mRNA_E-siliculosus-1a_M_contig96.17556.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig96.17556.1 vs. uniprot
Match: A0A6H5JKU4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKU4_9PHAE) HSP 1 Score: 471 bits (1212), Expect = 1.940e-158 Identity = 336/389 (86.38%), Postives = 344/389 (88.43%), Query Frame = 3 Query: 3 RLHRCFATGVYMAAQSFFYRGAAFRGLGSGSCSNGLRAGRLAGRVNHXXXXXLHLLANPTATSAHRRISSNMMIGSGSSRPPASAADPRGRIHELATSSXXXXXXXXXXXXXXXXXXXXXRSEDEKDGRQAGKARGDGSPLRGGGAGGHGAPV------RVKKRESAGEDGDARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPQLPLFGLDIPEDRVHVVDTPEGVRDAAAVLSRSVLMSIDTETQPSFAVGEWHPTSLLQVATRDADGEEDVLVIDLLSLKDGLLLPESLSEALSGPFGSPNVVKLAG-----VGLANDLDEMSFAFENTPFLQQVPGVLNLNALNIKLTGGACDDQGTPRDLGLRKLASM 1136
RL+RC TGVYMAAQSFF RGA+FRGLGSGSCSNGLRAGRLAGRVNH LH+LANPTATSA RISSNMMIGS SRPPASAADPR IHELATSSXXXXXXXXXXXXXXXXXXXXX EDEKD RQAGKA GDGSP RGG G H RVKKRESAGEDGD RXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPQLPLFGLDIPEDRVHVVDTPEGVRDAAAVL RSVLMS+DTETQPSFAVGEWHPTSLLQVATRDA+GEEDVLVIDLLSLKDGL LPESLSEALSGPFGSP+VVKL G VGLANDLDEMSFAF+ TPFL+QVPGVLNLNALN KLTGG CDDQG PRDLGLRKLASM
Sbjct: 2 RLNRCLVTGVYMAAQSFFSRGASFRGLGSGSCSNGLRAGRLAGRVNHRHRH-LHVLANPTATSADTRISSNMMIGS--SRPPASAADPRCPIHELATSSXXXXXXXXXXXXXXXXXXXXXXXEDEKDRRQAGKAGGDGSPPRGGRLGSHXXXXXXXXXGRVKKRESAGEDGDGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPQLPLFGLDIPEDRVHVVDTPEGVRDAAAVLGRSVLMSVDTETQPSFAVGEWHPTSLLQVATRDANGEEDVLVIDLLSLKDGLFLPESLSEALSGPFGSPSVVKLGGPLHVGVGLANDLDEMSFAFDKTPFLEQVPGVLNLNALNTKLTGGVCDDQGIPRDLGLRKLASM 387
BLAST of mRNA_E-siliculosus-1a_M_contig96.17556.1 vs. uniprot
Match: D8LQB4_ECTSI (3\'-5\' exonuclease family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQB4_ECTSI) HSP 1 Score: 357 bits (916), Expect = 6.770e-117 Identity = 185/193 (95.85%), Postives = 187/193 (96.89%), Query Frame = 3 Query: 750 MSIDTETQPSFAVGEWHPTSLLQVATRDADGEEDVLVIDLLSLKDGLLLPESLSEALSGPFGSPNVVKLAGVGLANDLDEMSFAFENTPFLQQVPGVLNLNALNIKLTGGACDDQGTPRDLGLRKLASMYLGRSLSKRQQMSRWARRPLQSAQVNYAACDALVALRVLDALLLALGSLDVRELCTTWTPRRYS 1328
MSIDTETQPSFAVGEWHPTSLLQVATRDADGEEDVLVIDLLSLKDGLLLPESLSEALSGPFGSPNVVKL GVGLANDLDEMSFAFE TPFL+QVPGVLNLNALN KLTGGAC+DQG PRDLGLRKLASMYLGRSLSKRQQMSRWARRPLQSAQVNYAACDALVALRV DALLLALGSLDV ELCTTWTPRRYS
Sbjct: 1 MSIDTETQPSFAVGEWHPTSLLQVATRDADGEEDVLVIDLLSLKDGLLLPESLSEALSGPFGSPNVVKL-GVGLANDLDEMSFAFEETPFLEQVPGVLNLNALNTKLTGGACNDQGIPRDLGLRKLASMYLGRSLSKRQQMSRWARRPLQSAQVNYAACDALVALRVFDALLLALGSLDVGELCTTWTPRRYS 192
BLAST of mRNA_E-siliculosus-1a_M_contig96.17556.1 vs. uniprot
