mRNA_E-siliculosus-1a_M_contig95.17514.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig95.17514.1 vs. uniprot
Match: D7G1V7_ECTSI (Myb-like DNA-binding domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1V7_ECTSI) HSP 1 Score: 639 bits (1649), Expect = 2.040e-227 Identity = 405/455 (89.01%), Postives = 406/455 (89.23%), Query Frame = 1 Query: 1 MALDNSIVGESRRSENRRVWSREEDDAIRVLVKRHGTRSWATIEEHLAADYSIVGRSGKQCRERWHNHLDPSIKKGTWTPEEEALITKTRAEIGNRWSEIAKRLPGRTDNQVKNFWYSSMRRNVRTLSREVSGPPQRSSLPAIEIDQLDHRFLEGLLQPTALNMSPERETDNXXXXXXXXXXXXXXXXXXXXXDGRYMKAAKLAALEVLSSSSTKESKRNVSHAEQRRLIEVAHSVDRACDKDGTVDENLISAAITIVSTNAAETPNDVIMAAIKLASVARDGFVEKFKQRLMETGGVHCTTTKHKPAPAPPANRNASTISQXXXXXXXXXXXXXXXKKRPLSIDAANGSAQGAVAPSHSPXXXXXXXXXXXXXFPMVXXXXXXXXXXXXXXXXXXXXXXXXXXXAPSAIGLEPGEGDQHGYDKWAMPPVPDSMRGSFGLPRGGGGPRGSGSGVS 1365 MALDNSIV ESRRSENRRVWSREEDDAIRVLVKRHGTRSWATIEEHLAADYSIVGRSGKQCRERWHNHLDPSIKKGTWTPEEEALITKTRAEIGNRWSEIAKRLPGRTDNQVKNFWYSSMRRNVRTLSREVSGPPQRSSLPAIEIDQLDHRFLEGLLQPTALNMSPERETD XXXXXXXXXXXXXXXXXXX RNVSHAEQRRLIEVAHSVDRACDKDGTVDENLISAAITIVSTNAAETPNDVIMAAIKLASVARDGFVEKFKQRLMETGGVHCTTTKHKPAPAPPA RNASTISQ KKRPLSIDAANGSAQ AVAPSHSPXXXXXXXXXXXXX PM XXXXXXXXXXXXXXXXXXXXXXXXXXXAPSAIGLEPGEGDQ+GYDKWAMPPVPDSMRGSF LPRGGGGPRGSGSGVS Sbjct: 1 MALDNSIVSESRRSENRRVWSREEDDAIRVLVKRHGTRSWATIEEHLAADYSIVGRSGKQCRERWHNHLDPSIKKGTWTPEEEALITKTRAEIGNRWSEIAKRLPGRTDNQVKNFWYSSMRRNVRTLSREVSGPPQRSSLPAIEIDQLDHRFLEGLLQPTALNMSPERETDKTNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------RNVSHAEQRRLIEVAHSVDRACDKDGTVDENLISAAITIVSTNAAETPNDVIMAAIKLASVARDGFVEKFKQRLMETGGVHCTTTKHKPAPAPPAKRNASTISQKSSAAADGSGGSG--KKRPLSIDAANGSAQDAVAPSHSPXXXXXXXXXXXXXXPMXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPSAIGLEPGEGDQNGYDKWAMPPVPDSMRGSFCLPRGGGGPRGSGSGVS 444
BLAST of mRNA_E-siliculosus-1a_M_contig95.17514.1 vs. uniprot
Match: A0A7S1XJ32_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XJ32_9STRA) HSP 1 Score: 187 bits (476), Expect = 7.590e-53 Identity = 82/124 (66.13%), Postives = 99/124 (79.84%), Query Frame = 1 Query: 25 GESRRSENRRVWSREEDDAIRVLVKRHGTRSWATIEEHLAADYSIVGRSGKQCRERWHNHLDPSIKKGTWTPEEEALITKTRAEIGNRWSEIAKRLPGRTDNQVKNFWYSSMRRNVRTLSREVS 396 G+ +RRVW++EED AIR LV +HGTRSW+ I E + D++I GR+GKQCRERWHNHLDP+I KG WTPEEE ++ + E+GN+WSEIAKRLPGRTDN VKN WYS MRRNVR L+REVS Sbjct: 45 GKKETKNDRRVWTKEEDHAIRELVAKHGTRSWSVIAERIVTDFNITGRTGKQCRERWHNHLDPTINKGAWTPEEEQIMVEAHKELGNKWSEIAKRLPGRTDNHVKNHWYSFMRRNVRRLNREVS 168
BLAST of mRNA_E-siliculosus-1a_M_contig95.17514.1 vs. uniprot
Match: F0YL55_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YL55_AURAN) HSP 1 Score: 174 bits (441), Expect = 1.790e-49 Identity = 77/119 (64.71%), Postives = 94/119 (78.99%), Query Frame = 1 Query: 40 SENRRVWSREEDDAIRVLVKRHGTRSWATIEEHLAADYSIVGRSGKQCRERWHNHLDPSIKKGTWTPEEEALITKTRAEIGNRWSEIAKRLPGRTDNQVKNFWYSSMRRNVRTLSREVS 396 S +RRVWS++ED AI+ LV R+GTRSW+ I EH+ +DY+I GR+GKQCRERWHNHLDP I K WT +EE ++ +GN+WSEIAK LPGRTDN VKN WYS MRRNVR L+REV+ Sbjct: 3 SGDRRVWSQQEDSAIKDLVMRYGTRSWSVIAEHIVSDYNIEGRTGKQCRERWHNHLDPHINKDAWTADEERVMADAHKSLGNKWSEIAKLLPGRTDNHVKNHWYSFMRRNVRRLNREVN 121
BLAST of mRNA_E-siliculosus-1a_M_contig95.17514.1 vs. uniprot
Match: F0YL28_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YL28_AURAN) HSP 1 Score: 165 bits (418), Expect = 4.020e-45 Identity = 75/118 (63.56%), Postives = 92/118 (77.97%), Query Frame = 1 Query: 46 NRRVWSREEDDAIRVLVKRHGTRSWATIEEHLAADYSIVGRSGKQCRERWHNHLDPSIKKGTWTPEEEALITKTRAEIG-NRWSEIAKRLPGRTDNQVKNFWYSSMRRNVRTLSREVS 396 +RRVW+ +ED+AIR LV ++GTRSW+ I EH+ D++I GR+GKQCRERWHNHLDP I K WT EEE ++ +G N+WSEIAK LPGRTDN VKN WYS MRRNVR L+REV+ Sbjct: 6 DRRVWTVQEDNAIRQLVMKYGTRSWSVIAEHIVQDFNIDGRTGKQCRERWHNHLDPHINKEAWTEEEERIMADAHKTLGCNKWSEIAKLLPGRTDNHVKNHWYSFMRRNVRRLNREVN 123
BLAST of mRNA_E-siliculosus-1a_M_contig95.17514.1 vs. uniprot
Match: A0A6H5KLV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLV5_9PHAE) HSP 1 Score: 168 bits (426), Expect = 1.380e-44 Identity = 153/339 (45.13%), Postives = 155/339 (45.72%), Query Frame = 1 Query: 349 YSSMRRNVRTLSREVSGPPQRSSLPAIEIDQLDHRFLEGLLQPTALNMSPERETDNXXXXXXXXXXXXXXXXXXXXXDG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RYMKAAKLAALEVLSSSSTKESKRNVSHAEQRRLIEVAHSVDRACDKDGTVDENLISAAITIVSTNAAETPNDVIMAAIKLA 831 YSSMRRNVRTLSREVSGPPQRSSLPAI+IDQLDHRFLEGLLQPTALNMSPERE D XXXXXXXXXXXXXXXXXXXX RYMKAAKLAALEVLSSSSTKE+KRNVSHAEQRRLIEVAHSVDRAC KDGTVDENLISAAITIVSTNAAETPNDVIMAAIKLA Sbjct: 4 YSSMRRNVRTLSREVSGPPQRSSLPAIDIDQLDHRFLEGLLQPTALNMSPEREADKNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDNRPERSGDRGNGYVNGFDNREGGVLKKLRRCSNRGVGXXXXXXXXXXXXXXXXXXXXXXXXXALIAKRQSKPQPAGPAKKHKGPYKAVRARKATGLDELERYMKAAKLAALEVLSSSSTKEAKRNVSHAEQRRLIEVAHSVDRACAKDGTVDENLISAAITIVSTNAAETPNDVIMAAIKLA 342
BLAST of mRNA_E-siliculosus-1a_M_contig95.17514.1 vs. uniprot
Match: A0A2R5FYY8_9STRA (Transcription factor MYB118 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5FYY8_9STRA) HSP 1 Score: 174 bits (441), Expect = 4.270e-44 Identity = 80/128 (62.50%), Postives = 96/128 (75.00%), Query Frame = 1 Query: 40 SENRRVWSREEDDAIRVLVKRHGTRSWATIEEHLAADYSIVGRSGKQCRERWHNHLDPSIKKGTWTPEEEALITKTRAEIGNRWSEIAKRLPGRTDNQVKNFWYSSMRRNVRTLSREV-SGPPQRSSL 420 S +RR WS+ EDDAIR LVK HGT+ W+TI L +DY I R+GKQCRERWHNHLDP+I+K WT EEEA++ K +GNRWSEI+K LPGRTDN +KN WYS MRRNVR L++EV G P + L Sbjct: 11 SGDRRAWSQREDDAIRTLVKEHGTKRWSTIATRLISDYRIDCRTGKQCRERWHNHLDPTIRKDPWTAEEEAIMAKAHQRLGNRWSEISKLLPGRTDNAIKNHWYSMMRRNVRRLNKEVLDGMPMSAPL 138
BLAST of mRNA_E-siliculosus-1a_M_contig95.17514.1 vs. uniprot
Match: A0A7S2SND5_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2SND5_9STRA) HSP 1 Score: 160 bits (405), Expect = 5.070e-40 Identity = 71/116 (61.21%), Postives = 87/116 (75.00%), Query Frame = 1 Query: 46 NRRVWSREEDDAIRVLVKRHGTRSWATIEEHLAADYSIVGRSGKQCRERWHNHLDPSIKKGTWTPEEEALITKTRAEIGNRWSEIAKRLPGRTDNQVKNFWYSSMRRNVRTLSREV 393 +RRVWS EED+AIR LV GT+ W+ I L Y+I GR+GKQCRERWHNHLDP IKK W+ EE + + ++GNRWSEI+K LPGRTDN +KN WYS+MRRNVR L++EV Sbjct: 42 DRRVWSNEEDEAIRTLVGEQGTKKWSWIATELRQRYNIDGRTGKQCRERWHNHLDPEIKKCPWSESEEQALAEAHQKLGNRWSEISKLLPGRTDNAIKNHWYSTMRRNVRRLTKEV 157
BLAST of mRNA_E-siliculosus-1a_M_contig95.17514.1 vs. uniprot
Match: A0A7S2ST59_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2ST59_9STRA) HSP 1 Score: 155 bits (391), Expect = 3.860e-39 Identity = 70/116 (60.34%), Postives = 87/116 (75.00%), Query Frame = 1 Query: 49 RRVWSREEDDAIRVLVKRHGTRSWATIEEHLAADYSIVGRSGKQCRERWHNHLDPSIKKGTWTPEEEALITKTRAEIGNRWSEIAKRLPGRTDNQVKNFWYSSMRRNVRTLSREVS 396 RR WSR+EDDAI LV RHGT+ WA I + L + S V RSGKQCR RW NHLDP+IKK W+ EE +I + +GN+W+EIAK LPGRTDN +KN WYS+MRRN+R L++E+S Sbjct: 39 RRAWSRKEDDAIVRLVNRHGTKRWAVIAQELNGEISGVFRSGKQCRTRWLNHLDPAIKKEPWSEHEERIIYDAQQRLGNKWAEIAKLLPGRTDNAIKNHWYSTMRRNMRRLAKEIS 154
BLAST of mRNA_E-siliculosus-1a_M_contig95.17514.1 vs. uniprot
Match: A0A835ZL73_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZL73_9STRA) HSP 1 Score: 158 bits (400), Expect = 1.000e-38 Identity = 71/117 (60.68%), Postives = 87/117 (74.36%), Query Frame = 1 Query: 49 RRVWSREEDDAIRVLVKRHGTRSWATIEEHLAADYSIVGRSGKQCRERWHNHLDPSIKKGTWTPEEEALITKTRAEIGNRWSEIAKRLPGRTDNQVKNFWYSSMRRNVRTLSREVSG 399 RR WS +ED AIR LV + G ++W+ + + +Y+I GR+ KQ ERWHNHL P I K WTP+EE ++ + AE+GNRWSEIAKRLPGRTDN VKN WYSSMRRNVR L+REV G Sbjct: 38 RRSWSTKEDAAIRSLVDKLGMQAWSQVAAAMETEYAIFGRTSKQIWERWHNHLSPGISKAPWTPQEERVMAQAHAELGNRWSEIAKRLPGRTDNHVKNHWYSSMRRNVRRLTREVGG 154
BLAST of mRNA_E-siliculosus-1a_M_contig95.17514.1 vs. uniprot
Match: A0A7S2G8M0_9STRA (Hypothetical protein (Fragment) n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G8M0_9STRA) HSP 1 Score: 151 bits (381), Expect = 5.460e-38 Identity = 68/116 (58.62%), Postives = 87/116 (75.00%), Query Frame = 1 Query: 49 RRVWSREEDDAIRVLVKRHGTRSWATIEEHLAADYSIVGRSGKQCRERWHNHLDPSIKKGTWTPEEEALITKTRAEIGNRWSEIAKRLPGRTDNQVKNFWYSSMRRNVRTLSREVS 396 RR W+R+EDDAI LVKRHGT+ WA I + L + V RSGKQCR RW NHLDP+IKK W+ EE +I + +GN+W+EIAK LPGRTDN +KN WYS+MRRN+R L++E++ Sbjct: 50 RRAWTRKEDDAIVRLVKRHGTKRWACIAQELNTEIPGVFRSGKQCRTRWLNHLDPAIKKEPWSDTEEHIIYDAQHRLGNKWAEIAKLLPGRTDNAIKNHWYSTMRRNMRRLAKEIA 165 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig95.17514.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig95.17514.1 >prot_E-siliculosus-1a_M_contig95.17514.1 ID=prot_E-siliculosus-1a_M_contig95.17514.1|Name=mRNA_E-siliculosus-1a_M_contig95.17514.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=456bp MALDNSIVGESRRSENRRVWSREEDDAIRVLVKRHGTRSWATIEEHLAADback to top mRNA from alignment at E-siliculosus-1a_M_contig95:447744..454550- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig95.17514.1 ID=mRNA_E-siliculosus-1a_M_contig95.17514.1|Name=mRNA_E-siliculosus-1a_M_contig95.17514.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=6807bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:447744..454550- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig95:447744..454550- >mRNA_E-siliculosus-1a_M_contig95.17514.1 ID=mRNA_E-siliculosus-1a_M_contig95.17514.1|Name=mRNA_E-siliculosus-1a_M_contig95.17514.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=2736bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:447744..454550- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |