mRNA_E-siliculosus-1a_M_contig95.17515.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig95.17515.1 vs. uniprot
Match: D7G1V8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1V8_ECTSI) HSP 1 Score: 369 bits (948), Expect = 1.210e-125 Identity = 187/199 (93.97%), Postives = 194/199 (97.49%), Query Frame = 1 Query: 379 MTDPDKLREYRRNWTVEDDCVRPVRFKTDAVTSANTGVPARFRMSEMRKLPGTPKAVERLRAKALEGGQMGIVRLHRALQRRLQANHTESHTSDVAQHRLLQPNDLMEGLSGAGLTPLTAFDAKKVVEFCTKGGDGGASVTDVLEELRFGGPVDDDYRVQAVKGAFRELDEGGSGLISARGLERRYDAAAASTRRVRCV 975
MTDPDKLREYRRNWTVEDDCVRPVRFKTDAVTSANTGVPARFRMSEMRKLPGTPKAVERLRAKALEGGQMGIVRLH+ALQRRLQANHTE TSDVAQHRLLQPNDLMEGLSGAGLTPLTAFDAKKV+EFCTKGGD GAS+TDVLEELRFGGPVDDDYRVQAVKGAFRELDEGGSGLISARGL+RRYDAAAASTR ++ +
Sbjct: 1 MTDPDKLREYRRNWTVEDDCVRPVRFKTDAVTSANTGVPARFRMSEMRKLPGTPKAVERLRAKALEGGQMGIVRLHQALQRRLQANHTEPRTSDVAQHRLLQPNDLMEGLSGAGLTPLTAFDAKKVIEFCTKGGDDGASITDVLEELRFGGPVDDDYRVQAVKGAFRELDEGGSGLISARGLKRRYDAAAASTRTLKAM 199
BLAST of mRNA_E-siliculosus-1a_M_contig95.17515.1 vs. uniprot
Match: A0A482S5Q3_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S5Q3_9ARCH) HSP 1 Score: 77.4 bits (189), Expect = 1.550e-12 Identity = 58/161 (36.02%), Postives = 79/161 (49.07%), Query Frame = 1 Query: 22 GSNSLRGGKKKYGPKTKCGNWVE-LNKEPGQMLPSGFPHAMYRTDAHQQMLEGVLQKPTRFGAGLPP------PEDPSIDYTRVINYDKRQGDSHWAGITTTEFVAPEKCGEKSREFASSFKLTGGMTDPDKLREYRRNWTVEDDCVRPVRFKTDAVTSAN 483
G N LRGG K + PKT G W++ L G GF + Y T+A Q +LQ FGAGLP P+ P YT K ++ WA T T+ ++ +S+++ L M DKL EYRRNWT+E D +R VRF T+ S++
Sbjct: 12 GQNGLRGGIKTFAPKTITGPWLDALGGTAG--YKRGFTTSEYETEAQHQQKGALLQNEPEFGAGLPDELQLTRPDSP-FKYT----VSKYNNENVWA--TNTKLMSQVLL-TQSKDYEVPTALKPRMP-ADKLEEYRRNWTIESDAMRDVRFATETRISSS 161 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig95.17515.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig95.17515.1 >prot_E-siliculosus-1a_M_contig95.17515.1 ID=prot_E-siliculosus-1a_M_contig95.17515.1|Name=mRNA_E-siliculosus-1a_M_contig95.17515.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=397bp MLASLQGGSNSLRGGKKKYGPKTKCGNWVELNKEPGQMLPSGFPHAMYRTback to top mRNA from alignment at E-siliculosus-1a_M_contig95:456896..464364- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig95.17515.1 ID=mRNA_E-siliculosus-1a_M_contig95.17515.1|Name=mRNA_E-siliculosus-1a_M_contig95.17515.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=7469bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:456896..464364- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig95:456896..464364- >mRNA_E-siliculosus-1a_M_contig95.17515.1 ID=mRNA_E-siliculosus-1a_M_contig95.17515.1|Name=mRNA_E-siliculosus-1a_M_contig95.17515.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=2382bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:456896..464364- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |