Homology
BLAST of mRNA_E-siliculosus-1a_M_contig95.17535.1 vs. uniprot
Match:
A0A6H5KWT8_9PHAE (Ribosomal_S7 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KWT8_9PHAE)
HSP 1 Score: 452 bits (1162), Expect = 3.700e-157
Identity = 229/233 (98.28%), Postives = 232/233 (99.57%), Query Frame = 3
Query: 24 MATELNPDGWDGGEPVVADDAGAADGWGEAEVDAPLAVEESGISDVQLFNKWTFDDIEIRDISLEDYIAVKGKYATYLPHTAGRYQKKRFRKATCPIVERLCCALMRKGRNSGKKLMAARIVKHTLEIIHLLTDQNPVQVLVDAVINSGPREDSTRVGSAGVVRRQAVDLSPFRRVNQALYLITTGARESSFRNIKTIAECLADEIINAARGSSNSYAIKKKDEIERVAKANR 722
MATELNPDGWDGGEPVVADDAGAA+GWGE EV+APLAVEESGISDVQLFNKW+FDDIEIRDISLEDYIAVKGKYATYLPHTAGRYQKKRFRKATCPIVERLCCALMRKGRNSGKKLMAARIVKHTLEIIHLLTDQNPVQVLVDAVINSGPREDSTRVGSAGVVRRQAVDLSPFRRVNQALYLITTGARESSFRNIKTIAECLADEIINAARGSSNSYAIKKKDEIERVAKANR
Sbjct: 1 MATELNPDGWDGGEPVVADDAGAAEGWGEPEVEAPLAVEESGISDVQLFNKWSFDDIEIRDISLEDYIAVKGKYATYLPHTAGRYQKKRFRKATCPIVERLCCALMRKGRNSGKKLMAARIVKHTLEIIHLLTDQNPVQVLVDAVINSGPREDSTRVGSAGVVRRQAVDLSPFRRVNQALYLITTGARESSFRNIKTIAECLADEIINAARGSSNSYAIKKKDEIERVAKANR 233
BLAST of mRNA_E-siliculosus-1a_M_contig95.17535.1 vs. uniprot
Match:
B8CC69_THAPS (RS5, ribosomal protein 5 n=10 Tax=Ochrophyta TaxID=2696291 RepID=B8CC69_THAPS)
HSP 1 Score: 332 bits (852), Expect = 2.420e-110
Identity = 162/192 (84.38%), Postives = 181/192 (94.27%), Query Frame = 3
Query: 147 GISDVQLFNKWTFDDIEIRDISLEDYIAVKGKYATYLPHTAGRYQKKRFRKATCPIVERLCCALMRKGRNSGKKLMAARIVKHTLEIIHLLTDQNPVQVLVDAVINSGPREDSTRVGSAGVVRRQAVDLSPFRRVNQALYLITTGARESSFRNIKTIAECLADEIINAARGSSNSYAIKKKDEIERVAKANR 722
G ++V+LF KW+FDDIEIRDISL DYIA KG +ATYLPHTAGRYQKKRFRKA+CPIVERL C LMRKGRNSGKKLMA RIV+HTLEIIHLLTDQNPVQV+VDA+INSGPREDSTRVG AGVVRRQAVD+SPFRRVN ALYL+ TGARE+SFRN+KT+AECLA+E++NAARGSSNSYAIKKKDEIERV+K+NR
Sbjct: 27 GATEVKLFGKWSFDDIEIRDISLVDYIACKGDHATYLPHTAGRYQKKRFRKASCPIVERLACCLMRKGRNSGKKLMAVRIVQHTLEIIHLLTDQNPVQVVVDAIINSGPREDSTRVGGAGVVRRQAVDMSPFRRVNYALYLLATGAREASFRNLKTVAECLAEELVNAARGSSNSYAIKKKDEIERVSKSNR 218
BLAST of mRNA_E-siliculosus-1a_M_contig95.17535.1 vs. uniprot
Match:
A0A7S3V821_9STRA (Hypothetical protein n=3 Tax=Bacillariophyta TaxID=2836 RepID=A0A7S3V821_9STRA)
HSP 1 Score: 329 bits (844), Expect = 4.700e-109
Identity = 159/199 (79.90%), Postives = 185/199 (92.96%), Query Frame = 3
Query: 126 PLAVEESGISDVQLFNKWTFDDIEIRDISLEDYIAVKGKYATYLPHTAGRYQKKRFRKATCPIVERLCCALMRKGRNSGKKLMAARIVKHTLEIIHLLTDQNPVQVLVDAVINSGPREDSTRVGSAGVVRRQAVDLSPFRRVNQALYLITTGARESSFRNIKTIAECLADEIINAARGSSNSYAIKKKDEIERVAKANR 722
P V ++G ++++LF KW+FD+IE+RDISLEDYIA KG +ATYLPHTAGRYQ KRFRKA+CPIVERL C LM+KGRNSGKK+MA RIV+HTLEIIH+LTDQNP+Q++VDAVINSGPREDSTRVG AGVVRRQAVD+SPFRRVN ALYLI TGARE+SFRN+KT+AECLA+E+INAARGSSNSYAIKKKDEIERV+K+NR
Sbjct: 25 PEFVGDAGGAEIKLFGKWSFDEIEVRDISLEDYIACKGDHATYLPHTAGRYQMKRFRKASCPIVERLACCLMKKGRNSGKKIMATRIVQHTLEIIHILTDQNPIQIVVDAVINSGPREDSTRVGGAGVVRRQAVDMSPFRRVNYALYLIATGAREASFRNLKTMAECLAEELINAARGSSNSYAIKKKDEIERVSKSNR 223
BLAST of mRNA_E-siliculosus-1a_M_contig95.17535.1 vs. uniprot
Match:
F0XZC6_AURAN (Ribosomal_S7 domain-containing protein n=2 Tax=Pelagomonadales TaxID=54409 RepID=F0XZC6_AURAN)
HSP 1 Score: 326 bits (835), Expect = 4.070e-108
Identity = 158/190 (83.16%), Postives = 177/190 (93.16%), Query Frame = 3
Query: 153 SDVQLFNKWTFDDIEIRDISLEDYIAVKGKYATYLPHTAGRYQKKRFRKATCPIVERLCCALMRKGRNSGKKLMAARIVKHTLEIIHLLTDQNPVQVLVDAVINSGPREDSTRVGSAGVVRRQAVDLSPFRRVNQALYLITTGARESSFRNIKTIAECLADEIINAARGSSNSYAIKKKDEIERVAKANR 722
S+++LF KWT+DD+E+ DISLEDYIAVKGK++ YLPHTAGRYQKKRFRKA CPI ERL CALMRKGRN+GKKL A RIV+ TLEI+HLLTDQNPVQVLV A++ SGPREDSTRVGSAGVVRRQAVD+SPFRRVN ALYL+ TGARE++FRN+KTIAECLADE+INAARGSSNSYAIKKKDEIERVAKANR
Sbjct: 6 SEIKLFGKWTYDDVEVNDISLEDYIAVKGKHSVYLPHTAGRYQKKRFRKALCPITERLVCALMRKGRNNGKKLKAVRIVQSTLEIVHLLTDQNPVQVLVQAILQSGPREDSTRVGSAGVVRRQAVDMSPFRRVNMALYLLCTGAREAAFRNVKTIAECLADEVINAARGSSNSYAIKKKDEIERVAKANR 195
BLAST of mRNA_E-siliculosus-1a_M_contig95.17535.1 vs. uniprot
Match:
W7TXQ4_9STRA (Ribosomal protein S7, conserved site n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TXQ4_9STRA)
HSP 1 Score: 326 bits (836), Expect = 5.780e-108
Identity = 164/201 (81.59%), Postives = 184/201 (91.54%), Query Frame = 3
Query: 120 DAPLAVEESGISDVQLFNKWTFDDIEIRDISLEDYIAVKGKYATYLPHTAGRYQKKRFRKATCPIVERLCCALMRKGRNSGKKLMAARIVKHTLEIIHLLTDQNPVQVLVDAVINSGPREDSTRVGSAGVVRRQAVDLSPFRRVNQALYLITTGARESSFRNIKTIAECLADEIINAARGSSNSYAIKKKDEIERVAKANR 722
D +A E++ +D++LF KW+ D+EI+D+SLEDYI V GK ATYLPHTAGRYQKKRFRKA CP+VERL +LMRKGRNSGKKL A RIVKHTLEIIHLLTDQNPVQV+VD++IN+GPREDSTRVGSAGVVRRQAVD+SPFRRVNQA+YLITTGARESSFRNIKTIAE LADEIINAA+GSSNSYAIKKKDE+ERVAKANR
Sbjct: 16 DMAVAFEDNS-ADIKLFGKWSLSDVEIKDLSLEDYIGVNGKCATYLPHTAGRYQKKRFRKAQCPVVERLANSLMRKGRNSGKKLTANRIVKHTLEIIHLLTDQNPVQVVVDSIINAGPREDSTRVGSAGVVRRQAVDMSPFRRVNQAIYLITTGARESSFRNIKTIAETLADEIINAAKGSSNSYAIKKKDEVERVAKANR 215
BLAST of mRNA_E-siliculosus-1a_M_contig95.17535.1 vs. uniprot
Match:
D8TJL0_VOLCA (Component of cytosolic 80S ribosome and 40S small subunit n=2 Tax=Viridiplantae TaxID=33090 RepID=D8TJL0_VOLCA)
HSP 1 Score: 325 bits (833), Expect = 7.620e-108
Identity = 157/189 (83.07%), Postives = 178/189 (94.18%), Query Frame = 3
Query: 156 DVQLFNKWTFDDIEIRDISLEDYIAVKGKYATYLPHTAGRYQKKRFRKATCPIVERLCCALMRKGRNSGKKLMAARIVKHTLEIIHLLTDQNPVQVLVDAVINSGPREDSTRVGSAGVVRRQAVDLSPFRRVNQALYLITTGARESSFRNIKTIAECLADEIINAARGSSNSYAIKKKDEIERVAKANR 722
DV+LF KW+F+DIE++DISLEDYIAVK KYA Y+PHTAGRYQKKRFRKA CPIVERLC +LM GRN+GKKLMA RIVKH +IIHLLTDQNP+QVLVDA+INSGPRED+TR+GSAGVVRRQAVD+SP RRVNQA+YL+TTGARE++FRNIKTIAECLADE++NAA+GSSNSYAIKKKDEIERVAKANR
Sbjct: 5 DVKLFGKWSFEDIEVQDISLEDYIAVKTKYAVYVPHTAGRYQKKRFRKALCPIVERLCNSLMMHGRNNGKKLMAVRIVKHAFDIIHLLTDQNPIQVLVDAIINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELVNAAKGSSNSYAIKKKDEIERVAKANR 193
BLAST of mRNA_E-siliculosus-1a_M_contig95.17535.1 vs. uniprot
Match:
A0A835ZGP4_9STRA (Ribosomal protein S7 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGP4_9STRA)
HSP 1 Score: 325 bits (832), Expect = 1.080e-107
Identity = 159/190 (83.68%), Postives = 181/190 (95.26%), Query Frame = 3
Query: 153 SDVQLFNKWTFDDIEIRDISLEDYIAVKGKYATYLPHTAGRYQKKRFRKATCPIVERLCCALMRKGRNSGKKLMAARIVKHTLEIIHLLTDQNPVQVLVDAVINSGPREDSTRVGSAGVVRRQAVDLSPFRRVNQALYLITTGARESSFRNIKTIAECLADEIINAARGSSNSYAIKKKDEIERVAKANR 722
S+++LFNKW++DDIEI DISL DY+AV K+AT+LPHTAGRYQKKRFRKA CP++ERL +LMRKGRNSGKKL+AAR+V+ T+EIIHLLTD+NP+Q LV+AVIN+GPREDSTRVGSAGVVRRQAVDLSPFRRVNQA+YL+TTGARESSFRNIKTIAECLADEIINA+RGSSNSYAIKKKDEIERVAKANR
Sbjct: 4 SEIKLFNKWSYDDIEIEDISLSDYLAVGTKHATFLPHTAGRYQKKRFRKAACPLIERLTVSLMRKGRNSGKKLLAARVVRSTMEIIHLLTDENPLQTLVNAVINAGPREDSTRVGSAGVVRRQAVDLSPFRRVNQAIYLLTTGARESSFRNIKTIAECLADEIINASRGSSNSYAIKKKDEIERVAKANR 193
BLAST of mRNA_E-siliculosus-1a_M_contig95.17535.1 vs. uniprot
Match:
A0A6V2ER46_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2ER46_9STRA)
HSP 1 Score: 326 bits (836), Expect = 1.080e-107
Identity = 158/189 (83.60%), Postives = 179/189 (94.71%), Query Frame = 3
Query: 156 DVQLFNKWTFDDIEIRDISLEDYIAVKGKYATYLPHTAGRYQKKRFRKATCPIVERLCCALMRKGRNSGKKLMAARIVKHTLEIIHLLTDQNPVQVLVDAVINSGPREDSTRVGSAGVVRRQAVDLSPFRRVNQALYLITTGARESSFRNIKTIAECLADEIINAARGSSNSYAIKKKDEIERVAKANR 722
+V+LF KW+FD+IE+RDISL DYIA KG +ATYLPHTAGRYQKKRFRKA+CPIVERL C LMRKGRN+GKKLMA RIV+HTLEIIHLLTDQNP+QV+VDA+INSGPREDSTRVG AGVVRRQAVD+SPFRRVN ALYL+ TGARE+SFRN+KT+AECLA+E+INAARGSSNSYAIKKKDEIERV+K+NR
Sbjct: 45 EVKLFGKWSFDEIEVRDISLVDYIACKGDHATYLPHTAGRYQKKRFRKASCPIVERLACCLMRKGRNAGKKLMAVRIVQHTLEIIHLLTDQNPIQVVVDAIINSGPREDSTRVGGAGVVRRQAVDMSPFRRVNYALYLLATGAREASFRNLKTMAECLAEELINAARGSSNSYAIKKKDEIERVSKSNR 233
BLAST of mRNA_E-siliculosus-1a_M_contig95.17535.1 vs. uniprot
Match:
A0A7S4N0H9_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N0H9_9STRA)
HSP 1 Score: 326 bits (835), Expect = 1.430e-107
Identity = 158/192 (82.29%), Postives = 179/192 (93.23%), Query Frame = 3
Query: 147 GISDVQLFNKWTFDDIEIRDISLEDYIAVKGKYATYLPHTAGRYQKKRFRKATCPIVERLCCALMRKGRNSGKKLMAARIVKHTLEIIHLLTDQNPVQVLVDAVINSGPREDSTRVGSAGVVRRQAVDLSPFRRVNQALYLITTGARESSFRNIKTIAECLADEIINAARGSSNSYAIKKKDEIERVAKANR 722
G ++V+LF KW+FDD+E+RDISL DYIA G +A +LPHTAGRYQKKRFRKA+CPIVERL C LM+KGRNSGKKLMA RIV+HTLEIIHLLTDQNP+QV+VDA+INSGPREDSTRVG AGVVRRQAVD+SPFRRVN ALYLI TGARE+SFRN+KT+AECLA+E+INAARGSSNSYAIKKKDEIERVAK+NR
Sbjct: 40 GATEVKLFGKWSFDDVEVRDISLVDYIACTGDHAVFLPHTAGRYQKKRFRKASCPIVERLACCLMKKGRNSGKKLMACRIVQHTLEIIHLLTDQNPIQVVVDAIINSGPREDSTRVGGAGVVRRQAVDMSPFRRVNYALYLIATGAREASFRNLKTMAECLAEELINAARGSSNSYAIKKKDEIERVAKSNR 231
BLAST of mRNA_E-siliculosus-1a_M_contig95.17535.1 vs. uniprot
Match:
A0A7S1CV61_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CV61_CYCTE)
HSP 1 Score: 326 bits (836), Expect = 3.500e-107
Identity = 161/212 (75.94%), Postives = 188/212 (88.68%), Query Frame = 3
Query: 108 EAEVDAPLAVEES-------GISDVQLFNKWTFDDIEIRDISLEDYIAVKGKYATYLPHTAGRYQKKRFRKATCPIVERLCCALMRKGRNSGKKLMAARIVKHTLEIIHLLTDQNPVQVLVDAVINSGPREDSTRVGSAGVVRRQAVDLSPFRRVNQALYLITTGARESSFRNIKTIAECLADEIINAARGSSNSYAIKKKDEIERVAKANR 722
E EV+ + EE G ++++LF KW+FDDIEIRDISL DYIA KG +ATYLPHTAGRYQKKRFRKA+CPI+ERL C LM+KGRNSGKKLMA R+++HTLEIIHLLTDQNP+QV+VDA+INSGPREDSTRVG AGVVRRQAVD+SPFRRVN ALYL+ TGARE+SFRN+KT+AECLA+E++NAARGSSNSYAIKKKDEIERV+K+NR
Sbjct: 56 EGEVEEGVDFEEEDEFVAVGGAAEIKLFGKWSFDDIEIRDISLVDYIACKGDHATYLPHTAGRYQKKRFRKASCPILERLACCLMKKGRNSGKKLMACRLLQHTLEIIHLLTDQNPMQVVVDAIINSGPREDSTRVGGAGVVRRQAVDMSPFRRVNYALYLLATGAREASFRNLKTMAECLAEELVNAARGSSNSYAIKKKDEIERVSKSNR 267
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig95.17535.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90 )
Total hits: 25
0 1 Expect = 3.70e-157 / Id = 98.28 Expect = 2.42e-110 / Id = 84.38 Expect = 4.70e-109 / Id = 79.90 Expect = 4.07e-108 / Id = 83.16 Expect = 5.78e-108 / Id = 81.59 Expect = 7.62e-108 / Id = 83.07 Expect = 1.08e-107 / Id = 83.68 Expect = 1.08e-107 / Id = 83.60 Expect = 1.43e-107 / Id = 82.29 Expect = 3.50e-107 / Id = 75.94 Sequence A0A6H5KWT8_9PHAE B8CC69_THAPS A0A7S3V821_9STRA F0XZC6_AURAN W7TXQ4_9STRA D8TJL0_VOLCA A0A835ZGP4_9STRA A0A6V2ER46_9STRA A0A7S4N0H9_9STRA A0A7S1CV61_CYCTE Pages
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Start 1 Stop 1 Cds size 702 Model size 1286 Exons 5 Ec32 ortholog Ec-07_003740.1 Ec32 ortholog description Ribosomal protein S5/S7, eukaryotic/archaeal Hectar predicted targeting category other localisation BRITE br01610,ko00000,ko00001,ko00002,ko01000,ko03011,ko03029 Best eggNOG OG NA|NA|NA Best tax level Eukaryota COG Functional cat. J EC 1.18.1.6 EggNOG OGs COG0049@1,KOG3291@2759 EggNOG free text desc. rRNA binding GOs GO:0000028,GO:0000184,GO:0000956,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0005911,GO:0006139,GO:0006401,GO:0006402,GO:0006403,GO:0006405,GO:0006407,GO:0006412,GO:0006413,GO:0006450,GO:0006518,GO:0006605,GO:0006611,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009506,GO:0009507,GO:0009536,GO:0009719,GO:0009725,GO:0009735,GO:0009892,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0015031,GO:0015833,GO:0015931,GO:0015935,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0019222,GO:0019439,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030054,GO:0030312,GO:0030684,GO:0030686,GO:0031090,GO:0031503,GO:0031974,GO:0031981,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034655,GO:0042221,GO:0042254,GO:0042255,GO:0042274,GO:0042788,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0048519,GO:0050657,GO:0050658,GO:0050789,GO:0050896,GO:0051029,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0055044,GO:0060255,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070727,GO:0070925,GO:0070972,GO:0071166,GO:0071426,GO:0071428,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0097064,GO:0097159,GO:0098588,GO:0098805,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990904 KEGG Module M00177 KEGG Pathway ko03010,map03010 KEGG ko ko:K02989,ko:K18914 Preferred name RPS5 Seed eggNOG ortholog 2880.D7G1X8 Seed ortholog evalue 2.3e-125 Seed ortholog score 454.9 Taxonomic scope Eukaryota
Relationships
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622936523.943057-UTR-E-siliculosus-1a_M_contig95:604820..605381 1622936523.943057-UTR-E-siliculosus-1a_M_contig95:604820..605381 Ectocarpus siliculosus Ec864m_EcPH12_78m male UTR E-siliculosus-1a_M_contig95 604821..605381 - 1696251116.144408-UTR-E-siliculosus-1a_M_contig95:604820..605381 1696251116.144408-UTR-E-siliculosus-1a_M_contig95:604820..605381 Ectocarpus siliculosus Ec864m_EcPH12_78m male UTR E-siliculosus-1a_M_contig95 604821..605381 - 1622936524.0667133-UTR-E-siliculosus-1a_M_contig95:610335..610358 1622936524.0667133-UTR-E-siliculosus-1a_M_contig95:610335..610358 Ectocarpus siliculosus Ec864m_EcPH12_78m male UTR E-siliculosus-1a_M_contig95 610336..610358 - 1696251116.2206683-UTR-E-siliculosus-1a_M_contig95:610335..610358 1696251116.2206683-UTR-E-siliculosus-1a_M_contig95:610335..610358 Ectocarpus siliculosus Ec864m_EcPH12_78m male UTR E-siliculosus-1a_M_contig95 610336..610358 -
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622936523.9629905-CDS-E-siliculosus-1a_M_contig95:605381..605549 1622936523.9629905-CDS-E-siliculosus-1a_M_contig95:605381..605549 Ectocarpus siliculosus Ec864m_EcPH12_78m male CDS E-siliculosus-1a_M_contig95 605382..605549 - 1696251116.1603012-CDS-E-siliculosus-1a_M_contig95:605381..605549 1696251116.1603012-CDS-E-siliculosus-1a_M_contig95:605381..605549 Ectocarpus siliculosus Ec864m_EcPH12_78m male CDS E-siliculosus-1a_M_contig95 605382..605549 - 1622936523.9775739-CDS-E-siliculosus-1a_M_contig95:606053..606170 1622936523.9775739-CDS-E-siliculosus-1a_M_contig95:606053..606170 Ectocarpus siliculosus Ec864m_EcPH12_78m male CDS E-siliculosus-1a_M_contig95 606054..606170 - 1696251116.1763382-CDS-E-siliculosus-1a_M_contig95:606053..606170 1696251116.1763382-CDS-E-siliculosus-1a_M_contig95:606053..606170 Ectocarpus siliculosus Ec864m_EcPH12_78m male CDS E-siliculosus-1a_M_contig95 606054..606170 - 1622936523.9986517-CDS-E-siliculosus-1a_M_contig95:607529..607664 1622936523.9986517-CDS-E-siliculosus-1a_M_contig95:607529..607664 Ectocarpus siliculosus Ec864m_EcPH12_78m male CDS E-siliculosus-1a_M_contig95 607530..607664 - 1696251116.1869416-CDS-E-siliculosus-1a_M_contig95:607529..607664 1696251116.1869416-CDS-E-siliculosus-1a_M_contig95:607529..607664 Ectocarpus siliculosus Ec864m_EcPH12_78m male CDS E-siliculosus-1a_M_contig95 607530..607664 - 1622936524.0162697-CDS-E-siliculosus-1a_M_contig95:608567..608694 1622936524.0162697-CDS-E-siliculosus-1a_M_contig95:608567..608694 Ectocarpus siliculosus Ec864m_EcPH12_78m male CDS E-siliculosus-1a_M_contig95 608568..608694 - 1696251116.1971219-CDS-E-siliculosus-1a_M_contig95:608567..608694 1696251116.1971219-CDS-E-siliculosus-1a_M_contig95:608567..608694 Ectocarpus siliculosus Ec864m_EcPH12_78m male CDS E-siliculosus-1a_M_contig95 608568..608694 - 1622936524.044691-CDS-E-siliculosus-1a_M_contig95:610180..610335 1622936524.044691-CDS-E-siliculosus-1a_M_contig95:610180..610335 Ectocarpus siliculosus Ec864m_EcPH12_78m male CDS E-siliculosus-1a_M_contig95 610181..610335 - 1696251116.2073033-CDS-E-siliculosus-1a_M_contig95:610180..610335 1696251116.2073033-CDS-E-siliculosus-1a_M_contig95:610180..610335 Ectocarpus siliculosus Ec864m_EcPH12_78m male CDS E-siliculosus-1a_M_contig95 610181..610335 -
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig95.17535.1
>prot_E-siliculosus-1a_M_contig95.17535.1 ID=prot_E-siliculosus-1a_M_contig95.17535.1|Name=mRNA_E-siliculosus-1a_M_contig95.17535.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=234bp
MATELNPDGWDGGEPVVADDAGAADGWGEAEVDAPLAVEESGISDVQLFN back to top mRNA from alignment at E-siliculosus-1a_M_contig95:604821..610358-
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig95.17535.1 ID=mRNA_E-siliculosus-1a_M_contig95.17535.1|Name=mRNA_E-siliculosus-1a_M_contig95.17535.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=5538bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:604821..610358- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)CTTCCCCGTACGCCGGAACAAAC ATGGCCACCGAACTGAACCCCGACGGA
TGGGATGGAGGAGAGCCCGTGGTGGCTGACGACGCCGGTGCCGCCGACGG
GTGGGGCGAGGCGGAGGTGGACGCGCCGTTGGCCGTCGAGGAGTCCGGCA
TCTCGGATGTGCAGCTCTTCAATAAGTG GTGAGAGTGTAGCGCAGGATTT
CGACGTGAGAGCCAAGGGGCTGCTGCTCCCAGACCCGGGTGTTGCTGTTT
GCTGGCTGCATCGGCATCGTTCTACGCATAGCGTTTGCAAGGACGTTGCT
GTTGTCTGCTTTGGCCTTTGTTAGGTTGGGATTTATCCACGCCTGCTTCT
TCGTTGCCGTCAAAGTCACACACAACCTCTCGCAGAGGCTTTGCGGACGG
CGGCGGTGCGGCCGTGGGGGCCAGAGGTGATACATTGGCATGATGTCGGT
TATGCTACATACACCATAGGGGAATCGTGGTTTCCTGGCTGGGATCACGA
GATACTCGTTGCAACTCCCTGGCTAGTTGGTCTTGTGATGAGTTTTCTCC
CTACAACTTGTCCTCTCCGGTTGTTTCTCCCACAATGAAAACCAGCGAGT
TTTTGGGTGGGGAAGCAAATCACCGCTCCCTTTGCATGGACGACACTGCT
TGCCTTCCACGGCTCACGGCTGCTGCGTCGTTGTTGTCTACTGCAGGGTT
CGCAATCGTTAGCAACGGCACACCCTATGTCCGGTTCAGCCTTGCCTTTG
GTCAGATTTTTTGCATGTGTGAAAATGGACGTAGTATCTCTCGCTTCACT
CCAAAACCCCCTTGTCCTCCAATATCGGAGATTTGGATGCCGCTCATCGC
GCACGGATTGGTCGAAGGAGATCGCGTCTCTCGTCAACTCGATGGTTGCT
TCTCATCAATCCGCTCGATTCGCGTTGCACGTCATGGAGCAGCCGAAACC
CCTCCTGCACACCCGTTCCACTTCTACAGTTCTGTTCCAGAAACGTCAAC
CAACCCCAAACTGACCCAAATAGCGCGACTCGTAGAACCTCTACCAATAT
ATAGCGCCTGATACTGCTCTATGTTTATTGTGTTTGGCACACATCACCTC
CGGTCCAAGCCGACTTGTTTGTGGTGACTAGCTGATGAGCATATCACGCA
GGTTGCCGATTTGATTCTTTGACACTCGGCCTTAACGAGAAGAGACGTTT
TCAGACGCGCCTTTTTCGTGATTCAATGAAGGAAGCACACAAATCATCAT
GACGGGATAAGGATAAGCACCAAGGTCTTGGTGCGCCAAGACGCGATGCC
CTCCCACCGAGGCACCGGCGATACCGTCGCCGCCTTCTTCTGCTATGTTG
CATTTTTCAGCTGTCCACCACCGGCTGGTTTCCTCTGCATTTTTCTCTCT
CTCCGGCAGTCTCTCTCACGCCGTCCTCGCTGTCTCTTTCCTTTTTGCGG
AGCGTTGGGCAATTGACTCCCCCTTTCTTGCTACGATGGAAACATGGAAA
CCGCAAGGCAGGATAAGACAGTCCGCATGCCTTCTCGTTCTGCAAACCGC
TTGAGGAAGTCAACAAATTACTTGTATGTTTTACGCTCGTCGCCCGCAAC
GTCCAACCAGTATATTTCCAAATCTTGGTACTTCTGTATCAATGCGCGTT
CTGTGTTTCGTCAGGACTTTCGACGACATCGAGATCCGCGACATCTCCCT
GGAGGACTACATCGCGGTGAAGGGCAAGTACGCCACCTACCTTCCCCACA
CGGCCGGCCGCTACCAGAAGAAGCGCTTCCGCAAGGCCACC GTGAGTATT
ATAAGATAGAAGTGCCTGCCTCCCCGTCAACTTTTTGTTTTTTATGACTC
ACCGAATCCATAGCGTCAACGGCAGGCTCACCAATCTACGATCTTTCTTG
TGGATCCTCCTTGTTGCCTCTTCAATCCCCGTCAACCTTCTTCGTTTATG
GTGCTTGGCGTTGCTGCTTTCTTGTCGATCCTCCTTCTTGCCTCTTCAAT
CCCCGGTCTTTCTTGGCATATGGTTTGGCGTTGCTGCTTTCTTGTCGATC
CTCCTTCTTGCCTATTCAATCCCCAGTCGTTCTTAGTTTATGGTGCTTGG
CTTTTCTACTTTTTTGCCGATCCTCCCCTCGTTTATGGCCGCTCAATCCC
CGGCGTATGTTGGTTTGTGATGCTTTGCTTTGCTTTGCGATGCTGAAGCG
GCAAGTCAAACAGGCGTTGGGTCAGTTGCCGCCTAGTTTTGTTATTGCCC
GGACGAGGCATCTCGTCATCGTTTCAGGTTCAACCGTTTGTGTAGGCAGT
CTTGCGGGGGGGGCAGCTACAACTGTAGTACCCTTTGTTGCGCAGCCACC
CCCGTCCGTTTCGACCCTCGGGCTTGTGCCTCAGTTCGATGGGATAGTGT
TGCTGCCGCCTTCATGGCTATCGTTCTGTGGTCCTCCAATCAACTCCCCG
TGCTGTTGCGACGGCGGTACCTGCTGTGTTGATTCCGTCATCAGTCGTTA
CCCTCACTGCTGAATCTTCACCGTCCCATATGATACGATATGCCCGAAGA
ATCAAAGCCCATGGTATGTATTGTGGCAGGAAACTAAACCCAACCCACAC
ACACGTCTACGGTAATTTTCACCGCTGTCCGGCTGACTAAAATCAAAACG
TGTGTGCTTGTTCCGATCGCACCATCGACATGGACGTCAACCAGTGCCCC
ATCGTGGAGCGCCTTTGCTGCGCCTTGATGCGCAAGGGCCGCAACAGCGG
CAAGAAGCTCATGGCTGCCCGCATCGTCAAGCACACCCTGGAGATCATCC
ACCTCCTCACCGACCAGAACCCCGTCCAG GTGAGCACAAGCATCATTTTT
TTTTTGGAGGTCACCCCTTCGTTTTCTGGCCATCAGTCCTTACACCTAAA
TGCCTCTCTTTCTTTTGTCATTCCTGTTTTTCTGGACGTCAGTCCTTGCA
CGTTACTACAGTAGCGCCTAAGGACTGACGTGATGAAAAAAAGCGATGAC
AAAAAAAAACAAGCATCAAGGAGTGAGGACTGACGTCCAGAAAAACAAGA
ATGACGAAGAATAGCTTTAGGTGTAAGGACTGATGTCCAGAAAAGGGAGG
GACGACCAAAAAACAAATACTGCGGTCCTTACACCTTTTCGGTACAACAG
TTGTGAACGCACCAGCTGGGGGTCACACAGGAGGAAAGTTAGGCCAACGC
AGGATTCGTTTTCTCGGCCTTCCTTCTTCGGTGCAGCTACATGCGTGGAA
TAATTTCTGTGGCCTGGCAATCTGCACGTGGAACGACGAAGCTGTAGCTT
CTGTGTACAACTACGCAGCCGTCTCTTTTTCACATCGCATCGCGATACAA
TGTGACGGCCGGTTCGAGGAGCCACTGCGATCGTGTGACCAAGCTGGTGG
GGAACCATTTGCAGGATGGAGTTCGAGTTCCAAGCACGCGCTGGAACCCA
TGCTCAAGAACGATTTTCCTCTCGTAATGCCACTCACTGTAGTGCAGTTC
TTGGTAGATGAGCGTTGGCTCACGGGGCCGAGGCAAAGATAGCGCGCTTT
CACCGAGCTTTCATGTAGTGCTTTAGAAAGACGTCCCAATCACACCATCG
GGAGCAAGTCTCACGCGGCTGACAAAAAGCAGCCGTTACACTTTGCTTCC
GGTTTTGATGTGGAAACCCCATAAAATATGAACTCTTTCTACGGTTCGGC
CCGCTCTCTCGACTTTCCCGCATGCCGTTTGCTACAGTTTTTGATAACAG
CACCCCCCGAATACAAAGTATATCCCTCCAATCAACTCCGACGTTTCGGA
CCCAATTGCGTGTGAAAGTGGTTGCCCACCCGGCGCGTCAGATCTAAAAT
AGAACAGACGCAATCGTCTATCTTTCTCCCCGAGCCCAAGTCCTGAACAA
ACGAAGTGATGGCGCCTACAGAAGACAGCATGGCAGCACCTTTTCTTTTT
CTTCGCCGACTTCAGGACCAATAATGCGTCCCTCGAGACAACAGAAGGCG
CGCCAAGTTTCAAGCGTTGCATCTTGATCATGCTCGTTGTCGTCGCCGTT
TACGTGAACCAGAAGCTTGAAAAGCGCCACCGTAATGATAACATCCAATC
CACTGTACGAAACACGCACGTTTTTAACATTTGCTTCCGTCGCTCGGTGC
TTGACTCTGGGAACCCTGGACTGTTTTCCGCCTCGAAGGTGCTCGTGGAC
GCGGTGATCAACTCGGGACCCCGGGAAGACTCCACGCGCGTGGGATCCGC
CGGTGTTGTGCGGCGCCAGGCCGTGGACCTCTCGCCTTTCCGCCGCGTGA
ACCAG GTATTCTACGTTTGTACCAGTACAGTATCACTTGTGCCATGTGGC
GCCGTGTCTGTTGAGACAGACGGTGTTCGTGGTCGGCGTGTTTTGTCGTG
CTGTGGCCCCGTACCGTACCACTGTGTCCCTTTTTGTGGACAGCGCGTGT
GTCTGGTTGTGCTTGCGCATGGGATGAGAGCAGAATGTCTCGTTCGGGGT
GTGTAGATTGGCGCACCAGGTTTGGTGCAGTCCGCACAAAGTTTTTTTTA
ATCGTGTGTGAATCTCCCAACAACGAGAATTTAGTCGAAAAACTGCTCAG
GTTTCGACTGTTTTTCCAATTCAGGCGATCTTGGCGGAGTTGCTTTCTCG
ATATACATGGATCGCCTATGTTTCAACATGGCGACGGTGCTACAATCGCG
TGCTGCAAGGTTATGGTTCACGTGACCTCCCTCCCGTGGTATGTTCAATC
GTTGACTCTCCCTTCGTCTCTCTCCTCGTCCTTCTGCGGCCGCTTCTTGT
TATTGTCAGGCTCTGTACCTGATCACGACCGGCGCGCGCGAGTCGTCCTT
CCGCAACATCAAGACCATCGCCGAGTGCCTCGCAGACGAGATCATCAACG
CCGCCCGCGGGTCGTCGAACTCCTACGCCATCAAGAAGAAGGACGAGATC
GAGCGCGTGGCCAAGGCTAACCGGTAG ATTTTCTCGCGGCTAGTTTTCCC
CCTCGGAAGGAAGGCCAGCAAGACGACGGCCTCCTCTCTTCTGTCCTGTC
GTGTACCGCCGCTTTTTTCTGGACAAGACACGCGTCTCCTTGCGGAGATG
TTGGGCCTTTTGTTTTGAGAGCGTACGCGCGCGGTCTCACGATTTTTTTG
TGGGGGTGTGGTGGTGGGCCTCTGGCTCTTGTTGCTTCCGAGAGGGGGGG
GGGGTTGTTCTGACTACTATGGGGAGGTTCGGCGAAGGGAGAGGGCAACA
GGGATGATGCATTCCTCTCTCTTGGTCGCTCTGCGGTTAAATGCAGGACT
AAAAATGACATCTGAAACCAACGAATGGTTGCGCTGCCGGTTGTGACGGC
GGTGTGGGGGTGAAGACATCTCGTGTGTCTGTCATCTCCATGAACAGTCG
CGCCCACATGTCCCCCGATGCTGAACCCCGACTACTTGTCTCCCGTACTA
CTTCTGGGTGTCACAACGAAAACGACCGCACGGAGAGTCCAATGTCAGGT
GACGAAGGACGAGGGTCTTCCGTGTCTTCAACCTAAAC back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig95:604821..610358-
>mRNA_E-siliculosus-1a_M_contig95.17535.1 ID=mRNA_E-siliculosus-1a_M_contig95.17535.1|Name=mRNA_E-siliculosus-1a_M_contig95.17535.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1404bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:604821..610358- (Ectocarpus siliculosus Ec864m_EcPH12_78m male) back to top