Match: A0A835ZAR5_9STRA (Ribonuclease H-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAR5_9STRA) HSP 1 Score: 142 bits (357), Expect = 5.460e-34 Identity = 90/205 (43.90%), Postives = 129/205 (62.93%), Query Frame = 3 Query: 663 LDIPEDRVHVVDTPEGVRDAAAVLSRSVLMSIDTETQPSFAV-GEWHPTSLLQVATRDADGEEDVLVIDLLSLKDGLLLPESLSEALSGPFGSPNVVKLAGVGLANDLDEMSFAFENTPFLQQVPGVLNLNALNIKLTGGACDDQGTPRDLGLRKLASMYLGRSLSKRQQMSRWARRPLQSAQVNYAACDALVALRVLDALLLAL 1274
LDIP D+V +VDTP ++ A +VL S ++++DTETQP+F H T+LLQ+A+R ADG E V +IDLL+L L E++ AL F S +++K+ G GL D+ E+ + +++ GVL NA++ +L D L L+KL YL SLSK QQMS WA RPL S+Q++YAACDALV LR+ D+++L +
Sbjct: 58 LDIPSDKVTMVDTPAALQWAGSVLRDSSIIALDTETQPNFTPRSPPHRTALLQIASRAADGTEAVFLIDLLALLP--LCAEAMDSALYHCFRSEDILKV-GHGLVQDVRELYMFYPQVAAFRRMNGVLEANAMHKQL------DPEVVNMLSLKKLVLHYLNCSLSKGQQMSNWANRPLSSSQIHYAACDALVLLRLHDSMVLEI 253
BLAST of mRNA_E-siliculosus-1a_M_contig96.17556.1 vs. uniprot
Match: A0A2D4BG54_PYTIN (3'-5' exonuclease domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BG54_PYTIN) HSP 1 Score: 122 bits (307), Expect = 4.750e-27 Identity = 78/210 (37.14%), Postives = 119/210 (56.67%), Query Frame = 3 Query: 639 VPQLPLFGLDIPEDRVHVVDTPEGVRDAAAVLSRSVLMSIDTETQPSFA-VGEWHPTSLLQVATRDADGEEDVLVIDLLSLKDGLLLPESLSEALSGPFGSPNVVKLAGVGLANDLDEMSFAFENTPFLQQVPGVLNLNALNIKLTGGACDDQGTPRDLGLRKLASMYLGRSLSKRQQMSRWARRPLQSAQVNYAACDALVALRVLDALL 1265
+ Q P++ ++ PE+ V VD E + + + ++ IDTET+P F H SLLQ+A R D +E+V ++DLL LK P ++ L G F S +V+KL G L DL E++ ++ + V+ +N ++I L G + L L+KL +YLG+ L+K QQMS W RRPL ++Q++YAACDALV + + D LL
Sbjct: 13 IQQAPMYTIERPEELVKFVDDKETMHYFSERARLATIVGIDTETRPQFRDKHRSHRCSLLQIALRLRDTKEEVFILDLLKLK-----PHMYNKTLLGLFLSQSVIKL-GQSLLGDLKELASSYPGASCFRVAKAVVEVNDMSISL-------MGAHQALSLQKLVFLYLGKRLTKTQQMSNWNRRPLTTSQIHYAACDALVLIHLYDVLL 209
BLAST of mRNA_E-siliculosus-1a_M_contig96.17556.1 vs. uniprot
Match: A0A6H5JNJ5_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNJ5_9PHAE) HSP 1 Score: 119 bits (298), Expect = 1.940e-26 Identity = 60/64 (93.75%), Postives = 62/64 (96.88%), Query Frame = 3 Query: 1137 YLGRSLSKRQQMSRWARRPLQSAQVNYAACDALVALRVLDALLLALGSLDVRELCTTWTPRRYS 1328
YLGRSLSKRQQMSRWARRPLQSAQVNYAACDALVALRV DALLLA+GS+DVRELCTTWTPR YS
Sbjct: 199 YLGRSLSKRQQMSRWARRPLQSAQVNYAACDALVALRVFDALLLAMGSVDVRELCTTWTPRSYS 262
BLAST of mRNA_E-siliculosus-1a_M_contig96.17556.1 vs. uniprot
Match: A0A482SJB0_9ARCH (3'-5' exonuclease domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SJB0_9ARCH) HSP 1 Score: 106 bits (265), Expect = 9.290e-22 Identity = 74/209 (35.41%), Postives = 109/209 (52.15%), Query Frame = 3 Query: 657 FGLDIPEDRVHVVDTPEGVRDAAAVLSRSVLMSIDTETQPSFAVGEW-------HPTSLLQVATRDADGEEDVLVIDLLSLKDGLLLPESLSEALSGPFGSPNVVKLAGVGLANDLDEMSFAFENTPFLQQVPGVLNLNALNIKLTGGACDDQGTPRDLGLRKLASMYLGRSLSKRQQMSRWARRPLQSAQVNYAACDALVALRVLDAL 1262
F D+P+ +H V+ E ++ + V++ IDTET+P F +PTSL+Q+A R + G E V ++D+L+LK LL E L L + +K+ G L ND E+ ++ + Q+V +L+ L+ L + L L+ L YL L K QQMS W+RRPL AQ+ YAACDALV LR+ DA+
Sbjct: 14 FTFDLPQSSLHFVNDVESLQRLRIAFADCVIVGIDTETRPMFVKRNRANQFVRPNPTSLVQMALRSSSGLESVHIVDMLTLKTQGLLNE-LDMVLVTVMCDDHCIKV-GQSLINDFKELRMSYAHMQSFQKVHAILDTTVLSKVLQPELINT------LSLKTLVKQYLHFQLVKGQQMSDWSRRPLGKAQIQYAACDALVLLRLYDAM 214
BLAST of mRNA_E-siliculosus-1a_M_contig96.17556.1 vs. uniprot
Match: A0A024TW10_9STRA (3'-5' exonuclease domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TW10_9STRA) HSP 1 Score: 108 bits (269), Expect = 2.980e-21 Identity = 74/192 (38.54%), Postives = 105/192 (54.69%), Query Frame = 3 Query: 684 VHVVDTPEGVRDAAAVLSRSVLMSIDTETQPSFA-VGEWHPTSLLQVATRDADGEEDVLVIDLLSLKDGLLLPESLSEALSGPFGSPNVVKLAGVGLANDLDEMSFAFENTPFLQQVPGVLNLNALNIKLTGGACDDQGTPRDLGLRKLASMYLGRSLSKRQQMSRWARRPLQSAQVNYAACDALVALRVLD 1256
V + TP + L +V++ +DTET+P F +PTSLLQVA RDA G EDV + DLL+L P ++ L+ F +P+++KL G GL NDL E++ A+ ++ GV+ +NAL ++ G T + L+KL L R L K Q S W RRPL Q+ YAA DALV + + D
Sbjct: 56 VQFLHTPSQLAACHERLRTAVVVGLDTETKPEFKKTAIPNPTSLLQVAVRDAHGAEDVFLFDLLALT-----PSHYNDMLAELFLNPSILKL-GQGLLNDLKELAHAYPTATCFTKMHGVVEVNALFREIEGP------TQPMMSLQKLVYYSLKRKLVKTHQKSNWNRRPLAPGQITYAALDALVLVWIFD 235
BLAST of mRNA_E-siliculosus-1a_M_contig96.17556.1 vs. uniprot
Match: A0A418BAW1_9STRA (T-complex protein 1 subunit gamma n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418BAW1_9STRA) HSP 1 Score: 107 bits (268), Expect = 2.030e-20 Identity = 73/192 (38.02%), Postives = 105/192 (54.69%), Query Frame = 3 Query: 684 VHVVDTPEGVRDAAAVLSRSVLMSIDTETQPSFA-VGEWHPTSLLQVATRDADGEEDVLVIDLLSLKDGLLLPESLSEALSGPFGSPNVVKLAGVGLANDLDEMSFAFENTPFLQQVPGVLNLNALNIKLTGGACDDQGTPRDLGLRKLASMYLGRSLSKRQQMSRWARRPLQSAQVNYAACDALVALRVLD 1256
V + TP + L ++++ +DTET+P F +PTSLLQVA RDA G EDV + DLL+L P ++ L+ F +P+++KL G GL NDL E++ A+ ++ GV+ +NAL ++ G T + L+KL L R L K Q S W RRPL Q+ YAA DALV + + D
Sbjct: 19 VQFLHTPSQLAACHERLRTAIVVGLDTETKPEFKKTAIPNPTSLLQVAVRDAHGAEDVFLFDLLALT-----PSHYNDMLAELFLNPSILKL-GQGLLNDLKELAHAYPTATCFTKMHGVVEVNALFREIEGP------TQPMMSLQKLVYYSLKRKLVKTHQKSNWNRRPLAPGQITYAALDALVLVWIFD 198
BLAST of mRNA_E-siliculosus-1a_M_contig96.17556.1 vs. uniprot
Match: W2R8I8_PHYPN (3'-5' exonuclease domain-containing protein n=8 Tax=Phytophthora TaxID=4783 RepID=W2R8I8_PHYPN) HSP 1 Score: 104 bits (259), Expect = 4.450e-20 Identity = 73/211 (34.60%), Postives = 115/211 (54.50%), Query Frame = 3 Query: 645 QLPLFGLDIPEDRVHVVDTPEGVRDAAAVLSRSVLMSIDTETQPSFAVGEW-HPTSLLQVATRDADGEEDVLVIDLLSLKDGLLLPESLSEALSGPFGSPNVVKLAGVGLANDLDEMSFAFENTPFLQQVPGVLNLNALNIKLTGGACDDQGTPRDLGLRKLASMYLGRSLSKRQQMSRWARRPLQSAQVNYAACDALVALRVLDALLLAL 1274
Q P + +D ++ V + + A L ++ ++ DTET+P ++ + +P++LLQ+A RDA +E+V ++DLL L + + L F S +VKL G +DL E++ ++ GV+ +N L+I L G L L+KL YL R L+K QQMS WARRPL S+Q++YAA DALV + + D LL+ +
Sbjct: 26 QSPQYVIDQSRVPIYFVASKKEWSYCATRLLKAEVIGFDTETRPIWSKHQRPNPSALLQIAVRDASHKEEVFILDLLHLS-----AKVYNTTLKRVFLSKTIVKL-GQSFYHDLQELAQSYPQASCFTVCKGVVEVNDLSISLAG-------PHNPLSLQKLVFFYLHRKLTKTQQMSNWARRPLTSSQLHYAAADALVLIHLYDELLMRM 223
BLAST of mRNA_E-siliculosus-1a_M_contig96.17556.1 vs. uniprot
Match: A0A7S2GX10_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GX10_9STRA) HSP 1 Score: 100 bits (250), Expect = 6.550e-20 Identity = 84/242 (34.71%), Postives = 118/242 (48.76%), Query Frame = 3 Query: 657 FGLDIPEDRVHVVDTPEGVRDAAAVLSRSVLMSIDTETQPSF---------------AVGEW-----------------HPTSLLQVATRDADGEEDVLVIDLLSLKDGLLLPESLSEALSGPFGSPNVVKLAGVGLANDLDEMSFAFENTPFLQQVPGVLNLNALNIKLTGGACDDQGTPRDLGLRKLASMYLGRSLSKRQQMSRWARRPLQSAQVNYAACDALVALRVLDALLLALGSLD 1286
F LDIP+DR+ V +G+ A +L + ++ IDTETQP+F + GE +P +LLQ+A RDA G E VL+ D L L G LS L F S V+KL G GL DL E+ ++ F + + VL ++ L+ + G DQ L+ + +L +L+K+QQ S W RPL Q+ YAACDALV LR+ DA+ +G D
Sbjct: 22 FVLDIPDDRLIYVQNGDGIIQAEEILRTATIIGIDTETQPTFYKYGARNARRKSEGSSAGEKGGEKTSRSPGKKQKFPRNPCALLQIAVRDAAGLETVLLFDTLRLLPGF--ETELSTILGRVFRSHEVLKL-GHGLKQDLFELHASYPLKGF-KALENVLEVDDLSKVVWPG---DQMR----SLQVMVLRFLDSALNKKQQCSNWGHRPLSLKQMEYAACDALVLLRLYDAIRAEIGDRD 252 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig96.17556.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig96.17556.1 >prot_E-siliculosus-1a_M_contig96.17556.1 ID=prot_E-siliculosus-1a_M_contig96.17556.1|Name=mRNA_E-siliculosus-1a_M_contig96.17556.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=467bp MAAQSFFYRGAAFRGLGSGSCSNGLRAGRLAGRVNHHHHRRLHLLANPTAback to top mRNA from alignment at E-siliculosus-1a_M_contig96:89388..94390- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig96.17556.1 ID=mRNA_E-siliculosus-1a_M_contig96.17556.1|Name=mRNA_E-siliculosus-1a_M_contig96.17556.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=5003bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:89388..94390- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig96:89388..94390- >mRNA_E-siliculosus-1a_M_contig96.17556.1 ID=mRNA_E-siliculosus-1a_M_contig96.17556.1|Name=mRNA_E-siliculosus-1a_M_contig96.17556.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=2802bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:89388..94390- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |