mRNA_E-siliculosus-1a_M_contig96.17555.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig96.17555.1 vs. uniprot
Match: D8LQB5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQB5_ECTSI) HSP 1 Score: 197 bits (501), Expect = 2.900e-58 Identity = 157/304 (51.64%), Postives = 168/304 (55.26%), Query Frame = 1 Query: 1 MAMLQAEVHRGACAGPSRLLQLGVELRAGIEARSVCAFGREPRTIVLISEDGSFLTARFSEPGECERISYARFLRGAGAGSDDEGGDEEITRANXXXXXXXXXXVVEYAGAAGFVAEAHVGDPQAKRAKRTAAAATGPPTTSLWPPRGGGDRDHHARVLVYPCRRAPTASGGRPAGPARTTG---------GRDWFPAAVAACVCDL*PSYGDGLQAASFRGESEPSVFGGA--GGRHERRCRCWRGDGRRSWWRGGG-GGLKPPLPEQEFHDGVSDVQASAGGGASEIDGLSGLSEAVSRTAL 876 MAM+QAEVHRGACAGPSRLLQLGVELRAGIEARSVCAFGREPRTIVLISEDGSFLTARFSEPGECERISYARFLRGAGAGSDDEG DEEITRAN XXXXXXX G A + + R + GP G + P+ A+ + D P G + F A GG +E DG G GGLKPP+PEQEFHDG SDVQASAGG ASEIDGLS EAVSRTAL Sbjct: 1 MAMVQAEVHRGACAGPSRLLQLGVELRAGIEARSVCAFGREPRTIVLISEDGSFLTARFSEPGECERISYARFLRGAGAGSDDEG-DEEITRANGEGXXXXXXXXXXLLSTLGQPASSQ----RPTSVTRRPSEPNGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEQRGEGIGFLPSPPASAISD--PPTGTAYKQ-QXXXXXXXXXFSAAPGGGMNEDAGAGGVMDGXXXXXXXXGVGGLKPPVPEQEFHDGDSDVQASAGGEASEIDGLS---EAVSRTAL 293
BLAST of mRNA_E-siliculosus-1a_M_contig96.17555.1 vs. uniprot
Match: A0A6H5LNG1_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LNG1_9PHAE) HSP 1 Score: 105 bits (263), Expect = 6.730e-22 Identity = 86/132 (65.15%), Postives = 87/132 (65.91%), Query Frame = 2 Query: 347 QRPTSVTRRPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEQRGEGIGFLPPSPPASAISDPPTGTAYKQQAFGVNPSPPFSAAPGGGMNEDAGVGGVMDGGVGGEEGG 742 QRPTSVTRRPS XXXXXXXXXXXXXXXX EQ GEGIGFLP S PASAISDP TGTAY+QQAFGVNPSPPFSA PGGGMN AGVGGVMDGGVGGE G Sbjct: 509 QRPTSVTRRPSEPNGPPQQRQXXXXXXXXXXXXXXXXNTTHVLSSTPTVQPQQRPAAAPPAQQEQPGEGIGFLP-STPASAISDPSTGTAYQQQAFGVNPSPPFSA-PGGGMNAAAGVGGVMDGGVGGEAEG 638
BLAST of mRNA_E-siliculosus-1a_M_contig96.17555.1 vs. uniprot
Match: A0A835Z323_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z323_9STRA) HSP 1 Score: 84.3 bits (207), Expect = 1.110e-14 Identity = 35/48 (72.92%), Postives = 43/48 (89.58%), Query Frame = 1 Query: 85 GIEARSVCAFGREPRTIVLISEDGSFLTARFSEPGECERISYARFLRG 228 G+E+RS+CAFG EP TIV++S DGSFL ARF EPGECER+SYA+F+RG Sbjct: 319 GVESRSICAFGAEPNTIVVVSADGSFLLARFDEPGECERVSYAKFIRG 366
BLAST of mRNA_E-siliculosus-1a_M_contig96.17555.1 vs. uniprot
Match: A0A7S2CPD6_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CPD6_9STRA) HSP 1 Score: 77.0 bits (188), Expect = 3.080e-12 Identity = 29/49 (59.18%), Postives = 44/49 (89.80%), Query Frame = 1 Query: 85 GIEARSVCAFGREPRTIVLISEDGSFLTARFSEPGECERISYARFLRGA 231 G+E+ ++CAFG++PRT++++S DGS+L + F+EPGECER+SYARF+R A Sbjct: 324 GLESTTICAFGQDPRTLIVVSADGSYLLSSFAEPGECERVSYARFIRSA 372
BLAST of mRNA_E-siliculosus-1a_M_contig96.17555.1 vs. uniprot
Match: A0A7S2SQE7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SQE7_9STRA) HSP 1 Score: 73.6 bits (179), Expect = 5.190e-11 Identity = 32/57 (56.14%), Postives = 44/57 (77.19%), Query Frame = 1 Query: 88 IEARSVCAFGREPRTIVLISEDGSFLTARFSEPGECERISYARFLRGAGAGSDDEGG 258 +E R++CAFG +P TI+++ DGS+L + F+EPGECE+ISYARF+RG DDE G Sbjct: 355 VEGRTICAFGSKPNTIIVVGMDGSYLLSSFAEPGECEKISYARFIRGPR--EDDESG 409
BLAST of mRNA_E-siliculosus-1a_M_contig96.17555.1 vs. uniprot
