mRNA_E-siliculosus-1a_M_contig96.17562.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E-siliculosus-1a_M_contig96.17562.1
Unique Name	mRNA_E-siliculosus-1a_M_contig96.17562.1
Type	mRNA
Organism	Ectocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)

Homology

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BLAST of mRNA_E-siliculosus-1a_M_contig96.17562.1 vs. uniprot
Match: D8LQA9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQA9_ECTSI)

HSP 1 Score: 265 bits (677), Expect = 1.460e-84
Identity = 139/142 (97.89%), Postives = 140/142 (98.59%), Query Frame = 1

Query:    1 MLNPMLPDEVAVKQVPKQRFSGVKELFAFRHFQGIVLARRLHFVGQVWNVVWSTLVLFGIFREGTALGIIVAIIVYPIFVFYMACFLRLMSELAVSVLLLPSLLARSQGNGGRGAVAEPVGVGDADLAAYGVSGVDDAGTIV 426
            MLNPMLPDEVAVKQVPKQRFSGVKELF FRHFQGIVLARRLHFVGQVWNVVWSTLVLFGI REGTALGIIVAIIVYPIFVFYMACFLRLMSELAVSVLLLPSLLA+SQGNGGRGAVAEPVGVGDADLAAYGVSGVDDAGTIV
Sbjct:    1 MLNPMLPDEVAVKQVPKQRFSGVKELFVFRHFQGIVLARRLHFVGQVWNVVWSTLVLFGILREGTALGIIVAIIVYPIFVFYMACFLRLMSELAVSVLLLPSLLAKSQGNGGRGAVAEPVGVGDADLAAYGVSGVDDAGTIV 142

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BLAST of mRNA_E-siliculosus-1a_M_contig96.17562.1 vs. uniprot
Match: A0A6H5L548_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L548_9PHAE)

HSP 1 Score: 243 bits (619), Expect = 7.710e-76
Identity = 127/142 (89.44%), Postives = 132/142 (92.96%), Query Frame = 1

Query:    1 MLNPMLPDEVAVKQVPKQRFSGVKELFAFRHFQGIVLARRLHFVGQVWNVVWSTLVLFGIFREGTALGIIVAIIVYPIFVFYMACFLRLMSELAVSVLLLPSLLARSQGNGGRGAVAEPVGVGDADLAAYGVSGVDDAGTIV 426
            MLNPMLPDEVAVKQVP+Q F GVKELFAFRHFQGIVLARRLH+V QVWNVVWSTLVL  +FREG  L IIVAII+YPIFVFYMACFLRLMSEL VSVLLLPSLLA+SQGNGGRGAVAEPVGVGDADLAAYGVSGVD AGTIV
Sbjct:    1 MLNPMLPDEVAVKQVPRQHFYGVKELFAFRHFQGIVLARRLHYVAQVWNVVWSTLVLSTVFREGNPLAIIVAIIIYPIFVFYMACFLRLMSELTVSVLLLPSLLAKSQGNGGRGAVAEPVGVGDADLAAYGVSGVDGAGTIV 142

The following BLAST results are available for this feature:

BLAST of mRNA_E-siliculosus-1a_M_contig96.17562.1 vs. uniprot

BLAST of mRNA_E-siliculosus-1a_M_contig96.17562.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 2

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description
D8LQA9_ECTSI	1.460e-84	97.89	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5L548_9PHAE	7.710e-76	89.44	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E-siliculosus-1a_M_contig96:132126..136513+
coding sequence from alignment at E-siliculosus-1a_M_contig96:132126..136513+

protein sequence of mRNA_E-siliculosus-1a_M_contig96.17562.1

>prot_E-siliculosus-1a_M_contig96.17562.1 ID=prot_E-siliculosus-1a_M_contig96.17562.1|Name=mRNA_E-siliculosus-1a_M_contig96.17562.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=143bp
MLNPMLPDEVAVKQVPKQRFSGVKELFAFRHFQGIVLARRLHFVGQVWNV
VWSTLVLFGIFREGTALGIIVAIIVYPIFVFYMACFLRLMSELAVSVLLL
PSLLARSQGNGGRGAVAEPVGVGDADLAAYGVSGVDDAGTIV*

mRNA from alignment at E-siliculosus-1a_M_contig96:132126..136513+

Legend: polypeptideCDSUTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E-siliculosus-1a_M_contig96.17562.1 ID=mRNA_E-siliculosus-1a_M_contig96.17562.1|Name=mRNA_E-siliculosus-1a_M_contig96.17562.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=4388bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:132126..136513+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGTTGAACCCCATGCTACCCGATGAAGTGGCTGTGAAGCAGGTCCCGAA
GCAGCGCTTCTCTGGCGTGAAGGAGCTGTTTGCCTTTCGACACGTGAGTC
AACGGAGCTGGTCGCCCCGTAGCTGCCGTCCTCCCTGCGTAACTGCTGTG
CTGTTCTGCAGAGGCCCAAAACTGTACCGCAGTACTAGCACGTTGTTCAT
AACTAAATATCGCGTATATATACGGCAATAGTGATGTAAAGAGAAGCGGT
CTACTATTCGGCCGTGTGGCATGTGGGTTTAACTCGAAATCTCCCCCGAC
AACCGGGCAAATGTATCATTTTGCAACACAGAACAGTTAGTTAGCTCCTT
CTTTACAGCAGCCGAACATCCGCAAATTCTCAGATACCGCAAGAGGCGGA
GAGAGGGCACCCCCCTTGACCGACGTTCAAAAGTCCATTACTCCACAACC
AAGCTTCGCCAATACCAACAATGGTGGTGTTGGAAACATCTCGTCGAGGG
CTTTCCGTAGTCGTATTTGGGCTCTTTCCACACCCGTTTGGTTGTGGAGC
AACCGAGCTTTGAAGGTCGATCAAGGGGAGGTGCCAGCTCTCCCCCCTCT
TGCGGTGCTCTTATGTCACCCATCCGCCCACCCACCCGCACTCGGCAACA
AGCCCTGGTGGGCTATACCTAAGGCAGCGGACAAATATGTGGGCGAGTTG
GTCGGCGGTTGGCAGACGGTGTGTTCGTGTTGCCAAACTGCGCTCTTCTT
GTCCGTGTCCCGCGAAAGGAGTTTATTACCTAACGCGGCGTGCACAGGAA
GGAGAAAATGGCATAGCTCGGAGGCAGTCGAAACCGCTGTTCGTTCTTGC
AAGACAAAAGAAAATTTACGCTATCCCATATACACAACGGGGAGAGTCAA
CCGCAAGAGAATGACAACACGGTGAAACGTCTTGTTTTAACAAGCTCAAG
GTTATTTTTGCAACAGCTCTCGCTGTAGTAGTGATGCCCCTTTTTCTAGC
AAATACGAAGACAGTGTTCCCGAAAGGAAAACCGTTATCATTGATATCTG
ACAACGTTAATGAAAATTCTTCACGATGTGACAGATGTACTCGACTGAGA
CGTGGTTGAAGGTATGCAGCCGAGTTCGCTATTTCAAAAGTATTATTGTA
AAACTACTTGGGCCGCTGCTAACTACTAGCGATTGGTTCGAGTCGATTTT
CTTCGCGGACACACGACGAGTGATGTGGTGGCGATCCAAATTCTAGCCGC
CGACACGGATGTCATTTTTTATCGCGTAACGAAATATTCGATAACTCGGT
CTCGTTGTGTCTATAATCACCAAATGTTTCGCATGAAGCTGGTCACCCAG
AGAGCTGAACTGGCTCAGCCGCAGTACGTTGAGACGGGATCCGGAGGAAA
CCTTCTCTTCTTTGGTATATTTGATATCGCTTTTTTGTACAGGCTGCAAC
GCTGGTAGTAACCGCATCTTTCCCTTTCCACCCCACGTCCCTGCCCCACC
GTCCATACGACCATGCACAAGAAGTGCGGTGATGTTGGATGGGGAAATTT
CGAAGTACGTGGATATACTCCAAGGAGTCGCACAGGGCTGTACGATGTCA
CCCACTCTTTTTAAGATTTACATCAACGATTTGATCAGGGCGGTTGAAGC
AGTAGGACAGGGAGTCCAAGTAGGGGGAAAGAGTGTGTCCGGACTGATGT
TTGCAGATGATTTCGTGGGGGTATCCGACACACCAGAAGGGTTGCAGGAA
CAAATAGATGCGGCGGTAGGATACACCCGAAAATGGAGACTGTCGGCGAA
CGTAGGAAAATGCGCTGTAGTGGTCTGTAACGAAGACAAGAAAAATCCCG
TAGAATTCAAATGGAAATGGGGGGAGGAAGAACTACCGGTAGTAGACAAG
TATACGTACCTGGGAGTAGAGATTTCGAAGGAGTGCTCATGGGACGCACA
CATAGCAAAGTTGATTGGGAAGGGTAAAGCTCAGATAGGCAAGATGGACG
AGATCCTTACGGACCCACACCTAGACACTAGGATTAAGAGGTGTATTCTC
TTGAATGTGATTGTACCTAAGCTAGAGTATGCAGGAGAGGTATGGGAAGG
TAACGTAAAGGCCGTCAAGCAGCTGGAAACGGTGCAGATGGCAGCGGCCA
AGAAAATACTAGGATGTTCGAGTACAACGAGCAACACTGTATTGAGAGCA
GAACTGGGAATGTACTCTCTTAAAACAAAGAGAGACATGCAGAAGTTGAA
TTGGCAGTACAAGGTAAGTAGAATGTCGGACGATAGACTACCAGCCATGG
TTGACAAGGCAGCTTGGGGAAAAGCGACCCCAGGGAAGAAGGGAATCAGA
TGGGACAAGGTGGTAGAGAAGGTTTGGAAGGAGATAGGAGACGAGGAGGA
GACGTTGGACACGGAAGGGTTCGGGGGGTTCAAGACGACAGTCAAGGAGA
TGCTAGAAAGTAGGGAGGAGGCAACCCTTCGGAAGAAGGTACGAAGCGAA
GACCACTTGGAGATATACGGGAAGTTGAAAGAAGGGATAGGGATGAAGAC
GTACTTGGACGGCCCCATGGACTACGCGAAAAAGCTGAAATTGCAATTTC
GAGTAGGCGATCTGGACTTGCCAGAACGAAGGAAGAGGTATACCAGCCGT
AGGAGAGAGGAAGAGGAGGATAGACACACATGTCCATGTGGCAAATCGGA
GGAGAGTAGACCCCACATCGTTGGGGAGTGTGAGTTGTACAGGAAGGAAA
GAGAGGGTCTCGAGGAGGACATGAGAGAGAGAGGGTGTGACATGGACAAG
TTTGGTAAACTAGACAATAGCGAAAAAACGATCGCGATCATTGGGGATAG
ATGGTGGGCACAAGAGGCCGTAGAGGACGGGGACAAGATGTGCAAGAAAT
TTTTATGTAGTTTGTGGCAGAAACGTAAAGAGCTCCCAAATGTTGGTGGT
GTCTCTAGTAGGGGTAGGAACGGTGCTCCGTCTCGAAAGGGACGCGTGGT
CAATGGTCAAATGACTACGGCAAGCAACAAATGAGTACGCCCCCGCGCGC
GCTACTCTTTTAATGCTGTTCTTGTTATTATTTTTTCGCAGTTCCAAGGC
ATTGTTCTGGCGCGTAGATTGCACTTCGTCGGTCAGGTGTGGAACGTGGT
GTGGTCGACGCTGGTGCTTTTCGGGATCTTCAGGGAGGGAACCGCGCTCG
GCATCATAGTCGCGATCATCGTTTACCCCATCTTCGTCTTCTACATGGCC
TGCTTCCTCCGGCTCATGTCCGAGCTGGCCGTGTCCGTGCTGCTCTTGCC
GAGTCTCCTTGCTAGGAGCCAAGGAAACGGAGGGAGAGGGGCGGTGGCAG
AGCCTGTCGGCGTAGGCGATGCTGACTTGGCGGCGTACGGTGTTTCTGGT
GTTGACGACGCTGGCACGATAGTATGACACCGGGAAAGACATGTAGGAAG
GCCCCGTAACCGTGTCGGAGTTTGTATGAATAGGGGCCCCGTGGCATCAT
CCTTTTTCTCGGCGATGGTTGTTGCGTCCAGGCGACGCCATGCTCGCCTG
CTACAGGCAGTGGTGGTGACACGATGCAGCTTTGTGCCTCCACAGCAGTA
GGTAGCGAAATGCGTTCGGTGGGTGGGGCTGCTTCTCGTGAAGTGTTGGC
TCTAGGGTACCCAATCTGTGTTTACTTCGCAAGTCTATCGGTCAAAGCCG
GCATTTCGCCGATGATGCTGAATATAAGCTTCGGCCATTCATCTGTTCCT
GGTGGGACTGGCACTGCTGGCGGTACGTATGTTCACAGATCACAGCAGCA
TCGGCCTTCTTGCGCCCTCGTGCTCGCGGGAGGGGGAAACCGTGTCGCAG
TATTCTACGCAGGTTTTTCTGAGTAAATGTACCTTCCGGACAGAGTATAG
AATCGGGGTTAGGGCTTGGGTTTGCGTGCCCCCTGCCTGTTCTTTTTTCG
TAGTAAACAAACTTTTTTTGCGTATGCAGTCCAGCCGCCGTGTTGCTTGT
TATGGCTGCGTTTCTCTGGTCTTGGTGATGCCAGCTAGTAGCTTCCTTCT
CTTGTTGATGGATACTACGGCGGTTTGTTCTGTTTGTTCTGCCAAGTTTT
GGGTGAACTTGCACTTTATGACCCTAGAAGTAGTCTTCTTGCTCTGGCGA
AAGAGCAGGGAAGAAGCGGTACTGGACAGAGTTCGGAACGAATTCTCCAA
AACATTTGTGGCACGCAGTTCGCTGATTGGTAAAAAAAAACTGTGAAGAC
GGCAAACACGAATGAGTATCTACGATACGATGAAAAGTTTTCCTGAGGTG
GTGCCGCTCGTGCTGGCGTAGACCCTCGCAACACCGCGTTACGCTTACTT
GCGTTCAAGACGATCTACAGAAGGTTTCATGATATGCG

Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig96:132126..136513+

>mRNA_E-siliculosus-1a_M_contig96.17562.1 ID=mRNA_E-siliculosus-1a_M_contig96.17562.1|Name=mRNA_E-siliculosus-1a_M_contig96.17562.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=858bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:132126..136513+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGTTGAACCCCATGCTACCCGATGAAGTGGCTGTGAAGCAGGTCCCGAA
GCAGCGCTTCTCTGGCGTGAAGGAGCTGTTTGCCTTTCGACACATGTTGA
ACCCCATGCTACCCGATGAAGTGGCTGTGAAGCAGGTCCCGAAGCAGCGC
TTCTCTGGCGTGAAGGAGCTGTTTGCCTTTCGACACTTCCAAGGCATTGT
TCTGGCGCGTAGATTGCACTTCGTCGGTCAGGTGTGGAACGTGGTGTGGT
CGACGCTGGTGCTTTTCGGGATCTTCAGGGAGGGAACCGCGCTCGGCATC
ATAGTCGCGATCATCGTTTACCCCATCTTCGTCTTCTACATGGCCTGCTT
CCTCCGGCTCATGTCCGAGCTGGCCGTGTCCGTGCTGCTCTTGCCGAGTC
TCCTTGCTAGGAGCCAAGGAAACGGAGGGAGAGGGGCGGTGGCAGAGCCT
GTCGGCGTAGGCGATGCTGACTTGGCGGCGTACGGTGTTTCTGGTGTTGA
CGACGCTGGCACGATAGTATGATTCCAAGGCATTGTTCTGGCGCGTAGAT
TGCACTTCGTCGGTCAGGTGTGGAACGTGGTGTGGTCGACGCTGGTGCTT
TTCGGGATCTTCAGGGAGGGAACCGCGCTCGGCATCATAGTCGCGATCAT
CGTTTACCCCATCTTCGTCTTCTACATGGCCTGCTTCCTCCGGCTCATGT
CCGAGCTGGCCGTGTCCGTGCTGCTCTTGCCGAGTCTCCTTGCTAGGAGC
CAAGGAAACGGAGGGAGAGGGGCGGTGGCAGAGCCTGTCGGCGTAGGCGA
TGCTGACTTGGCGGCGTACGGTGTTTCTGGTGTTGACGACGCTGGCACGA
TAGTATGA