Homology
BLAST of mRNA_E-siliculosus-1a_M_contig95.17538.1 vs. uniprot
Match: D7G1Y1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1Y1_ECTSI) HSP 1 Score: 270 bits (689), Expect = 1.020e-85 Identity = 147/161 (91.30%), Postives = 149/161 (92.55%), Query Frame = 1 Query: 1 MASPPQQQVQRMDRGSFVSSESFESLTCGAPAVVIERLRQATGADAGPDALKELGESIKKAAVEKLGVGGDKRVVEVAFGGAMGRSFYATADGSTTTADVVLFYTLDPLDIDTKQSTCVRKARTGCELSADEVMQALYKLQPCGGGDSXXXXXXXATTSTS 483
MASPPQQQVQRMDRGSFVSSESFESLTCGAPAVVIERLRQATGADAGP+ALKELGESIKKAAVEKLG GGDK VEVAFGGAMGRSFYATADGSTTTADVVLFYTLDPLDIDTKQSTCVRKART CELSADEVMQALYKLQP GGGD+ ATTSTS
Sbjct: 1 MASPPQQQVQRMDRGSFVSSESFESLTCGAPAVVIERLRQATGADAGPNALKELGESIKKAAVEKLGGGGDKGGVEVAFGGAMGRSFYATADGSTTTADVVLFYTLDPLDIDTKQSTCVRKARTECELSADEVMQALYKLQP-GGGDTSDSGSGGATTSTS 160
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 486 |
| Model size | 1481 |
| Exons | 2 |
| Ec32 ortholog | Ec-07_003710.1 |
| Ec32 ortholog description | hypothetical protein |
| Hectar predicted targeting category | other localisation |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622936524.469275-UTR-E-siliculosus-1a_M_contig95:627475..628470 | 1622936524.469275-UTR-E-siliculosus-1a_M_contig95:627475..628470 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig95 627476..628470 - |
| 1696251116.3944216-UTR-E-siliculosus-1a_M_contig95:627475..628470 | 1696251116.3944216-UTR-E-siliculosus-1a_M_contig95:627475..628470 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig95 627476..628470 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622936524.484666-CDS-E-siliculosus-1a_M_contig95:628470..628638 | 1622936524.484666-CDS-E-siliculosus-1a_M_contig95:628470..628638 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig95 628471..628638 - |
| 1696251116.4041302-CDS-E-siliculosus-1a_M_contig95:628470..628638 | 1696251116.4041302-CDS-E-siliculosus-1a_M_contig95:628470..628638 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig95 628471..628638 - |
| 1622936524.5014646-CDS-E-siliculosus-1a_M_contig95:628899..629217 | 1622936524.5014646-CDS-E-siliculosus-1a_M_contig95:628899..629217 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig95 628900..629217 - |
| 1696251116.4255452-CDS-E-siliculosus-1a_M_contig95:628899..629217 | 1696251116.4255452-CDS-E-siliculosus-1a_M_contig95:628899..629217 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig95 628900..629217 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig95.17538.1 >prot_E-siliculosus-1a_M_contig95.17538.1 ID=prot_E-siliculosus-1a_M_contig95.17538.1|Name=mRNA_E-siliculosus-1a_M_contig95.17538.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=162bp
MASPPQQQVQRMDRGSFVSSESFESLTCGAPAVVIERLRQATGADAGPDA
LKELGESIKKAAVEKLGVGGDKRVVEVAFGGAMGRSFYATADGSTTTADV
VLFYTLDPLDIDTKQSTCVRKARTGCELSADEVMQALYKLQPCGGGDSSS
SGSGGATTSTS* back to topmRNA from alignment at E-siliculosus-1a_M_contig95:627476..629217- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_M_contig95.17538.1 ID=mRNA_E-siliculosus-1a_M_contig95.17538.1|Name=mRNA_E-siliculosus-1a_M_contig95.17538.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=1742bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:627476..629217- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGCTTCGCCCCCGCAGCAGCAGGTGCAGAGGATGGACCGTGGGAGCTT
CGTCTCTTCAGAGAGCTTCGAAAGTCTGACCTGCGGCGCCCCCGCTGTCG
TTATCGAGCGACTCCGCCAAGCCACCGGTGCTGACGCCGGCCCGGACGCG
CTAAAAGAGCTCGGTGAGAGCATCAAGAAGGCGGCGGTGGAAAAGTTGGG
GGTGGGTGGGGACAAGCGGGTGGTGGAGGTGGCTTTTGGGGGGGCGATGG
GCCGGTCATTCTACGCCACGGCTGACGGGTCGACAACAACCGCGGACGTT
GTCCTGTTCTACACACTGGTGGGTTGAGGGTAGTTGTGGAGAGGCTTATT
GCGCACCCACCCCGATGCAGACATCGTCGTTATCCACCCCCCGATATCCC
CATAGGACATTGAGTTTGAATATACAGCAACATAGTGTTAGCTTTTTGGG
GCATATCTACAACCACTCGAGTACATACAGTAAATCTTTGCGGGCATAAC
GCCTCCAAATGCGTCGATAACGACAACAACACTGAACCACATCACAACGG
TTCCTGCGTCGAATCGTTTCTTTCTTTAGGACCCATTGGACATCGACACA
AAACAGAGCACATGCGTTCGGAAGGCCAGAACAGGGTGCGAACTCTCGGC
TGACGAGGTTATGCAGGCACTCTACAAGCTTCAGCCTTGCGGCGGCGGTG
ACAGCAGCAGCAGCGGCAGCGGCGGTGCCACCACGTCGACTTCTTAGGGA
TGGCAAAGGCCAGACATAAACGGTCAGGGACGTGAGGGTCACCGCCTTTC
CAGAGCTACGGTATACACATAGCTGTCACTGCTCCAACCGCGCCGTTTGC
GGTGTCTATTTTTCTTTTTCTTGCTTGTTTTGGCGCGCGGGGGGGGGAGG
GGATGCCGCAGGATAAATGTTGTGCCGCATTTGAAATCGGGTCGGCGATG
TCTCCAATAATATTTGTTTATTTATTTCCTAATAATAGATAGTCAGACTA
TCTATGTAAACATGGATGTGTTGGGAAGCCTGAAGTGAATGGTAATGGTC
GTTCGTTGTACACAGTCAATAATGATGCAATAATGATGCAGTAGCTCTGC
AAAGTCCCTGACAAATTTCTTTTTAGAGGTTGCACTTCAATCAATGTGTG
GGGATGTGTGCATGGTTGTTTTTCGTTGTTTGCCGTCGATCGAAGAAGAA
CTAATCAATTGCCGTGTGTAAATAGCCGCAATGTTGTTTGTCGCAACAGA
AACCGAAACTTCCGTCCAAAGGTGGTCAATGGAGTCAATGGGGCTCTAGA
GTTGGTTTCGTTGCGTTTGTCGTCGCGGTTTCGACAAGCCTCCCTTGCTT
TGGATGTACGTTGTGATCTTGTCCGTCGATGATAGATAGTATTAATGCAG
TAAATAAATGTAGATGGTATTCTCCCGAGTGGCAGCCGTTTGCCACCTGC
TCTTTGGTTTTTGGATTTCTTAGTCTAGGCGTTGGACATAGATTTGCAGC
CAGAGCGGACGTTAAAAGTACACCAACCAATCGATCCTTGCACTCTGTGC
ATTTGTTATTTTTTTGCGTCGTCCAACAGCAAAGAAATCCACGTTGAAGT
AGATAGTTCACCCGGCGGACTTTGGTCCGTCGCCACGCGTCGTTTGGTGA
TTGAATTGAGTGAATCAACGCCGCCGCTTGCAGGGAGTTCGTTGGGTCTG
CATCATCTCGAGGTTTCTTGCGATTTAACGCTAAGAAGACGG back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_M_contig95:627476..629217- >mRNA_E-siliculosus-1a_M_contig95.17538.1 ID=mRNA_E-siliculosus-1a_M_contig95.17538.1|Name=mRNA_E-siliculosus-1a_M_contig95.17538.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=972bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:627476..629217- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGCTTCGCCCCCGCAGCAGCAGGTGCAGAGGATGGACCGTGGGAGCTT
CGTCTCTTCAGAGAGCTTCGAAAGTCTGACCTGCGGCGCCCCCGCTGTCG
TTATCGAGCGACTCCGCCAAGCCACCGGTGCTGACGCCGGCCCGGACGCG
CTAAAAGAGCTCGGTGAGAGCATCAAGAAGGCGGCGGTGGAAAAGTTGGG
GGTGGGTGGGGACAAGCGGGTGGTGGAGGTGGCTTTTGGGGGGGCGATGG
GCCGGTCATTCTACGCCACGGCTGACGGGTCGACAACAACCGCGGACGTT
GTCCTGTTCTACACACTGATGGCTTCGCCCCCGCAGCAGCAGGTGCAGAG
GATGGACCGTGGGAGCTTCGTCTCTTCAGAGAGCTTCGAAAGTCTGACCT
GCGGCGCCCCCGCTGTCGTTATCGAGCGACTCCGCCAAGCCACCGGTGCT
GACGCCGGCCCGGACGCGCTAAAAGAGCTCGGTGAGAGCATCAAGAAGGC
GGCGGTGGAAAAGTTGGGGGTGGGTGGGGACAAGCGGGTGGTGGAGGTGG
CTTTTGGGGGGGCGATGGGCCGGTCATTCTACGCCACGGCTGACGGGTCG
ACAACAACCGCGGACGTTGTCCTGTTCTACACACTGGACCCATTGGACAT
CGACACAAAACAGAGCACATGCGTTCGGAAGGCCAGAACAGGGTGCGAAC
TCTCGGCTGACGAGGTTATGCAGGCACTCTACAAGCTTCAGCCTTGCGGC
GGCGGTGACAGCAGCAGCAGCGGCAGCGGCGGTGCCACCACGTCGACTTC
TTAGGACCCATTGGACATCGACACAAAACAGAGCACATGCGTTCGGAAGG
CCAGAACAGGGTGCGAACTCTCGGCTGACGAGGTTATGCAGGCACTCTAC
AAGCTTCAGCCTTGCGGCGGCGGTGACAGCAGCAGCAGCGGCAGCGGCGG
TGCCACCACGTCGACTTCTTAG back to top
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