mRNA_E-siliculosus-1a_M_contig95.17522.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig95.17522.1
Unique NamemRNA_E-siliculosus-1a_M_contig95.17522.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig95.17522.1 vs. uniprot
Match: D7G1W5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1W5_ECTSI)

HSP 1 Score: 53.1 bits (126), Expect = 2.130e-5
Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = -1 
Query:  572 RRLATELESLQDNAAEFGSQKSGLTG 649
            RRLATELESLQDNAAEFGSQKSGLTG
Sbjct:   14 RRLATELESLQDNAAEFGSQKSGLTG 39
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BLAST of mRNA_E-siliculosus-1a_M_contig95.17522.1 vs. uniprot
Match: A0A6H5KTQ0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTQ0_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 6.110e-5
Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = -1 
Query:  572 RRLATELESLQDNAAEFGSQKSGLTG 649
            RRLATELESLQDNAAEFGSQKSGLTG
Sbjct:  127 RRLATELESLQDNAAEFGSQKSGLTG 152
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig95.17522.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G1W5_ECTSI2.130e-5100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KTQ0_9PHAE6.110e-5100.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig95contigE-siliculosus-1a_M_contig95:511041..511689 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size381
Model size649
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig95.17522.1prot_E-siliculosus-1a_M_contig95.17522.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig95 511255..511635 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936509.3450909-UTR-E-siliculosus-1a_M_contig95:511040..5112541622936509.3450909-UTR-E-siliculosus-1a_M_contig95:511040..511254Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig95 511041..511254 +
1696251110.115442-UTR-E-siliculosus-1a_M_contig95:511040..5112541696251110.115442-UTR-E-siliculosus-1a_M_contig95:511040..511254Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig95 511041..511254 +
1622936509.3719466-UTR-E-siliculosus-1a_M_contig95:511635..5116891622936509.3719466-UTR-E-siliculosus-1a_M_contig95:511635..511689Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig95 511636..511689 +
1696251110.1391377-UTR-E-siliculosus-1a_M_contig95:511635..5116891696251110.1391377-UTR-E-siliculosus-1a_M_contig95:511635..511689Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig95 511636..511689 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936509.358142-CDS-E-siliculosus-1a_M_contig95:511254..5116351622936509.358142-CDS-E-siliculosus-1a_M_contig95:511254..511635Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 511255..511635 +
1696251110.1268797-CDS-E-siliculosus-1a_M_contig95:511254..5116351696251110.1268797-CDS-E-siliculosus-1a_M_contig95:511254..511635Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig95 511255..511635 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig95.17522.1

>prot_E-siliculosus-1a_M_contig95.17522.1 ID=prot_E-siliculosus-1a_M_contig95.17522.1|Name=mRNA_E-siliculosus-1a_M_contig95.17522.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=127bp
MFRNKTQAHTGHEGAGSDGRRERRGDATRWMDPGGSKNKRASRRASIQSK
RHTPQIIHTKYANAEGTETSQTSSCSFSLPLAVGEHANTGRHESLLFTTP
LFTCTCQEHDKKTRGGHTPSRQSRLL*
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mRNA from alignment at E-siliculosus-1a_M_contig95:511041..511689+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig95.17522.1 ID=mRNA_E-siliculosus-1a_M_contig95.17522.1|Name=mRNA_E-siliculosus-1a_M_contig95.17522.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=649bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:511041..511689+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GGGGAGGAGAGAGAAAAACCGTGATTTTTAGCAAGGACCGGGCTTACCGG
TGACCAACGCAAACGTCAGTCTCGTCAGTCTCAGCGCGGTTGAAAACACA
AAATGCTTCTGGGACCCCGTGGGTGGGCGACATGAGGAGTTATTCATATA
CAACTCTTGTGTATGTTTTTGTATGGTACTGTAGGGTGTGGGTGGCAGAT
CGAAACGAGAGAGGATGTTTCGGAACAAAACACAAGCGCACACCGGACAC
GAGGGTGCAGGCAGCGACGGGCGGCGAGAGAGGAGAGGCGATGCGACGCG
ATGGATGGATCCAGGCGGGTCCAAAAACAAGAGAGCGTCCCGCCGCGCAT
CCATCCAATCAAAGCGCCACACACCGCAGATAATCCATACTAAATACGCA
AACGCAGAGGGGACCGAAACATCACAGACGTCCTCCTGCAGTTTCTCGCT
ACCCTTAGCTGTAGGAGAGCATGCCAATACTGGTCGACATGAGAGTCTGC
TGTTCACAACACCTCTATTTACATGTACCTGCCAAGAGCATGACAAAAAA
ACACGGGGGGGACACACACCTTCCCGTCAGTCCCGACTTCTGTGACCCGA
ATTCCGCCGCGTTGTCCTGCAGGGATTCCAGCTCCGTGGCAAGGCGTCG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig95:511041..511689+

>mRNA_E-siliculosus-1a_M_contig95.17522.1 ID=mRNA_E-siliculosus-1a_M_contig95.17522.1|Name=mRNA_E-siliculosus-1a_M_contig95.17522.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=762bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:511041..511689+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGTTTCGGAACAAAACACAAGCGCACACCGGACACGAGGGTGCAGGCAG
CGACGGGCGGCGAGAGAGGAGAGGCGATGCGACGCGATGGATGGATCCAG
GCGGGTCCAAAAACAAGAGAGCGTCCCGCCGCGCATCCATCCAATCAAAG
CGCCACACACCGCAGATAATCCATACTAAATACGCAAACGCAGAGGGGAC
CGAAACATCACAGACGTCCTCCTGCAGTTTCTCGCTACCCTTAGCTGTAG
GAGAGCATGCCAATACTGGTCGACATGAGAGTCTGCTGTTCACAACACCT
CTATTTACATGTACCTGCCAAGAGCATGACAAAAAAACACGGGGGGGACA
CACACCTTCCCGTCAGTCCCGACTTCTGTGAATGTTTCGGAACAAAACAC
AAGCGCACACCGGACACGAGGGTGCAGGCAGCGACGGGCGGCGAGAGAGG
AGAGGCGATGCGACGCGATGGATGGATCCAGGCGGGTCCAAAAACAAGAG
AGCGTCCCGCCGCGCATCCATCCAATCAAAGCGCCACACACCGCAGATAA
TCCATACTAAATACGCAAACGCAGAGGGGACCGAAACATCACAGACGTCC
TCCTGCAGTTTCTCGCTACCCTTAGCTGTAGGAGAGCATGCCAATACTGG
TCGACATGAGAGTCTGCTGTTCACAACACCTCTATTTACATGTACCTGCC
AAGAGCATGACAAAAAAACACGGGGGGGACACACACCTTCCCGTCAGTCC
CGACTTCTGTGA
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