mRNA_E-siliculosus-1a_M_contig95.17518.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig95.17518.1 vs. uniprot
Match: D7G1W1_ECTSI (Carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 6 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1W1_ECTSI) HSP 1 Score: 1014 bits (2622), Expect = 0.000e+0 Identity = 539/578 (93.25%), Postives = 546/578 (94.46%), Query Frame = 1 Query: 1 MVAADMGHLKDTVEKLDRIVRETMGQHGKDLAAVLVQLGLERPSRSNLVAGSESRPIPAEGLANNNAGGAKPAWPSPLKQAPQDRLQLAGGSRQGQGDASVLGAGGGVDHVAVRGTAEDGSLAGGGPTTGKALGRDAQANGKGATGGLTKEGARGAAEGVAVWNAYQRGKWVNGQWVPKVLQDDTSPDLSQLATTGKKQRRVLLLSEKRSGGQAVGGVLNADTRVFYVADPCRMGGGPEALDAGACSLAVTRLLACQPTTNDIRNLFSFSYIVERSRVLSESEGLRWKAGGTPDENDEETRAAVIRQCRLSSVVVVKETRLAEVAPRLSTPELGLEFLHIVRDPRAAIHGMAEQWEKSDNKMERSMARDCSDVASRLCASTENKLKFLTLLGKQRFRVLKHEMVTEAIRLTSMRGSSENSPGTAVTGNGSKSTMGGFDWATRWAVEMPTFRRQQVQLVCQPLLVALGYDDPEDPEEQQDAXXXXXXXXXXXXSSEELGTAFDGTSSDRGAGGTDFGSSMTDGVNGVGHGGGGAEKLRVSSALPSSSLSAATAAKNPESVAAAADTILPGHDAIARHYG 1734
MVAADMGHLKDTVEKLD IVRETMGQHGKDLAAVLVQLGLERPSRSNLVAGSESRP+PAEGL NN A GA PAWPSPL+QAPQD+LQLAGGSRQGQGDASVLGAGGGVDHVAVRGTAEDGSLAGGGPTTGKALGRD Q NGKGA GGLT+EGARGAAEGVAVWNAYQRGKWVNGQWVPKVLQDDTSPDLSQLATTGKKQRRVLLLSEKRSGG AVGGVLNADTRVFYVADPCRMGGGPEALDAGACSLAVTRLLACQPTTNDIRNLFSFSYIVERSRVLSESEGLRW+A GTPDENDEETRAAVIRQCRLSSVVVVKETRLAEVAPRLSTPEL LEFLHIVRDPRAAIHGMAE WEKSDNKMERSMARDCSDVASRLC S ENKLKFLTLLGKQRFRVLKHEMVTEAIR TSMR S+ENSPGTAV GNGSKSTMGGFDWATRWAVEMPTFRRQQVQL C PLLVALGYDDPEDPEEQQDA XXXX SSEEL TAFDGTSSDRGAGGT FGSSMTDGVN VGHGGGGAEKLR SSALPSSSLSAATAA+NPESVAAAADTILPG DAIARHYG
Sbjct: 1 MVAADMGHLKDTVEKLDHIVRETMGQHGKDLAAVLVQLGLERPSRSNLVAGSESRPMPAEGLTNNKARGATPAWPSPLQQAPQDQLQLAGGSRQGQGDASVLGAGGGVDHVAVRGTAEDGSLAGGGPTTGKALGRDTQGNGKGAAGGLTEEGARGAAEGVAVWNAYQRGKWVNGQWVPKVLQDDTSPDLSQLATTGKKQRRVLLLSEKRSGGHAVGGVLNADTRVFYVADPCRMGGGPEALDAGACSLAVTRLLACQPTTNDIRNLFSFSYIVERSRVLSESEGLRWQAEGTPDENDEETRAAVIRQCRLSSVVVVKETRLAEVAPRLSTPELDLEFLHIVRDPRAAIHGMAELWEKSDNKMERSMARDCSDVASRLCTSAENKLKFLTLLGKQRFRVLKHEMVTEAIRSTSMRSSAENSPGTAVAGNGSKSTMGGFDWATRWAVEMPTFRRQQVQLACHPLLVALGYDDPEDPEEQQDAGEXXXXESQGESSSEELSTAFDGTSSDRGAGGTGFGSSMTDGVNRVGHGGGGAEKLRASSALPSSSLSAATAARNPESVAAAADTILPGPDAIARHYG 578
BLAST of mRNA_E-siliculosus-1a_M_contig95.17518.1 vs. uniprot
Match: A0A835ZGF5_9STRA (HEAT repeat-containing protein 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGF5_9STRA) HSP 1 Score: 70.5 bits (171), Expect = 7.940e-9 Identity = 48/184 (26.09%), Postives = 83/184 (45.11%), Query Frame = 1 Query: 592 KQRRVLLLSEKRSGGQAVGGVLNADTRVFYVADPCRMGG-GPEALDAGACSLAVTRLLACQPTTNDIRNLFSFSYIVERSRVLSESEGLRWKAGGTPDENDEETRAAVIRQCRLSSVVVVKETRLAEVAPRLSTPELGLEFLHIVRDPRAAIHGMAEQWEKSDNKMERSMARDCSDVASRLCAS 1140
+Q+R+L++SE RSG G + N++ ++FY+ +PC+ GG G AL AC + RLL C+PT D+ N+F D ++ V+++ R V V ++ PR + + +H+VRDPR A+ W D +E C +++ ++
Sbjct: 246 EQKRLLIVSEPRSGSTQFGELFNSNEQLFYLFEPCKGGGDGGTALYDEACGYLLQRLLECEPTVKDVDNMF----------------------------RDRQSAGVVVKEIRTVGVHV-------DMLPRAT------KVMHLVRDPRDAMLSALALWRGQDGGLEFQSGEFCRRTMAKITST 388 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig95.17518.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig95.17518.1 >prot_E-siliculosus-1a_M_contig95.17518.1 ID=prot_E-siliculosus-1a_M_contig95.17518.1|Name=mRNA_E-siliculosus-1a_M_contig95.17518.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=579bp MVAADMGHLKDTVEKLDRIVRETMGQHGKDLAAVLVQLGLERPSRSNLVAback to top mRNA from alignment at E-siliculosus-1a_M_contig95:474216..481651- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig95.17518.1 ID=mRNA_E-siliculosus-1a_M_contig95.17518.1|Name=mRNA_E-siliculosus-1a_M_contig95.17518.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=7436bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:474216..481651- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig95:474216..481651- >mRNA_E-siliculosus-1a_M_contig95.17518.1 ID=mRNA_E-siliculosus-1a_M_contig95.17518.1|Name=mRNA_E-siliculosus-1a_M_contig95.17518.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=3474bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:474216..481651- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |