mRNA_E-siliculosus-1a_M_contig95.17516.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E-siliculosus-1a_M_contig95.17516.1
Unique Name	mRNA_E-siliculosus-1a_M_contig95.17516.1
Type	mRNA
Organism	Ectocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)

Homology

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BLAST of mRNA_E-siliculosus-1a_M_contig95.17516.1 vs. uniprot
Match: D7G1V9_ECTSI (Dynein light chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1V9_ECTSI)

HSP 1 Score: 220 bits (560), Expect = 6.650e-73
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 1

Query:    1 MGEMVPDWAQMWGAKVKMPTDMRDDMLRDAIETCRDALDHCADFEAEGLAAAEKIKKHFDARWDPSWHVIIGRNFGSFVTHETTCFVYFYLADKAIMMYKAG 306
            MGEMVPDWAQMWGAKVKMPTDMRDDMLRDAIETCRDALDHCADFEAEGLAAAEKIKKHFDARWDPSWHVIIGRNFGSFVTHETTCFVYFYLADKAIMMYKAG
Sbjct:    1 MGEMVPDWAQMWGAKVKMPTDMRDDMLRDAIETCRDALDHCADFEAEGLAAAEKIKKHFDARWDPSWHVIIGRNFGSFVTHETTCFVYFYLADKAIMMYKAG 102

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BLAST of mRNA_E-siliculosus-1a_M_contig95.17516.1 vs. uniprot
Match: A0A836CJA1_9STRA (Dynein light chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJA1_9STRA)

HSP 1 Score: 162 bits (410), Expect = 5.080e-50
Identity = 72/102 (70.59%), Postives = 84/102 (82.35%), Query Frame = 1

Query:    1 MGEMVPDWAQMWGAKVKMPTDMRDDMLRDAIETCRDALDHCADFEAEGLAAAEKIKKHFDARWDPSWHVIIGRNFGSFVTHETTCFVYFYLADKAIMMYKAG 306
            M  M  DW  MWGAKVK+P DM DD+L+DAI+T R+ LD C DFEAEGLA+AEKIK+H D +WDP WHV+IGRNFGSFVTHET  F+YFY+ DKA+MMYKAG
Sbjct:    1 MPSMGDDWRMMWGAKVKLPLDMPDDILKDAIDTSREVLDKCHDFEAEGLASAEKIKRHLDEQWDPHWHVVIGRNFGSFVTHETRMFLYFYIGDKAVMMYKAG 102

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BLAST of mRNA_E-siliculosus-1a_M_contig95.17516.1 vs. uniprot
Match: A0A7S2W886_9STRA (Dynein light chain n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W886_9STRA)

HSP 1 Score: 146 bits (368), Expect = 1.280e-43
Identity = 67/102 (65.69%), Postives = 78/102 (76.47%), Query Frame = 1

Query:    1 MGEMVPDWAQMWGAKVKMPTDMRDDMLRDAIETCRDALDHCADFEAEGLAAAEKIKKHFDARWDPSWHVIIGRNFGSFVTHETTCFVYFYLADKAIMMYKAG 306
            MGE VP+W  MWGAKVK P D+ DDML+DAI T +  +    DFEAEG+  AEKIK+ FD RW P WHVIIG+NFGSFVTHET  F+YFY  DKA+M+YKAG
Sbjct:    1 MGEEVPEWQMMWGAKVKTPVDVPDDMLKDAILTSQRLIGEATDFEAEGVDVAEKIKREFDERWTPYWHVIIGKNFGSFVTHETKRFLYFYFDDKAVMIYKAG 102

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BLAST of mRNA_E-siliculosus-1a_M_contig95.17516.1 vs. uniprot
Match: A0A7S1TPD3_9STRA (Dynein light chain n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TPD3_9STRA)

HSP 1 Score: 145 bits (365), Expect = 3.790e-43
Identity = 63/98 (64.29%), Postives = 77/98 (78.57%), Query Frame = 1

Query:   13 VPDWAQMWGAKVKMPTDMRDDMLRDAIETCRDALDHCADFEAEGLAAAEKIKKHFDARWDPSWHVIIGRNFGSFVTHETTCFVYFYLADKAIMMYKAG 306
            + +W+ MWGA+VK+P DM DDML+DA+ET R   +   DFE +GL AAE IK  FD +W P+WHV++GR FGSFVTHET CFVYFYL DKA+MMYKAG
Sbjct:    6 IQEWSTMWGARVKVPCDMGDDMLKDAVETTRSVFEEFPDFENDGLKAAEAIKLAFDEKWTPNWHVVVGRGFGSFVTHETKCFVYFYLDDKAVMMYKAG 103

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BLAST of mRNA_E-siliculosus-1a_M_contig95.17516.1 vs. uniprot
Match: A0A7S1CI82_9STRA (Dynein light chain n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CI82_9STRA)

HSP 1 Score: 132 bits (333), Expect = 2.850e-38
Identity = 60/103 (58.25%), Postives = 76/103 (73.79%), Query Frame = 1

Query:    1 MGEMVP-DWAQMWGAKVKMPTDMRDDMLRDAIETCRDALDHCADFEAEGLAAAEKIKKHFDARWDPSWHVIIGRNFGSFVTHETTCFVYFYLADKAIMMYKAG 306
            MGE  P +W  MWGAKVK P+D+ DDML DAI   R AL+   D+E+EG A  +K+KK FD +W P WH ++G NFGSFVTHE   FVYFY+ADKA++++KAG
Sbjct:    1 MGESAPVEWKHMWGAKVKWPSDLPDDMLEDAITVTRAALEGIEDWESEGDAVVDKLKKTFDEKWGPHWHAVVGTNFGSFVTHEARRFVYFYVADKAVLLFKAG 103

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BLAST of mRNA_E-siliculosus-1a_M_contig95.17516.1 vs. uniprot
Match: H3GHN7_PHYRM (Dynein light chain n=21 Tax=Oomycota TaxID=4762 RepID=H3GHN7_PHYRM)

HSP 1 Score: 119 bits (299), Expect = 4.280e-33
Identity = 61/104 (58.65%), Postives = 70/104 (67.31%), Query Frame = 1

Query:    1 MGEMVPDWAQMWGAKVKMPTDMRDDMLRDAIE--TCRDALDHCADFEAEGLAAAEKIKKHFDARWDPSWHVIIGRNFGSFVTHETTCFVYFYLADKAIMMYKAG 306
            MGE  P W  MWGAKVKMP DM DD+L DAI+  T R       ++E  GLA  E+IK H D  WDP W V IGRNFGSFVTH T  FV+FY  +KA+M+YKAG
Sbjct:    1 MGE-APSWQHMWGAKVKMPCDMEDDVLEDAIKHVTSRLTKYDTEEWEKNGLAVCEEIKAHLDEAWDPHWVVCIGRNFGSFVTHVTRNFVFFYYNEKAVMIYKAG 103

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BLAST of mRNA_E-siliculosus-1a_M_contig95.17516.1 vs. uniprot
Match: A0A5D6XID8_9STRA (Dynein light chain n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XID8_9STRA)

HSP 1 Score: 119 bits (299), Expect = 4.280e-33
Identity = 60/104 (57.69%), Postives = 72/104 (69.23%), Query Frame = 1

Query:    1 MGEMVPDWAQMWGAKVKMPTDMRDDMLRDAIE--TCRDALDHCADFEAEGLAAAEKIKKHFDARWDPSWHVIIGRNFGSFVTHETTCFVYFYLADKAIMMYKAG 306
            MGE  P+W  MWGAKVKMP DM DD+L DAI+  T R A     ++E +GL   E+IK H D  W+P W V IGRNFGS+VTH T  FVYFY  +KA+M+YKAG
Sbjct:    1 MGE-APNWQHMWGAKVKMPCDMEDDVLEDAIKHVTSRLAKYDTEEWEKQGLTVCEEIKAHMDELWEPHWVVCIGRNFGSYVTHVTRNFVYFYFNEKAVMVYKAG 103

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BLAST of mRNA_E-siliculosus-1a_M_contig95.17516.1 vs. uniprot
Match: A0A7S2WLS4_9STRA (Dynein light chain n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WLS4_9STRA)

HSP 1 Score: 118 bits (295), Expect = 1.790e-32
Identity = 55/102 (53.92%), Postives = 69/102 (67.65%), Query Frame = 1

Query:    1 MGEMVPDWAQMWGAKVKMPTDMRDDMLRDAIETCRDALDHCADFEAEGLAAAEKIKKHFDARWDPSWHVIIGRNFGSFVTHETTCFVYFYLADKAIMMYKAG 306
            MGE V +W  +WGAKVK P +M DD+L+DAI T  + L  C +FE+ G  A + IK H D +W P W   IGRNFGS V+HET  FV+FY  DKA+M+YK G
Sbjct:    3 MGEEVREWQTIWGAKVKTPVEMPDDILKDAITTVTNELAACENFESNGNLAVQNIKDHMDHKWSPHWCCFIGRNFGSKVSHETRRFVFFYHNDKAVMLYKIG 104

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BLAST of mRNA_E-siliculosus-1a_M_contig95.17516.1 vs. uniprot
Match: K3WRF9_GLOUD (Dynein light chain n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WRF9_GLOUD)

HSP 1 Score: 116 bits (291), Expect = 7.070e-32
Identity = 59/104 (56.73%), Postives = 71/104 (68.27%), Query Frame = 1

Query:    1 MGEMVPDWAQMWGAKVKMPTDMRDDMLRDAIE--TCRDALDHCADFEAEGLAAAEKIKKHFDARWDPSWHVIIGRNFGSFVTHETTCFVYFYLADKAIMMYKAG 306
            MGE  P W  MWGAKVKMP DM DD+L D I+  T R A     ++E +GLA  E++K H D  W+P W V IGRNFGS+VTH T  FV+FY  +KAIM+YKAG
Sbjct:    1 MGE-APSWQYMWGAKVKMPCDMEDDVLEDVIKHVTTRLAKFDTEEWEKKGLAVCEELKAHMDTLWEPHWVVCIGRNFGSYVTHVTRNFVFFYYNEKAIMVYKAG 103

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BLAST of mRNA_E-siliculosus-1a_M_contig95.17516.1 vs. uniprot
Match: A0A1V9ZER7_9STRA (Dynein light chain n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9ZER7_9STRA)

HSP 1 Score: 115 bits (288), Expect = 2.020e-31
Identity = 56/104 (53.85%), Postives = 70/104 (67.31%), Query Frame = 1

Query:    1 MGEMVPDWAQMWGAKVKMPTDMRDDMLRDAIETCRDALDH--CADFEAEGLAAAEKIKKHFDARWDPSWHVIIGRNFGSFVTHETTCFVYFYLADKAIMMYKAG 306
            MGE  P W  MWGA+VK P DM DD+L D I+     L+     ++E +GLA  E+I+ H D  WDP+W V IGRNFGS+VTH T  FVYFY  +KAI++YKAG
Sbjct:    1 MGE-APSWQNMWGARVKTPCDMEDDVLEDVIKYVTQRLEQFDTEEWEKQGLAVCEEIRDHLDKAWDPAWVVCIGRNFGSYVTHVTRNFVYFYYNEKAILIYKAG 103

The following BLAST results are available for this feature:

BLAST of mRNA_E-siliculosus-1a_M_contig95.17516.1 vs. uniprot

BLAST of mRNA_E-siliculosus-1a_M_contig95.17516.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25

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POSITION

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Match Name	E-value	Identity	Description
D7G1V9_ECTSI	6.650e-73	100.00	Dynein light chain n=1 Tax=Ectocarpus siliculosus ...	[more]
A0A836CJA1_9STRA	5.080e-50	70.59	Dynein light chain n=1 Tax=Tribonema minus TaxID=3...	[more]
A0A7S2W886_9STRA	1.280e-43	65.69	Dynein light chain n=1 Tax=Rhizochromulina marina ...	[more]
A0A7S1TPD3_9STRA	3.790e-43	64.29	Dynein light chain n=1 Tax=Phaeomonas parva TaxID=...	[more]
A0A7S1CI82_9STRA	2.850e-38	58.25	Dynein light chain n=1 Tax=Bicosoecida sp. CB-2014...	[more]
H3GHN7_PHYRM	4.280e-33	58.65	Dynein light chain n=21 Tax=Oomycota TaxID=4762 Re...	[more]
A0A5D6XID8_9STRA	4.280e-33	57.69	Dynein light chain n=1 Tax=Pythium brassicum TaxID...	[more]
A0A7S2WLS4_9STRA	1.790e-32	53.92	Dynein light chain n=1 Tax=Eucampia antarctica Tax...	[more]
K3WRF9_GLOUD	7.070e-32	56.73	Dynein light chain n=1 Tax=Globisporangium ultimum...	[more]
A0A1V9ZER7_9STRA	2.020e-31	53.85	Dynein light chain n=4 Tax=Saprolegniaceae TaxID=4...	[more]

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Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E-siliculosus-1a_M_contig95:466439..468289+
coding sequence from alignment at E-siliculosus-1a_M_contig95:466439..468289+

protein sequence of mRNA_E-siliculosus-1a_M_contig95.17516.1

>prot_E-siliculosus-1a_M_contig95.17516.1 ID=prot_E-siliculosus-1a_M_contig95.17516.1|Name=mRNA_E-siliculosus-1a_M_contig95.17516.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=103bp
MGEMVPDWAQMWGAKVKMPTDMRDDMLRDAIETCRDALDHCADFEAEGLA
AAEKIKKHFDARWDPSWHVIIGRNFGSFVTHETTCFVYFYLADKAIMMYK
AG*

mRNA from alignment at E-siliculosus-1a_M_contig95:466439..468289+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E-siliculosus-1a_M_contig95.17516.1 ID=mRNA_E-siliculosus-1a_M_contig95.17516.1|Name=mRNA_E-siliculosus-1a_M_contig95.17516.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=1851bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:466439..468289+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGGAGAAATGGTGCCTGACTGGGCGCAAATGTGGGGGGCTAAGGTCAA
GATGCCAACAGACATGCGCGATGACATGCTGAGAGATGCCATCGAGACAT
GCAGGGATGCCTTGGATCACTGTGCGGATTTCGAAGCAGAAGGTACTTCA
AAATACTGCACACCAGACAGGCCGCTTATCGATTGGGTTGCATAGCAATC
AACGCTACAGAAAACGGACGTAGACGTTGATATTGCCAGTAGCGTGAGGT
CATGCGTCATACAACTTCACGATATAGCAAACGTAAAAGGTTCTTCTGGA
CTGAAATAAGCGTTTGGTTGACACTACATGTTATCGCGTGGGCACGAAAT
TGCTTCCAGGAAGAGCAGAAGTAATCCTCTGCCTAAGCTTTTAGACTATC
GATGATGAGAGAGAGAGTCTGAAGACCGCCAAAGTACTCGTTATCCCTTT
TAATTTTCTGTTTTTATGTGAGAAGAGAATTGTTCCTGAAGCGCTTGCGA
GAGACTCCAACGGTATTTTCCCTTTCCAAACAATTGAGTTGCACGCTTTC
AAAACAGGACTAGCCGCAGCAGAGAAGATCAAAAAGCATTTCGACGCGCG
GTGGGACCCCAGCTGGCATGTCATAATCGGTCGAAATTTCGGCTCTTTCG
TGACGCACGAAACAACGTGAGTCTTCTCTGTTGCAGTCTGTCTAGATACG
GAACGGAAACGCCTACACTGTAGCTAGCAACAGGTGTACAATCAATGACG
CGTGCAAGCATCTATTGAGGGGGGCAAGACTTGTACTGCGTAGATCTTTC
TATGTAGGGAACGCTCGTTGGTTCGCTGCGGAGAGTATCGCCATCATGGA
GGCAGCGTGATTGACGCCATTGACGCCATTGACCAACTACCAACTTTACG
GCGATGACCGCATCCTACCTCACGACAACCTGGATCCACTTGGTATGGCT
CCAATGCTGAGGATAGGTTTGTTTCGCCAAAGGTGTTATCGTCTTGGCTC
CCGTCACCGCCTCCACTGTTTTTCACGTGAAAGGGGCTTCATGTCATACA
ATCCGTAGTTCGAACAGAAGCGTACGGGAGACATGATTTTAGACGCGTTG
CTTTTACTCTTCAACGCAAAAAAGACTACAGTAGCAGCATATTTCCGGAC
ACGTTACCACCTCCCGTGCATCTCCCTCCCTCCTTCTCCCTCGGGAGGAC
GAAAACTAGGATGGCCTTTTGATTGCGTTGTGCCCTGATCGTGTATGGTT
CTTCCCGTGGTATATCTCACTCGGGTCTTTCGGTTTGAGGATCTGGCGGG
TGGTGCATGCGACACAGAGCCCTTGCTAGACACTGAGCTCCACTGGGCGA
CGACACAACATCGTATACCTACTCAACAGATGTTCGAACATGTATTTTAG
GCCCTGAAGCGGCGTGACATCTTCATCTTTCCACAGGGGCAGAGAAACTG
GTATCCTGGTACCGTACCGAAAGGATTGGTTTGGTTTGGTTGCCATCCAG
GCTACTGGGACGACGTCCCTGAAACATATTCAGGACGAAGAGTAAATAGC
TGGCAGTTCTGGGGTCTTCAGCTATTGCCTTTCTTCCCGCCATTGACCTG
GATTGTTTTTTCTCGGGGCTTGCTTGTCCTGAACGAGGAGAGCTTAACCA
CTATGTTCGCCTAATCAAAACGGTAATTTGATGGTTGTGCTAAGGCACGA
CCTCCCCCCGCGCGCGCGCCACTCATTCCGTTTTCCTCTTGACTCCCGCG
CTTGCTATGAATCTGGCATCTCCATCTCTCCCTCGCACGAAAGGTGTTTC
GTTTACTTCTACTTGGCAGACAAAGCGATCATGATGTACAAAGCCGGCTG
A

Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig95:466439..468289+

>mRNA_E-siliculosus-1a_M_contig95.17516.1 ID=mRNA_E-siliculosus-1a_M_contig95.17516.1|Name=mRNA_E-siliculosus-1a_M_contig95.17516.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=618bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:466439..468289+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGGAGAAATGGTGCCTGACTGGGCGCAAATGTGGGGGGCTAAGGTCAA
GATGCCAACAGACATGCGCGATGACATGCTGAGAGATGCCATCGAGACAT
GCAGGGATGCCTTGGATCACTGTGCGGATTTCGAAGCAGAAGATGGGAGA
AATGGTGCCTGACTGGGCGCAAATGTGGGGGGCTAAGGTCAAGATGCCAA
CAGACATGCGCGATGACATGCTGAGAGATGCCATCGAGACATGCAGGGAT
GCCTTGGATCACTGTGCGGATTTCGAAGCAGAAGGACTAGCCGCAGCAGA
GAAGATCAAAAAGCATTTCGACGCGCGGTGGGACCCCAGCTGGCATGTCA
TAATCGGTCGAAATTTCGGCTCTTTCGTGACGCACGAAACAACGACTAGC
CGCAGCAGAGAAGATCAAAAAGCATTTCGACGCGCGGTGGGACCCCAGCT
GGCATGTCATAATCGGTCGAAATTTCGGCTCTTTCGTGACGCACGAAACA
ACGTGTTTCGTTTACTTCTACTTGGCAGACAAAGCGATCATGATGTACAA
AGCCGGCTGAGTGTTTCGTTTACTTCTACTTGGCAGACAAAGCGATCATG
ATGTACAAAGCCGGCTGA