Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 0 |
| Stop | 1 |
| Cds size | 174 |
| Model size | 271 |
| Exons | 2 |
| Hectar predicted targeting category | no signal peptide or anchor |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622936525.9829347-UTR-E-siliculosus-1a_M_contig96:76342..76438 | 1622936525.9829347-UTR-E-siliculosus-1a_M_contig96:76342..76438 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig96 76343..76438 - |
| 1696251116.903533-UTR-E-siliculosus-1a_M_contig96:76342..76438 | 1696251116.903533-UTR-E-siliculosus-1a_M_contig96:76342..76438 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig96 76343..76438 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622936526.007755-CDS-E-siliculosus-1a_M_contig96:76438..76539 | 1622936526.007755-CDS-E-siliculosus-1a_M_contig96:76438..76539 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig96 76439..76539 - |
| 1696251116.9138925-CDS-E-siliculosus-1a_M_contig96:76438..76539 | 1696251116.9138925-CDS-E-siliculosus-1a_M_contig96:76438..76539 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig96 76439..76539 - |
| 1622936526.024405-CDS-E-siliculosus-1a_M_contig96:77467..77540 | 1622936526.024405-CDS-E-siliculosus-1a_M_contig96:77467..77540 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig96 77468..77540 - |
| 1696251116.9255526-CDS-E-siliculosus-1a_M_contig96:77467..77540 | 1696251116.9255526-CDS-E-siliculosus-1a_M_contig96:77467..77540 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig96 77468..77540 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig96.17553.1 >prot_E-siliculosus-1a_M_contig96.17553.1 ID=prot_E-siliculosus-1a_M_contig96.17553.1|Name=mRNA_E-siliculosus-1a_M_contig96.17553.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=58bp
KAQRCEGLLLVANTGHPQQGVQDSGFGGRRLRARPGSKRREERQTPVKKK
TPAGLCC* back to topmRNA from alignment at E-siliculosus-1a_M_contig96:76343..77540- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_M_contig96.17553.1 ID=mRNA_E-siliculosus-1a_M_contig96.17553.1|Name=mRNA_E-siliculosus-1a_M_contig96.17553.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=1198bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:76343..77540- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
AAGGCGCAGCGCTGTGAAGGATTACTGCTTGTTGCGAACACAGGACATCC
ACAGCAAGGCGTCCAGGATTCCGGTGAGCGACCTCTGTGTCCTGCCCTCG
TTACTTCTGTGACTGGATTTGGCCCGATTTCAACTTCACGCGCCTCTTTC
TTTGATAATTTTGCAAAAAGTTTGGAAGCTGCCCTACGGGTGTGGAAGCC
GTGTGTGCGGTGCTGGTTTGGTCGTGCGCGGGGTAGCTCGTGTGCATCTC
CCGTATGGCTTTTCTCTGCTCCACCTCCGTTGGCTGCAGGGTCCTTTGCT
TGCAAGGTCTGCTGTCTCCGAGGCACCAACGTTCCCCGCAAACAGCTTGC
TCTCGTCCAAAAAAGAAAAGACAGGTCAGGGCGGCACTGCTCGTTGTTAC
ACCAGGCCGACGGAGAACACCAGGCAGCAAACGTAGCCAACAGCCAGGAG
CTCTCACGCCCGTTTTTCGTGCCGCGGCTAGTCACTCCTCTTCATGTGCC
TCTGCCACAAGTGCTGCCCCCCCGTACAGCAAGTGCTCCAAGGCTGAGAT
TGGCTTGTAGTACGATCGCGACGCCTCTGTTTCGCCTTGACCCAAACTTT
ACAGTAGATCTCTTCCTGCGAGGGCGCCGGCAGCAGGCAAAGGCGAGACA
GAAAATGCAGCGCAGAGAAGTGCTACCAAATGGAAAACATTTACTCCAAA
CTTTCTCTGCGGCTGGTGACTGTGTGCGCACCGCAAGAGGCCTTTTGCAC
GTCATCACCGTCGTCGTAGTGCCCGGCCAACCTGTTTGCTGGAGAGGGAC
GCATACAAGGCTGCTGCTGCTACTGCTGCAACACACACGCCGCAGCGCCG
CAGCAGCAGCGGGAATCACGCAAAACACACGCCTTTTTCGTCTGCTGCCG
CTTTTTTGAACTACATCCCAAGAACTATCGCTCGAGGGTTCCGCTGGCTC
ATCCAATTCGTGTGTAATGTGTGTGCTCTGCGGTTTGGTGCGTGGCAGCA
GGTTTCGGCGGGCGAAGACTGAGGGCGCGCCCCGGCAGCAAGAGGCGAGA
GGAGCGGCAGACGCCGGTGAAAAAGAAAACACCGGCGGGGCTGTGTTGTT
AAACGCAAGATACCACCGGAGTGCTATACTAGAGGTCGACACTCAGGAGC
ACGCGCCGGCAGGATTATCATCGCTACTGGCGCGGGGAGCTATTAAAA back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_M_contig96:76343..77540- >mRNA_E-siliculosus-1a_M_contig96.17553.1 ID=mRNA_E-siliculosus-1a_M_contig96.17553.1|Name=mRNA_E-siliculosus-1a_M_contig96.17553.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=348bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:76343..77540- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
AAGGCGCAGCGCTGTGAAGGATTACTGCTTGTTGCGAACACAGGACATCC
ACAGCAAGGCGTCCAGGATTCCGAAGGCGCAGCGCTGTGAAGGATTACTG
CTTGTTGCGAACACAGGACATCCACAGCAAGGCGTCCAGGATTCCGGTTT
CGGCGGGCGAAGACTGAGGGCGCGCCCCGGCAGCAAGAGGCGAGAGGAGC
GGCAGACGCCGGTGAAAAAGAAAACACCGGCGGGGCTGTGTTGTTAAGTT
TCGGCGGGCGAAGACTGAGGGCGCGCCCCGGCAGCAAGAGGCGAGAGGAG
CGGCAGACGCCGGTGAAAAAGAAAACACCGGCGGGGCTGTGTTGTTAA back to top
|