACAGACAGGCTCGTGGTGTCCCCT
GCGATACACCAGTGGGTGCAGGCAAAACTTCGTTCTCTTTCTTCTTAG back to top
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