Homology
BLAST of mRNA_E-siliculosus-1a_M_contig96.17549.1 vs. uniprot
Match: D7G3N9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3N9_ECTSI) HSP 1 Score: 55.8 bits (133), Expect = 2.050e-8 Identity = 29/31 (93.55%), Postives = 29/31 (93.55%), Query Frame = -2 Query: 6 MAHGGAASIASIGMIAALGHRRARVQGLRHK 98
MAH GA SIASIGMIAALGHRRARVQGLRHK
Sbjct: 1 MAHSGAGSIASIGMIAALGHRRARVQGLRHK 31
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 0 |
| Stop | 0 |
| Cds size | 321 |
| Model size | 324 |
| Exons | 1 |
| Hectar predicted targeting category | mitochondrion |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622936526.4675794-CDS-E-siliculosus-1a_M_contig96:29431..29752 | 1622936526.4675794-CDS-E-siliculosus-1a_M_contig96:29431..29752 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig96 29432..29752 + |
| 1696251117.0461073-CDS-E-siliculosus-1a_M_contig96:29431..29752 | 1696251117.0461073-CDS-E-siliculosus-1a_M_contig96:29431..29752 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig96 29432..29752 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig96.17549.1 >prot_E-siliculosus-1a_M_contig96.17549.1 ID=prot_E-siliculosus-1a_M_contig96.17549.1|Name=mRNA_E-siliculosus-1a_M_contig96.17549.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=107bp
LTLCRSPCTRARRWPKAAIIPIEAIEAAPPWAITSRASAPLLGGYDHSTN
LLVDQLGKRRQTCLRWAISNACCSTAVSHSSRAQAESSSRATGREPAACF
ARLVVPQ back to topmRNA from alignment at E-siliculosus-1a_M_contig96:29432..29754+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_M_contig96.17549.1 ID=mRNA_E-siliculosus-1a_M_contig96.17549.1|Name=mRNA_E-siliculosus-1a_M_contig96.17549.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=323bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:29432..29754+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CTCACCTTGTGCCGCAGCCCTTGCACCCGGGCGCGCCGGTGGCCCAAAGC
TGCGATCATCCCAATCGAGGCAATCGAGGCTGCTCCGCCGTGGGCCATAA
CATCTCGTGCCTCAGCTCCGCTTCTTGGAGGCTACGATCACAGCACCAAC
TTGCTAGTTGACCAGCTTGGGAAACGTCGTCAGACCTGTTTACGGTGGGC
GATCTCGAACGCGTGCTGCTCGACAGCAGTGTCACACAGCAGCAGAGCAC
AGGCAGAGAGCAGCAGCAGAGCGACGGGGAGGGAGCCCGCCGCTTGCTTC
GCTCGACTCGTAGTACCCCAGCC back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_M_contig96:29432..29754+ >mRNA_E-siliculosus-1a_M_contig96.17549.1 ID=mRNA_E-siliculosus-1a_M_contig96.17549.1|Name=mRNA_E-siliculosus-1a_M_contig96.17549.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=642bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:29432..29754+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CTCACCTTGTGCCGCAGCCCTTGCACCCGGGCGCGCCGGTGGCCCAAAGC
TGCGATCATCCCAATCGAGGCAATCGAGGCTGCTCCGCCGTGGGCCATAA
CATCTCGTGCCTCAGCTCCGCTTCTTGGAGGCTACGATCACAGCACCAAC
TTGCTAGTTGACCAGCTTGGGAAACGTCGTCAGACCTGTTTACGGTGGGC
GATCTCGAACGCGTGCTGCTCGACAGCAGTGTCACACAGCAGCAGAGCAC
AGGCAGAGAGCAGCAGCAGAGCGACGGGGAGGGAGCCCGCCGCTTGCTTC
GCTCGACTCGTAGTACCCCAGCTCACCTTGTGCCGCAGCCCTTGCACCCG
GGCGCGCCGGTGGCCCAAAGCTGCGATCATCCCAATCGAGGCAATCGAGG
CTGCTCCGCCGTGGGCCATAACATCTCGTGCCTCAGCTCCGCTTCTTGGA
GGCTACGATCACAGCACCAACTTGCTAGTTGACCAGCTTGGGAAACGTCG
TCAGACCTGTTTACGGTGGGCGATCTCGAACGCGTGCTGCTCGACAGCAG
TGTCACACAGCAGCAGAGCACAGGCAGAGAGCAGCAGCAGAGCGACGGGG
AGGGAGCCCGCCGCTTGCTTCGCTCGACTCGTAGTACCCCAG back to top
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