Homology
BLAST of mRNA_E-siliculosus-1a_M_contig96.17563.1 vs. uniprot
Match: D8LQA8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQA8_ECTSI) HSP 1 Score: 245 bits (625), Expect = 4.110e-82 Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 1 Query: 1 MPHTAGQGLARHRLPGDTRGGEEEEEAGSDHDARESSERYFSARWMLERERAREESDDCSQAFAIIPVVGVCLMVLYVVWLDQASQGLLVWLAGGSPLAELVPFKMLGEMVGGGDEMAIPGAYA 372
MPHTAGQGLARHRLPGDTRGGEEEEEAGSDHDARESSERYFSARWMLERERAREESDDCSQAFAIIPVVGVCLMVLYVVWLDQASQGLLVWLAGGSPLAELVPFKMLGEMVGGGDEMAIPGAYA
Sbjct: 1 MPHTAGQGLARHRLPGDTRGGEEEEEAGSDHDARESSERYFSARWMLERERAREESDDCSQAFAIIPVVGVCLMVLYVVWLDQASQGLLVWLAGGSPLAELVPFKMLGEMVGGGDEMAIPGAYA 124
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 375 |
| Model size | 375 |
| Exons | 2 |
| Ec32 ortholog | Ec-26_005490.1 |
| Ec32 ortholog description | expressed unknown protein |
| Hectar predicted targeting category | signal anchor |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622936529.2627795-CDS-E-siliculosus-1a_M_contig96:138513..138683 | 1622936529.2627795-CDS-E-siliculosus-1a_M_contig96:138513..138683 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig96 138514..138683 - |
| 1696251118.36771-CDS-E-siliculosus-1a_M_contig96:138513..138683 | 1696251118.36771-CDS-E-siliculosus-1a_M_contig96:138513..138683 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig96 138514..138683 - |
| 1622936529.2799377-CDS-E-siliculosus-1a_M_contig96:141434..141639 | 1622936529.2799377-CDS-E-siliculosus-1a_M_contig96:141434..141639 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig96 141435..141639 - |
| 1696251118.3788667-CDS-E-siliculosus-1a_M_contig96:141434..141639 | 1696251118.3788667-CDS-E-siliculosus-1a_M_contig96:141434..141639 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig96 141435..141639 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig96.17563.1 >prot_E-siliculosus-1a_M_contig96.17563.1 ID=prot_E-siliculosus-1a_M_contig96.17563.1|Name=mRNA_E-siliculosus-1a_M_contig96.17563.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=125bp
MPHTAGQGLARHRLPGDTRGGEEEEEAGSDHDARESSERYFSARWMLERE
RAREESDDCSQAFAIIPVVGVCLMVLYVVWLDQASQGLLVWLAGGSPLAE
LVPFKMLGEMVGGGDEMAIPGAYA* back to topmRNA from alignment at E-siliculosus-1a_M_contig96:138514..141639- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_M_contig96.17563.1 ID=mRNA_E-siliculosus-1a_M_contig96.17563.1|Name=mRNA_E-siliculosus-1a_M_contig96.17563.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=3126bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:138514..141639- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGCCTCACACAGCAGGACAAGGATTGGCGCGGCATCGCTTGCCAGGGGA
CACGAGGGGGGGGGAGGAGGAGGAGGAAGCGGGAAGCGACCACGACGCGA
GAGAGTCGTCGGAGCGGTACTTCTCCGCGAGGTGGATGCTGGAGAGGGAG
CGGGCACGAGAAGAGTCGGACGACTGCTCGCAAGCTTTCGCGATCATCCC
CGTGGGTAAGTCGCAGGGGCCTCCCGTCCGTCTCAGCTCTCTCTCTCGCT
CTCGCTCTCTCTCTCTCTCCGGCAGCGGAAAGCAGCAAATCGTGTTGTTT
GCTCGCGTGGCTCGTTCGGTCACATTTTTGTGTCGATTGGCGTCTTTGCG
TCACATGACGCAACCGCTTGCTTCTACCCTCGCAGCAGGTGAACAGAGTA
GAACAGCATTACTTCGGAACATCCACCGAGGAATGAATGAAACGTTTGGC
AGACAAACATAGCAGCAATGGGCTAAACGTCGATACCGCGTGCGCTAGGG
TGGTCAAAACTCGGCAATCACGATATCCGATGTTGAGCTGGTTGTTGTTT
GTTTGCACTCGCCGCGTCGCGCTCGGATACAAAATGTCGGAAGAGCAGCT
GCTACACCCTACACCCATGGCGGTCGCTGCCAGTGACGAAAAGAGAAAAG
AGCGGATGGTCTACTCAAGGTTTGCTGCTTGTAAAAGCTCTGCTTGATGA
TCTACGGTAACCTGGCCGCTGTTGACCTATGACAGGGTGTTGGAAGGGGG
GGTTCTTCAACCTTCTGCCCGTTGCGAACAGCAGGCAGCAGACAGACGCT
CTTTCGTACCGCCGGGGCATCCCCTGCGTCCCTGAGAGCTTCCACACACC
CAATTATTTGTCATTTTTTTTCGAGAGAGAAGGCGTACTTCACAACATCT
TTGTTTTTCCAAGTCACGGCAGAGCTGTATCAGCCTCGCCTCGCATCAAG
TTTTTCATCAAGACCCATTATGCATTAACGCACTACATGTACACATACGA
GAACCTGGAAAACTCCGAAGTGGTCCGAGTTTTGCCGTGGATCGTAGTCG
GAAATAAATGGACACTCTTTTAGTCTAGTAATAACGTGGTGCACGAGCCG
GCCCCTCTTCGTGCGTGCGTGCTGCGGCCGAGACCCACATGTTGTTGTCG
TGTGTTTATATACGCGATCTCTCGCGCGATTTTCTACTATCAACACCAAC
CACGTGCCCTCGTCAGACAATGGGAGAACGATGGAGCACCCCTTCGAGAC
GAGAAGCTCGTTCGATTCGCCACACTACAATATCGTATCCCCCGCTGTCT
TTCCAAGACTGCTTTTGCGAGGATGCATCAAAGAAGAAACCCGATTCAAA
TGGCAGCGCCTGCGACACGTTTTTGGGTCCTCTGCTGGTGGAACTACGGT
GTAGTGTTGTGATGAGTTCGCGTACTCGAGGTGGTATTCGATGGGTGGGA
CGCCGGAGAACCACGAACTGGTGACAAACGTCATAAATTTGCGAGGGCGT
ATTCAACCTATTACTGTAACTAAGGATGCATGGCTACCATGATTGTAGCT
TAGAGATATGGGTTTCGGGTTTCGTATCCCTAACCCTAACCCTATCTAAC
TCTAACCCCCACCCCGTACCCCCCTACTGAAACCAAGATTAAATATCCTC
GCGAACAGGCTACTGCTGTTCACACACAAGTCGCCCAAGCTCTATTGCCC
CGTGTACACCCTGGGCATGAAACATGAAAAACGGCCCGGCGTAGCATGTA
GCCCCCTGTAGGTAACCGACTTGACAGGACAAACTGGCGGCGATCTCAAT
ATTGGAATTACGTCTGTTGTGCTACAAGTAAACTGGAGTAAAGCTGACGA
TCCCGACAAGGACGACGTGGTGTTGTTGTTGCCAGCGTTACCCCATGGTT
TGAGACGAGAGAAACGTGCTGACCCCCAGCAACTGCTCTTGTGTATGTAC
CCTCACGGCAAACGGGCAAATTTCTGAAGTCGCGAGGTTTCACCAACATG
AAATATACGTAGCCCCAAGAAAAGCCCAACAAGGGAGCGAGGCCCACCTC
TTGAACTCGGAAAGTTAAATAGAGTACCAGTGCGTTAGCATTACAATCAG
AAGTAAGACCAAAGCTGCGTTTGCTGTTACAGTAGTTGGAGGTAGCTATG
TGTGTGATGGTGCGTTGCCATGTTGCCATGGATATGTGGCGAATCAGAAG
TTATGTTCTTACGTCATGGCAAGATTCAAGAATTGTTCCGAGTCATGCAC
CCTTTCTGCTCGCGTGTTGCGCTTGGGTCTAGTTTGTGTTGGGTTCCGAC
TGCATGGTAAACGTGCAAGGCAATAAAAAAACATTGTCAAGGAGAACAGA
GGAAAGCAGCAACATGCTGCAGATGTGGTCGGACTACCGTAGTTCCACAC
AGTGATTACACAGGTGCAGATCGCATTATTAGCACTCCTTACGATTACGT
CGTGGTTCATAAACCGTATTAACGGCCAGTAGTTTGCGGTAGTATACTCT
TTGTGTGAAACCCCGGTCTCCCCGCCCATGCACACAACTAGCTACCTGCA
CGTGCAGGGTAGGCATTCGCCAGTGTGCATTTTCCGTAGAATTGTAAGCA
GATCATTGGCGTACATAGCTACACATTGCGTGTTCCGATGCAATGCGTGT
ATTGAACGACACTGGGTGTTACGCCACACAGGGGTCAGACACGCAAGACA
GGTCGTTCATGGGCAGGGAGACAACAAGATGAAGTTGTTTTTGAATAGGT
ATTCGGGGCTCTTGGTGCGAATCAAGCTGTAAGAGTATCCTTCCGTGGCA
GCAGTCCAATCCTCCAAACGCATATGCGGCAGCCACCAACCACCCGGCCC
CGCTGCTCTCCGACGCCCTCCAACACGCCTTGCATCCCACGTTTCGCACC
CCCTTGTTTCTCTTCCCCGCGGCGGCCGATGCTTCTGGTTGGCCCAACAA
AACCAGTCGGGGTGTGCCTGATGGTCCTGTACGTGGTATGGCTGGACCAG
GCGTCGCAAGGGCTACTCGTTTGGTTGGCCGGGGGATCGCCGCTGGCGGA
GCTCGTTCCTTTCAAGATGCTTGGCGAGATGGTCGGCGGGGGCGATGAAA
TGGCGATTCCTGGGGCGTACGCATGA back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_M_contig96:138514..141639- >mRNA_E-siliculosus-1a_M_contig96.17563.1 ID=mRNA_E-siliculosus-1a_M_contig96.17563.1|Name=mRNA_E-siliculosus-1a_M_contig96.17563.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=750bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:138514..141639- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGCCTCACACAGCAGGACAAGGATTGGCGCGGCATCGCTTGCCAGGGGA
CACGAGGGGGGGGGAGGAGGAGGAGGAAGCGGGAAGCGACCACGACGCGA
GAGAGTCGTCGGAGCGGTACTTCTCCGCGAGGTGGATGCTGGAGAGGGAG
CGGGCACGAGAAGAGTCGGACGACTGCTCGCAAGCTTTCGCGATCATCCC
CGTGGATGCCTCACACAGCAGGACAAGGATTGGCGCGGCATCGCTTGCCA
GGGGACACGAGGGGGGGGGAGGAGGAGGAGGAAGCGGGAAGCGACCACGA
CGCGAGAGAGTCGTCGGAGCGGTACTTCTCCGCGAGGTGGATGCTGGAGA
GGGAGCGGGCACGAGAAGAGTCGGACGACTGCTCGCAAGCTTTCGCGATC
ATCCCCGTGGTCGGGGTGTGCCTGATGGTCCTGTACGTGGTATGGCTGGA
CCAGGCGTCGCAAGGGCTACTCGTTTGGTTGGCCGGGGGATCGCCGCTGG
CGGAGCTCGTTCCTTTCAAGATGCTTGGCGAGATGGTCGGCGGGGGCGAT
GAAATGGCGATTCCTGGGGCGTACGCATGATCGGGGTGTGCCTGATGGTC
CTGTACGTGGTATGGCTGGACCAGGCGTCGCAAGGGCTACTCGTTTGGTT
GGCCGGGGGATCGCCGCTGGCGGAGCTCGTTCCTTTCAAGATGCTTGGCG
AGATGGTCGGCGGGGGCGATGAAATGGCGATTCCTGGGGCGTACGCATGA back to top
|