Match: A0A7S2CSM6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CSM6_9STRA) HSP 1 Score: 70.9 bits (172), Expect = 3.570e-10 Identity = 27/47 (57.45%), Postives = 41/47 (87.23%), Query Frame = 1 Query: 85 GIEARSVCAFGREPRTIVLISEDGSFLTARFSEPGECERISYARFLR 225 G+E+RS+CAFG+EP T++++S +GS+L + F++PGECERI ARF+R Sbjct: 323 GLESRSICAFGQEPNTLIVVSANGSYLMSSFAQPGECERIHMARFMR 369
BLAST of mRNA_E-siliculosus-1a_M_contig96.17555.1 vs. uniprot
Match: A0A7S3HCS3_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HCS3_9STRA) HSP 1 Score: 65.5 bits (158), Expect = 2.370e-8 Identity = 27/47 (57.45%), Postives = 37/47 (78.72%), Query Frame = 1 Query: 85 GIEARSVCAFGREPRTIVLISEDGSFLTARFSEPGECERISYARFLR 225 GIE RS+CAFG++P IV++S DG+F+ + F E G+C RIS A+FLR Sbjct: 364 GIEGRSICAFGKDPSRIVVVSADGTFIVSSFDEGGDCARISTAKFLR 410
BLAST of mRNA_E-siliculosus-1a_M_contig96.17555.1 vs. uniprot
Match: A0A7S3JWF9_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JWF9_9STRA) HSP 1 Score: 61.6 bits (148), Expect = 4.480e-7 Identity = 24/46 (52.17%), Postives = 36/46 (78.26%), Query Frame = 1 Query: 85 GIEARSVCAFGREPRTIVLISEDGSFLTARFSEPGECERISYARFL 222 G+EA ++CAFG +P T+VL+ DGSFL + F+ GE ER+++A+FL Sbjct: 348 GLEAPTICAFGTQPNTLVLVGADGSFLVSNFARGGEAERLTFAKFL 393
BLAST of mRNA_E-siliculosus-1a_M_contig96.17555.1 vs. uniprot
Match: A0A397A0A0_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397A0A0_9STRA) HSP 1 Score: 55.5 bits (132), Expect = 1.200e-5 Identity = 22/45 (48.89%), Postives = 32/45 (71.11%), Query Frame = 1 Query: 91 EARSVCAFGREPRTIVLISEDGSFLTARFSEPGECERISYARFLR 225 E R++CAFG + TI+++ DGSF A F GECER SY++F++ Sbjct: 139 ETRTICAFGMDKNTILVVGADGSFYKAVFDANGECERTSYSKFIQ 183
BLAST of mRNA_E-siliculosus-1a_M_contig96.17555.1 vs. uniprot
Match: A0A024U4I9_9STRA (Uncharacterized protein n=7 Tax=Aphanomyces TaxID=100860 RepID=A0A024U4I9_9STRA) HSP 1 Score: 55.5 bits (132), Expect = 3.580e-5 Identity = 22/45 (48.89%), Postives = 32/45 (71.11%), Query Frame = 1 Query: 91 EARSVCAFGREPRTIVLISEDGSFLTARFSEPGECERISYARFLR 225 E R++CAFG + TI+++ DGSF A F GECER SY++F++ Sbjct: 272 ETRTICAFGTDKNTILVVGADGSFYKAVFDANGECERTSYSKFIQ 316 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig96.17555.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 18 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig96.17555.1 >prot_E-siliculosus-1a_M_contig96.17555.1 ID=prot_E-siliculosus-1a_M_contig96.17555.1|Name=mRNA_E-siliculosus-1a_M_contig96.17555.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=199bp MAMLQAEVHRGACAGPSRLLQLGVELRAGIEARSVCAFGREPRTIVLISEback to top mRNA from alignment at E-siliculosus-1a_M_contig96:84666..87684+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig96.17555.1 ID=mRNA_E-siliculosus-1a_M_contig96.17555.1|Name=mRNA_E-siliculosus-1a_M_contig96.17555.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=3019bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:84666..87684+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig96:84666..87684+ >mRNA_E-siliculosus-1a_M_contig96.17555.1 ID=mRNA_E-siliculosus-1a_M_contig96.17555.1|Name=mRNA_E-siliculosus-1a_M_contig96.17555.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1194bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:84666..87684+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |