mRNA_E-siliculosus-1a_M_contig953.17545.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig953.17545.1 vs. uniprot
Match: D7FTK7_ECTSI (ULP_PROTEASE domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTK7_ECTSI) HSP 1 Score: 49.3 bits (116), Expect = 1.010e-5 Identity = 20/46 (43.48%), Postives = 29/46 (63.04%), Query Frame = 1 Query: 1 FMEERWKNTGRQRMSFDFGVLPLVRPEAPQQANGFDCGVYVIRYCK 138
+++E W + R + D +LPLV E+PQQ NG DCG+ V+R K
Sbjct: 22 YLQEAWSSNDRGEATVDKDLLPLVITESPQQGNGCDCGILVLRNAK 67
BLAST of mRNA_E-siliculosus-1a_M_contig953.17545.1 vs. uniprot
Match: A0A835YUH4_9STRA (ULP_PROTEASE domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUH4_9STRA) HSP 1 Score: 48.1 bits (113), Expect = 4.060e-5 Identity = 21/48 (43.75%), Postives = 30/48 (62.50%), Query Frame = 1 Query: 1 FMEERWKNTGRQRMSFDFGV--LPLVRPEAPQQANGFDCGVYVIRYCK 138
+++ WK + V LPLV+P APQQ+NG DCGVYV++Y +
Sbjct: 77 YVQAEWKAAYPEAPPLTLSVRDLPLVKPRAPQQSNGCDCGVYVLQYAE 124 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig953.17545.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig953.17545.1 >prot_E-siliculosus-1a_M_contig953.17545.1 ID=prot_E-siliculosus-1a_M_contig953.17545.1|Name=mRNA_E-siliculosus-1a_M_contig953.17545.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=55bp MEERWKNTGRQRMSFDFGVLPLVRPEAPQQANGFDCGVYVIRYCKASSTQback to top mRNA from alignment at E-siliculosus-1a_M_contig953:130..297- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig953.17545.1 ID=mRNA_E-siliculosus-1a_M_contig953.17545.1|Name=mRNA_E-siliculosus-1a_M_contig953.17545.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=168bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig953:130..297- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig953:130..297- >mRNA_E-siliculosus-1a_M_contig953.17545.1 ID=mRNA_E-siliculosus-1a_M_contig953.17545.1|Name=mRNA_E-siliculosus-1a_M_contig953.17545.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=330bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig953:130..297- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |