Homology
BLAST of mRNA_E-siliculosus-1a_M_contig95.17510.1 vs. uniprot
Match:
D7G1V2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1V2_ECTSI)
HSP 1 Score: 217 bits (553), Expect = 2.170e-66
Identity = 113/123 (91.87%), Postives = 117/123 (95.12%), Query Frame = 3
Query: 210 SDTVYDVMGFLGGAVMAAALVPQVYRVTVRKKAADISHVYQAVFVTGMVMFLVFYGYYELWELFFPTLASMMLQIYLAVLKLRLERCPRRHTAATPSTVASETPGEGATLDNGSSESSPLLKS 578
SDTVYDVMGFLGG VMAA+LVPQVYRVTVRKKAADISH YQ VFVTG+VMFLVFYGYYELWELFFP LASMMLQIYLAVLK+RLERCPRRHTAA PSTVASETPGEGATLDNGSSE +PLLKS
Sbjct: 2 SDTVYDVMGFLGGCVMAASLVPQVYRVTVRKKAADISHTYQVVFVTGIVMFLVFYGYYELWELFFPALASMMLQIYLAVLKIRLERCPRRHTAAAPSTVASETPGEGATLDNGSSERTPLLKS 124
BLAST of mRNA_E-siliculosus-1a_M_contig95.17510.1 vs. uniprot
Match:
A0A6H5KU65_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU65_9PHAE)
HSP 1 Score: 116 bits (291), Expect = 9.140e-28
Identity = 65/127 (51.18%), Postives = 85/127 (66.93%), Query Frame = 3
Query: 204 MTSDTVYDVMGFLGGAVMAAALVPQVYRVTVRKKAADISHVYQAVFVTGMVMFLVFYGYYELWELFFPTLASMMLQIYLAVLKLRLERCPRRHTAATP--STVASETPGEGATLDNGSSESSPLLKS 578
MTSD Y++MG GG ++A A PQ+ RV RK++ADIS+ + VF+ GMVMFLV+YGYYELWELFFP+L SM I L K+R+E P R AA S +TPG+G + N SS++ PL+ S
Sbjct: 1 MTSDVPYNLMGVCGGLIVACAYAPQLARVIRRKQSADISYTHLMVFMGGMVMFLVYYGYYELWELFFPSLISMSFVILLLAAKIRMEEFPLRPRAAAAGASVAVGDTPGDGERMTNTSSDAQPLMSS 127
BLAST of mRNA_E-siliculosus-1a_M_contig95.17510.1 vs. uniprot
Match:
D7G1V3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1V3_ECTSI)
HSP 1 Score: 116 bits (290), Expect = 1.270e-27
Identity = 66/127 (51.97%), Postives = 85/127 (66.93%), Query Frame = 3
Query: 204 MTSDTVYDVMGFLGGAVMAAALVPQVYRVTVRKKAADISHVYQAVFVTGMVMFLVFYGYYELWELFFPTLASMMLQIYLAVLKLRLERCPRRHTAATP--STVASETPGEGATLDNGSSESSPLLKS 578
M SD Y++MG GG ++A A VPQ+ RV RK++ADIS+ + VFV G+VMFL +YGYYELWE+FFP L SM I L LK+RLE P R AA P S V +T G+G + N SS++ PL+ S
Sbjct: 1 MASDVPYNLMGASGGLIVAFAFVPQLARVIRRKQSADISYAHLMVFVGGLVMFLAYYGYYELWEVFFPALLSMSFAILLLALKIRLEEFPLRPRAAVPGASVVVGDTSGDGERMANTSSDAQPLMSS 127
BLAST of mRNA_E-siliculosus-1a_M_contig95.17510.1 vs. uniprot
Match:
D8LCW9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCW9_ECTSI)
HSP 1 Score: 68.9 bits (167), Expect = 1.300e-9
Identity = 32/83 (38.55%), Postives = 55/83 (66.27%), Query Frame = 3
Query: 222 YDVMGFLGGAVMAAALVPQVYRVTVRKKAADISHVYQAVFVTGMVMFLVFYGYYELWELFFPTLASMMLQIYLAVLKLRLERC 470
++++GF+GG V+A AL+PQ+Y RK ADIS+++QAV+ G++ +++Y ++ LW +F+P +YL LK+ E C
Sbjct: 8 FNIIGFVGGVVLATALLPQIYLAHSRKSTADISYLWQAVYTVGLLTLMIYYFHFRLWAVFYPMAFEFSSLMYLTGLKIYYEVC 90
BLAST of mRNA_E-siliculosus-1a_M_contig95.17510.1 vs. uniprot
Match:
A0A1E7FTB5_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FTB5_9STRA)
HSP 1 Score: 59.7 bits (143), Expect = 2.430e-7
Identity = 29/81 (35.80%), Postives = 50/81 (61.73%), Query Frame = 3
Query: 225 DVMGFLGGAVMAAALVPQVYRVTVRKKAADISHVYQAVFVTGMVMFLVFYGYYELWELFFPTLASMMLQIYLAVLKLRLER 467
D++GF+GG ++ +L+PQVY+ K A DIS+ YQA+++ G + L++ LW ++ P + L I L V+K+ +R
Sbjct: 7 DIIGFVGGTTISLSLIPQVYKTFHSKSAGDISYYYQAIYIVGCTLTLIYAAALRLWPVYIPITLELTLIISLTVMKVIFDR 87
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig95.17510.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90 )
Total hits: 5
0 1 Expect = 2.17e-66 / Id = 91.87 Expect = 9.14e-28 / Id = 51.18 Expect = 1.27e-27 / Id = 51.97 Expect = 1.30e-9 / Id = 38.55 Expect = 2.43e-7 / Id = 35.80 Sequence D7G1V2_ECTSI A0A6H5KU65_9PHAE D7G1V3_ECTSI D8LCW9_ECTSI A0A1E7FTB5_9STRA back to top
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622936518.5190492-UTR-E-siliculosus-1a_M_contig95:415573..415776 1622936518.5190492-UTR-E-siliculosus-1a_M_contig95:415573..415776 Ectocarpus siliculosus Ec864m_EcPH12_78m male UTR E-siliculosus-1a_M_contig95 415574..415776 + 1696251114.0727189-UTR-E-siliculosus-1a_M_contig95:415573..415776 1696251114.0727189-UTR-E-siliculosus-1a_M_contig95:415573..415776 Ectocarpus siliculosus Ec864m_EcPH12_78m male UTR E-siliculosus-1a_M_contig95 415574..415776 + 1622936518.6746655-UTR-E-siliculosus-1a_M_contig95:419178..419936 1622936518.6746655-UTR-E-siliculosus-1a_M_contig95:419178..419936 Ectocarpus siliculosus Ec864m_EcPH12_78m male UTR E-siliculosus-1a_M_contig95 419179..419936 + 1696251114.1439278-UTR-E-siliculosus-1a_M_contig95:419178..419936 1696251114.1439278-UTR-E-siliculosus-1a_M_contig95:419178..419936 Ectocarpus siliculosus Ec864m_EcPH12_78m male UTR E-siliculosus-1a_M_contig95 419179..419936 +
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622936518.6274214-CDS-E-siliculosus-1a_M_contig95:415776..415905 1622936518.6274214-CDS-E-siliculosus-1a_M_contig95:415776..415905 Ectocarpus siliculosus Ec864m_EcPH12_78m male CDS E-siliculosus-1a_M_contig95 415777..415905 + 1696251114.0857737-CDS-E-siliculosus-1a_M_contig95:415776..415905 1696251114.0857737-CDS-E-siliculosus-1a_M_contig95:415776..415905 Ectocarpus siliculosus Ec864m_EcPH12_78m male CDS E-siliculosus-1a_M_contig95 415777..415905 + 1622936518.6411822-CDS-E-siliculosus-1a_M_contig95:418379..418433 1622936518.6411822-CDS-E-siliculosus-1a_M_contig95:418379..418433 Ectocarpus siliculosus Ec864m_EcPH12_78m male CDS E-siliculosus-1a_M_contig95 418380..418433 + 1696251114.1015801-CDS-E-siliculosus-1a_M_contig95:418379..418433 1696251114.1015801-CDS-E-siliculosus-1a_M_contig95:418379..418433 Ectocarpus siliculosus Ec864m_EcPH12_78m male CDS E-siliculosus-1a_M_contig95 418380..418433 + 1622936518.6563742-CDS-E-siliculosus-1a_M_contig95:418980..419178 1622936518.6563742-CDS-E-siliculosus-1a_M_contig95:418980..419178 Ectocarpus siliculosus Ec864m_EcPH12_78m male CDS E-siliculosus-1a_M_contig95 418981..419178 + 1696251114.1284745-CDS-E-siliculosus-1a_M_contig95:418980..419178 1696251114.1284745-CDS-E-siliculosus-1a_M_contig95:418980..419178 Ectocarpus siliculosus Ec864m_EcPH12_78m male CDS E-siliculosus-1a_M_contig95 418981..419178 +
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig95.17510.1
>prot_E-siliculosus-1a_M_contig95.17510.1 ID=prot_E-siliculosus-1a_M_contig95.17510.1|Name=mRNA_E-siliculosus-1a_M_contig95.17510.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=127bp
MTSDTVYDVMGFLGGAVMAAALVPQVYRVTVRKKAADISHVYQAVFVTGM back to top mRNA from alignment at E-siliculosus-1a_M_contig95:415574..419936+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig95.17510.1 ID=mRNA_E-siliculosus-1a_M_contig95.17510.1|Name=mRNA_E-siliculosus-1a_M_contig95.17510.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=4363bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:415574..419936+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)GAACCATGGAACCATGATGGCGGCGCGTCGCCTACCGTGCCGTGCAAGGC
GGGAGGGTCGTACAATGGCTGCAAGCGAAGGCAGGTGCATCTGTCCTTCT
GGCATCCCTACACGCACAGGCAGACCCACCGGCCGGAGATATAGTCGGCG
CTGCTGCTATTCAAGCAGTACATCTGTCCTTGATCCTCCCACTGGCAATA
GCG ATGACGTCCGATACAGTCTATGACGTGATGGGCTTTCTCGGAGGTGC
GGTCATGGCCGCGGCGTTGGTGCCTCAAGTTTACCGCGTCACCGTGCGAA
AGAAAGCCGCTGATATAAGCCACGTGTACCAG GTGGGTGGGTGTGCTGCC
AACTCCATGTATGATGTCTCCAATAAAAATAGTATCGACCGCGCTCTAAC
CGGCTGACCATTGATTAGAAGTCAAGTGTGTGTATTCGTCGCATCTATTC
TGGCGCCAGTTCACAGGTTTCGGCGTATATCTAATATATATACCAGACGT
ATCCAACCAAGGGGCGCACGAAAAATTATCCCTGCTGTTTAGGGGGGCAG
AAGACGAATTTTGTTGTTGACTGATTTTGAAAACAAACGCCAGAGCACCA
GAAATTGCACAACAGACAACCTAGACCACCAGTAGAAGGCACCGCGAAAA
ACAGAAATCGTTGATTCTCGCACTGGGCGGCAGTAGAGGCTATAATAAAA
CATACATTTCACGCGTCTACCTCCACACGCCTCCTTTGAAATCAAGATAT
TCTAAATTCTAGTCAAAAGAGCCACCACGGAAGGCGCTCAAACAAGGTCA
ATTTTGAGTGTTCGGTGTCGCATATTGTCATCAGTAGAGGACATCATGAA
GAGGCGTCGTGCGTGCTGGCACGTTCAGGTTTGCTACTGGAGCTGAAATA
TCGAAATATCGAAGGTCGCAGCAGCCTCTGAAAGCAGTCCGAAATGTGCG
CCGGAACCAAGCGGCATCCAACCTTTGTCACAGCCGTGCTCGCTGCCACT
GACCCCCATCTCCTGATCTGCGGGTTTACAGCAGTAGCTGATGCCGCTAG
GTGGTGAACTGGCTGTGTGTTGCCGTCACTGTTGCTGCAGCCTGTCTGTG
GTTATTCTACTACATTACAATGCAGATGCAGTGTTGACATGCGAGCTTGT
CACGAAACTCATTTTTTCGTTCTAGACCAAGTAAGGTAAATGAGGACATG
TGGTATTTGTGTTGGTCTGCTGTGTGGGTAGAGGATGGTCTGCTGTACCT
GCTGCTGTTGCTGCAATGTGTGCTGCTGTCCTGCTGTGCTTGTGCTGTAT
GAGGGGGGCCCGCAGGTAGGTCGATTTAACCCCCCCCTCGCTTGGTGATG
TGAGAACCCGGCGTGCTCCCGTCCCGGCTTTGTAGGGCTACGAGGTCAAT
GGTCTAGCGACTACGGCATGCACGACTATGAGTACACCCCCCCCCTCACG
TCAATGGTCAAATGACTACGGCAAGCAACAAATGAGTACGCCCCCCCCCC
CTCCAGTGAGGGGGCTCCGGAACTGAAAAAAACGGAAAATAACTGGGAAC
TTCCAGGGCACCTAACCGCTGAACGTTGTGAATGGTGATAACCGGTACCC
GGTTATCGACATCCCTGTTTTACTGCTGCTGCTGATTTCGAGATTAAATT
AGCTTGATGGAAAACGGAAGGCTGCTGCTTGACACTGCTTCGTGGTTGTA
GGACTTCTAGCAGATAGGCTGTCGGATACGTCATGCAAAGGAGGTCAAGC
TTGATTACCAGAACAAGATCTCTGCAGAGCACCGACTGACGATCTGCTGG
GTTCTGGGGAGGAAGAATGGGCAATCTTCGTCGCACCGGTTTGGTGGTGC
TCCGACAAGAGATGGTCCTGCTACGCAGGCATTTGTCCCGAAAATTTCGT
TGGAGATACCTCACCCTAAGAAAGTGTCCAGTGTTTGGGTTGTTGTTATG
TACTCCGAGTATATATCTCCATCTTCTCTCTCCTTTTTCCGTCTACACCT
ACGTGGTCTTCCGTTCTCTTTTGAGAAAGATTAAGGTTTCCGTGATGGCA
AGGTGATGGCGATGAAAGTAGTCGAATCCGTAGAAAAATGAAGAAGAGCA
CAGGCAGACGTCATAGTCTACCCTTATGCGGAGAAACAGAAATCCAACAA
CAACAGCAGACGTACATGCATACGCCCACAAAACCAGGGACGACAAACAC
GCTAATTAACTGCTGTGTTTTTGTATGGTAGATACGATAAACTGCTGGTA
GCTCCCCCACAAATATACATGCGGGGGGGGTGTTTTTCGTGCAAAAACAT
GATGAAGGGAATAATGCACCTGGCCCCCAGTCGAGAACCTCGTATTTGGG
GCAACCCTATTACTGTAGCGCACCATCTGCTAGTGGAAGCCTTCGGGATA
GGGTTGAAGCCTTCTTCGTACATCATCTATCTCACTCACGGCAGTTTGAT
TATTGTTAAAGGTTGCCCGGCCGCACTCCTTCTACAAAAGCCCGTTTTGT
TTGTTTACGTGCGGTCTGGGACACGCGGTAGTTGAGACACACCTCTATTT
ACTAGTTCTACTTGCGAAGCAATGAAGGCCCACGAGACATGGAGCCGTAT
CCTTCCTACAGAGGGTTGAAGAGGGGGTCGGATACAGCAGGAGTTCGATA
TTGTTGTGGGCGTTTCTGGTTCTTCCCTGGTCGTTAATGAAATATCTAGG
CTATACCCGACCCGCACCCTTCCGGTTATCACGGCGAGGGTTTTACCGAT
CTGCGCTCAGAAAAACTCGTCTTTCCACTCTCTCGTTCGTCTTCCCGGTT
GTTCAGGCGGTTTTCGTGACGGGAATGGTCATGTTTCTCGTGTTCTACGG
GTACTACGAG GTGTGTGGGGCCTTCCTTGTGCCTGTCGATAGCGTGTCGA
GGGCACGTGAGAATTGCGTGGTGCACAAACCATTTTTTCAATATAGGCTA
TGGTTGTTGGTGGGAATGGAGAGGCCTACAAATACATTGCCTTGGCGCGT
GTCAGGAAGCCTGATCTCGTTCCACCCTTTCACTCAAGAATCGCTCACGG
CCTGCTACAACTCTGTGTACCGGCAACATCGATTCCTGAAACGTCCGCTG
GCCGGTGGTATACGTGCCAGCGACATTCGCACCCCGGTTCCCGCCTGCAA
GAGTGCGTATTTTTCTTCCCCCGGTCTTGTTCAGACCTTCTTGTGTACTC
CCCGAGGTCTCGGACCAGATCCGATGGTTGAACCACCGTTCTTGTTGTTT
CCTTCCAACCAACGTGTTTGCTCTGGTGCAAGCGTACTACCGGCACTTCG
ATGGATCGGGCCTGTGCCGACTGCTCCTTTTCCCCCGGCGTTCAGATTTC
TTATTGCAACTCCGCGTCACCTCTTCTCTTGCGACGTTGTGCTGTTCTTG
TCCTCAGCTGTGGGAGTTGTTCTTCCCAACCCTTGCATCCATGATGCTCC
AGATCTACCTGGCCGTCTTGAAGCTCCGCCTGGAACGTTGCCCCCGCCGA
CATACGGCGGCTACGCCCTCGACGGTTGCTAGCGAAACGCCCGGCGAAGG
CGCAACGCTTGACAACGGGTCAAGCGAGAGTAGCCCTCTGCTGAAGTCGG
CATAG TTGCGATGATCGACTTGGGGTTTTCTCGCGCCGCCAATATATAAC
CGAAACCGTTTGTTTTGACAAGCACGAGATAGTCCTTTCGCGGAGGGTGG
TTTCCTTGTCGGGTCGAGAGACTAGCTTTGCTGCCCATACCGATGATTTC
AGGCTTGTAAGAACCACCAGTCATGCTGGTCGATGCGAACTCGAGGGTCC
GGGTGTAAATAGTGCCAAGCTGGCTAAATCTCGCAGCTCACGAGACACGT
CGCAGCGACGAACAGCGGATGAGGAACCCAAACTCGCGCGTCCTTCAAAT
TGTCATGTATACTGTAAATCGTTGCCGGGGTGGGCTCTTTTTTAGGCGTG
TACGGGCAGCGGTACGCAATCGCCGTCGAAGTATAGCGGGTTTTGCGGCG
ATCGACGAGGCGGTGCTATTCCCCGTGAGAGGATGTTGATATGCCGCGAT
AGCTGTCGCGCCCAGAGTTGCATGCGACCGTCGAGTAGCACAGCCAAGTT
GTCTTCATTTGTTTTACCCACGTGCAGCGTGGACATCTGCCACGCGTGAC
ATTTTTTGTGTGGGTGCACGGTTGGTATTTTAGCGGTAGACATGGATTTG
GGTTTCGCGTTTCTTTTGGGCATCATGTCAAATCATGTTGACAATTTTCG
GTAAGACGCCAAATTCTGCGTGTGACCCCTAGGGCTCGTGACCGCTTTCC
TGCGTGTTGTATTTAGTTTTAGTGCATCATGATTATGCTGGACTTGAAAG
CAAACTGCCCAAC back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig95:415574..419936+
>mRNA_E-siliculosus-1a_M_contig95.17510.1 ID=mRNA_E-siliculosus-1a_M_contig95.17510.1|Name=mRNA_E-siliculosus-1a_M_contig95.17510.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=762bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:415574..419936+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male) back to top