mRNA_E-siliculosus-1a_M_contig95.17533.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig95.17533.1 vs. uniprot
Match: A0A6H5KHR5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHR5_9PHAE) HSP 1 Score: 1011 bits (2615), Expect = 0.000e+0 Identity = 608/722 (84.21%), Postives = 623/722 (86.29%), Query Frame = 2 Query: 212 MRERSLRRSLRDLQASRRNANSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA--GVDPSTVDEAIGGGEG-GEGETVAVRGGSGMMQLPRVPFCRAGADVANMWMPVWNPDSQLMETAKRVVVFGGRGVDYYDKRADDQLSYLSDMWALHITNTGFRWNKVVPIGQVRPSARWQTGDSVAYGASLVVYGGDDQTTNQVGGLGDLWVFSPRGTRSRLHASEKDYSYDSSDRRSEWTEYSRAGKLPAERREPSLTMVNSTLLLQGGKVEDGESNERCDSRFFLVDLGDPQGKWREGPSFPGECGIGGTMDTVNITSKHTGDGENEVRAVVFGGCKLAPDGVFSCSNDLYAYDLATNRWEEIVPKSDADAFACEADDTGESPALRPEAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAVCPGVSTSRPLGRHGHASAYIESKTDNMNALFIFGGRENMDDLTPLGDLWMFDFTTMRWSEITPDSKKPAPCNRFYHSLTVSVMPVFRGCCRRRAFFSFFFFSGMAKVVWATAWMDMLFRVWQGGVGDGVASLVVFGGETITRTGQTVFMNDVWLYTPQTGAWREVSQSDCKEGASGIARGGNWTAVIALASMLVFVVVVQCFLHRICPQYRPPKXXXXXXXXXXXXXXXXXXXXXXXXXXAETTRSKSESSLQDTHGLLASSSSNPEKHSYQAVAVQE 2368
MRERSLRRSLRD QAS+RNAN T XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX A G+DP TVDEA+ EG G+G AVRGGSGMMQLP VPFCRAGADVANMWMPVWNPDSQL+ETAKRVVVFGGRGVDYY+KRADDQLSYLSDMWALHITNTGFRWNKVVP+G V PSARWQTGDSVAYGASLVVYGGDDQTTNQ+GGLGDLWVFSP GTRSRLHASEKDYSYDS DRRSEWTEYSRAGKLP ERREPSLTMVNSTLLLQGGKVEDGESNERCDSRFFLVDLGDPQGKWREGPSFPGECGIGGTM+TVNITSKHT DGENEVRAVVFGGCKLAPDGVFSCSNDLYAYDLATNRWEEIVPKSDADAFACEADDTGESPALRP A XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX KAVCPGVSTSRPLGRH HASAYIESKTDNMNALFIFGGRENMD+LTPLGDLWMFDFTTMRW EITPDS KPAPCNRFYHSLTV WQGGVGDGVASLVVFGGETITRTGQTVFMNDVWLYTPQTGAWR+VS+SDCKEGASGIARGGNWTA+IALASMLV VVVVQCFLHR+CPQY+PP XXXXXXXXXXXXX AE TRSKS SSLQDTHGLLASSSSNPEKHSYQAVA QE
Sbjct: 1 MRERSLRRSLRDKQASQRNANRTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPGGNSASAGLDPGTVDEAV---EGEGDGGAAAVRGGSGMMQLPSVPFCRAGADVANMWMPVWNPDSQLVETAKRVVVFGGRGVDYYNKRADDQLSYLSDMWALHITNTGFRWNKVVPVGHVHPSARWQTGDSVAYGASLVVYGGDDQTTNQMGGLGDLWVFSPGGTRSRLHASEKDYSYDSLDRRSEWTEYSRAGKLPGERREPSLTMVNSTLLLQGGKVEDGESNERCDSRFFLVDLGDPQGKWREGPSFPGECGIGGTMNTVNITSKHTTDGENEVRAVVFGGCKLAPDGVFSCSNDLYAYDLATNRWEEIVPKSDADAFACEADDTGESPALRPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWDKK-----KAVCPGVSTSRPLGRHAHASAYIESKTDNMNALFIFGGRENMDELTPLGDLWMFDFTTMRWREITPDSNKPAPCNRFYHSLTV----------------------------------------WQGGVGDGVASLVVFGGETITRTGQTVFMNDVWLYTPQTGAWRQVSRSDCKEGASGIARGGNWTALIALASMLVLVVVVQCFLHRVCPQYQPPXXXXXXXXXXXXXXGNATGGASAREGGAEATRSKSVSSLQDTHGLLASSSSNPEKHSYQAVAAQE 674
BLAST of mRNA_E-siliculosus-1a_M_contig95.17533.1 vs. uniprot
Match: D7G1X6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1X6_ECTSI) HSP 1 Score: 799 bits (2064), Expect = 1.640e-285 Identity = 401/515 (77.86%), Postives = 406/515 (78.83%), Query Frame = 2 Query: 494 MMQLPRVPFCRAGADVANMWMPVWNPDSQLMETAKRVVVFGGRGVDYYDKRADDQLSYLSDMWALHITNTGFRWNKVVPIGQVRPSARWQTGDSVAYGASLVVYGGDDQTTNQVGGLGDLWVFSPRGTRSRLHASEKDYSYDSSDRRSEWTEYSRAGKLPAERREPSLTMVNSTLLLQGGKVEDGESNERCDSRFFLVDLGDPQGKWREGPSFPGECGIGGTMDTVNITSKHTGDGENEVRAVVFGGCKLAPDGVFSCSNDLYAYDLATNRWEEIVPKSDADAFACEADDTGESPALRPEAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAVCPGVSTSRPLGRHGHASAYIESKTDNMNALFIFGGRENMDDLTPLGDLWMFDFTTMRWSEITPDSKKPAPCNRFYHSLTVSVMPVFRGCCRRRAFFSFFFFSGMAKVVWATAWMDMLFRVWQGGVGDGVASLVVFGGETITRTGQTVFMNDVWLYTPQTGAWREVSQS 2038
MMQLPRVPFCRAGADVANMWMPVWNPDSQL+ETAKRVVVFGGRGVDYYDKRADDQLSYLSDMWALHITNTGFRWNKVVPIGQVRPSARWQTGDSVAYGASLVVYGGDDQTTNQVGGLGDLWVFSPRG+RSRLHASEKDYSYD+SDRRSEWTEY R GKLP ERREPSL MVNSTLLLQGGK+EDGESNERCDSRFFLVDLGDPQG+WREGPSFPGECGIGGTMDTVNIT KHT DGENEVRAVVFGGCKLAPDGVFSCSNDLYAYDLATNRWEEIVPKSDADAFACEADDTGESPALR HGHASAYIESKTDNMNALFIFGGRENMDDLTPLGDLWMFDFTTMRWSEITPDSKKPAPCNRFYHSLTV WQGGVGDGVASLVVFGGETITRTGQTVFMNDVWLYTPQTGAWREV S
Sbjct: 1 MMQLPRVPFCRAGADVANMWMPVWNPDSQLVETAKRVVVFGGRGVDYYDKRADDQLSYLSDMWALHITNTGFRWNKVVPIGQVRPSARWQTGDSVAYGASLVVYGGDDQTTNQVGGLGDLWVFSPRGSRSRLHASEKDYSYDASDRRSEWTEYRRTGKLPGERREPSLAMVNSTLLLQGGKMEDGESNERCDSRFFLVDLGDPQGEWREGPSFPGECGIGGTMDTVNITRKHTADGENEVRAVVFGGCKLAPDGVFSCSNDLYAYDLATNRWEEIVPKSDADAFACEADDTGESPALR-------------------------------------------------------------HGHASAYIESKTDNMNALFIFGGRENMDDLTPLGDLWMFDFTTMRWSEITPDSKKPAPCNRFYHSLTV----------------------------------------WQGGVGDGVASLVVFGGETITRTGQTVFMNDVWLYTPQTGAWREVRSS 414
BLAST of mRNA_E-siliculosus-1a_M_contig95.17533.1 vs. uniprot
Match: A0A836CN12_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN12_9STRA) HSP 1 Score: 131 bits (329), Expect = 1.900e-28 Identity = 185/570 (32.46%), Postives = 247/570 (43.33%), Query Frame = 2 Query: 620 RGVDYYDKR-ADDQLSYLSDMWALHITNTGFRWNKV-VPIGQVRPSARWQTGDSVAYGAS--LVVYGGDDQTTNQVGGLGDLWVFSPR--GTRSRLHASEKDYSYDSSDRRSEWTEYSRAGKLPAERREPSLTMVNST------------------------------LLLQGGKVEDGESNERCDSRFFLVDLGD---PQGKWREGPSFPGECGIGGTMDTVNITSKHTGDGENEV-----------------------RAVVFGGCKLAPDGVFSCSNDLYAYDLATNRWEEIVPKSDADAFACEADDTGESPALRPEAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAVCPGVSTSRPLGRHGHASAYIESKTDNMNALFIFGGRENMDDLTPLGDLWMFDFTTMRWSEI--TPDSKKPAPCNRFYHSLTVSVMPVFRGCCRRRAFFSFFFFSGMAKVVWATAWMDMLFRVWQGGVGDGVASLVVFGGETITRTGQTVFMNDVWLYTPQTGAWREVSQSDCKEGASGIARGGN---WTAVIALASMLVFVVV 2128
R +DY ++ A Q ++L+D W+LHITNTGF W ++ V G+ P RW AY S LVV+GG+ + G LGD+W F+P+ + L A+ + S+ S LP +P + N T L++ GGK E CD+R F +DLG G+W PG C G T+ V +T T D + R V +GG +G +DL+AYD A + WE + P DA+ GE+ +R E XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX PL R H + +++ +++LFI GGR L D+W F+F T RWS+ P+ + P RF H F VWQGG GDG LVV GGE I +G NDVW+Y+ Q +WR+V +DC GA+G AR A++A+A VFV +
Sbjct: 11 RRLDYLVQQPAAQQQAFLNDAWSLHITNTGFVWKELDVGGGRRAPLPRWHFAAG-AYNDSEALVVFGGEARG----GVLGDVWSFAPQLAAAAAPLPAA----AIPSATMASTPIAPPLLPPLP----QPWFKLRNGTAAXXXXXXXXXXXXXXXRLXXXXXXXGGGVLVVNGGKAPGAEFG--CDARTFALDLGGGAAAAGEWMPRAPLPGLCRWGHTLTRVTVTP--TPDSSAQAGGVXXXXXXXXXSPPADAVAPRERLVAYGGRHCGSEGC-QLFSDLWAYDAAADAWERLDPVMDAE---------GETGIVREEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------------------PLPREQHGAVFVQE----LDSLFIHGGRWTDQPGPALDDIWSFNFKTRRWSQHWQLPNGRPPP---RFGHG----------------------------------------FAVWQGGQGDGSPGLVVIGGEVI-ESGARYLSNDVWMYSIQDRSWRQVGLNDCAPGATGRARAPPPLPLGALLAVAFAAVFVAM 486 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig95.17533.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig95.17533.1 >prot_E-siliculosus-1a_M_contig95.17533.1 ID=prot_E-siliculosus-1a_M_contig95.17533.1|Name=mRNA_E-siliculosus-1a_M_contig95.17533.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=720bp MRERSLRRSLRDLQASRRNANSTTSSRVAAAAAAAAAGALLLLPLLFSQVback to top mRNA from alignment at E-siliculosus-1a_M_contig95:580607..591303- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig95.17533.1 ID=mRNA_E-siliculosus-1a_M_contig95.17533.1|Name=mRNA_E-siliculosus-1a_M_contig95.17533.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=10697bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:580607..591303- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig95:580607..591303- >mRNA_E-siliculosus-1a_M_contig95.17533.1 ID=mRNA_E-siliculosus-1a_M_contig95.17533.1|Name=mRNA_E-siliculosus-1a_M_contig95.17533.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=4320bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:580607..591303- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |