mRNA_E-siliculosus-1a_M_contig95.17507.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig95.17507.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE) HSP 1 Score: 144 bits (363), Expect = 1.660e-37 Identity = 71/102 (69.61%), Postives = 82/102 (80.39%), Query Frame = -2 Query: 2 KTAMVVSSMNADRSAGAAVEHDLLSHLHDVLIVTACDKLQRSMYDVSGLKCLLSSRDDLVLNAVRNDMILSAVNKSRYVEDWYADTGTAFHMTDSLACMKDL 307 + ++ S +ADR AAV H + H VLIV+AC+ L MYDVSGLKCLL+SRDDLV++AV NDMIL+AVNKSRYVEDWYADTGTAFHMTDSLACMKDL Sbjct: 151 QNSIAALSEDADRKLDAAVMHAYFARSHKVLIVSACEWLTSMMYDVSGLKCLLTSRDDLVMSAVSNDMILNAVNKSRYVEDWYADTGTAFHMTDSLACMKDL 252
BLAST of mRNA_E-siliculosus-1a_M_contig95.17507.1 vs. uniprot
Match: A0A6H5JBA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA7_9PHAE) HSP 1 Score: 143 bits (360), Expect = 4.200e-37 Identity = 70/102 (68.63%), Postives = 81/102 (79.41%), Query Frame = -2 Query: 2 KTAMVVSSMNADRSAGAAVEHDLLSHLHDVLIVTACDKLQRSMYDVSGLKCLLSSRDDLVLNAVRNDMILSAVNKSRYVEDWYADTGTAFHMTDSLACMKDL 307 + ++ S +ADR AAV H + H V IV+AC+ L MYDVSGLKCLL+SRDDLV++AV NDMIL+AVNKSRYVEDWYADTGTAFHMTDSLACMKDL Sbjct: 444 QNSIAALSEDADRKLDAAVMHAYFARSHKVFIVSACEWLTNMMYDVSGLKCLLTSRDDLVMSAVSNDMILNAVNKSRYVEDWYADTGTAFHMTDSLACMKDL 545
BLAST of mRNA_E-siliculosus-1a_M_contig95.17507.1 vs. uniprot
Match: A0A6H5K3U2_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3U2_9PHAE) HSP 1 Score: 125 bits (313), Expect = 1.450e-32 Identity = 59/83 (71.08%), Postives = 70/83 (84.34%), Query Frame = -2 Query: 2 EHDLLSHLHDVLIVTACDKLQRSMYDVSGLKCLLSSRDDLVLNAVRNDMILSAVNKSRYVEDWYADTGTAFHMTDSLACMKDL 250 + DL +++I+TA D+L MYDVSGLKCL++SRDDLV+ AV +DMIL AVNKSRYVEDWYADTGTAFHMTDSL+CMKDL Sbjct: 167 DDDLFIAYSELVILTAFDQLSSMMYDVSGLKCLMTSRDDLVMRAVSDDMILKAVNKSRYVEDWYADTGTAFHMTDSLSCMKDL 249
BLAST of mRNA_E-siliculosus-1a_M_contig95.17507.1 vs. uniprot
Match: A0A6H5KTY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTY9_9PHAE) HSP 1 Score: 119 bits (297), Expect = 2.480e-31 Identity = 56/83 (67.47%), Postives = 69/83 (83.13%), Query Frame = -2 Query: 2 EHDLLSHLHDVLIVTACDKLQRSMYDVSGLKCLLSSRDDLVLNAVRNDMILSAVNKSRYVEDWYADTGTAFHMTDSLACMKDL 250 + DL +++I+TA D+L MYDVSGLK L++SR+DLV+ A+ +DMIL AVNKSRYVEDWYADTGTAFHMTDSL+CMKDL Sbjct: 51 DDDLFIAYSELVILTAFDQLSSMMYDVSGLKFLMTSREDLVMRAISDDMILKAVNKSRYVEDWYADTGTAFHMTDSLSCMKDL 133
BLAST of mRNA_E-siliculosus-1a_M_contig95.17507.1 vs. uniprot
Match: A0A6H5JV76_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV76_9PHAE) HSP 1 Score: 123 bits (309), Expect = 1.800e-30 Identity = 58/83 (69.88%), Postives = 70/83 (84.34%), Query Frame = -2 Query: 2 EHDLLSHLHDVLIVTACDKLQRSMYDVSGLKCLLSSRDDLVLNAVRNDMILSAVNKSRYVEDWYADTGTAFHMTDSLACMKDL 250 + DL +++I++A D+L MYDVSGLKCL++SRDDLV+ AV +DMIL AVNKSRYVEDWYADTGTAFHMTDSL+CMKDL Sbjct: 51 DDDLFIAYSELVILSAFDQLSSMMYDVSGLKCLMTSRDDLVMRAVSDDMILKAVNKSRYVEDWYADTGTAFHMTDSLSCMKDL 133
BLAST of mRNA_E-siliculosus-1a_M_contig95.17507.1 vs. uniprot
Match: A0A6H5KHE8_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHE8_9PHAE) HSP 1 Score: 61.2 bits (147), Expect = 2.120e-8 Identity = 44/122 (36.07%), Postives = 61/122 (50.00%), Query Frame = -2 Query: 2 LLVRCGRLRWLGGFCSNL*RKTAMVVSSMNADRSAGAAVEHDLLSHLHDVLIVTACDKLQRSMYDVSGLKCLLSSRDDLVLNAVRNDMILSAVNKSRYVEDWYADTGTAFHMTDSLACMKDL 367 LL + W GG AM M + + + +D + HD + + A L D LK + S D +V +++R L+ K R +EDWYADTGTAFHMTDSL+CMKD+ Sbjct: 219 LLSQANSSEWSGGKYI-----AAMYAKIMQKWQESRGSSRNDAVLEHHDTMYLEA---LYTEAED--ELKKYVGS-DRVVRDSIREHSTLT--KKDRCIEDWYADTGTAFHMTDSLSCMKDV 327
BLAST of mRNA_E-siliculosus-1a_M_contig95.17507.1 vs. uniprot
Match: A0A6H5K622_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K622_9PHAE) HSP 1 Score: 61.2 bits (147), Expect = 2.150e-8 Identity = 44/122 (36.07%), Postives = 61/122 (50.00%), Query Frame = -2 Query: 2 LLVRCGRLRWLGGFCSNL*RKTAMVVSSMNADRSAGAAVEHDLLSHLHDVLIVTACDKLQRSMYDVSGLKCLLSSRDDLVLNAVRNDMILSAVNKSRYVEDWYADTGTAFHMTDSLACMKDL 367 LL + W GG AM M + + + +D + HD + + A L D LK + S D +V +++R L+ K R +EDWYADTGTAFHMTDSL+CMKD+ Sbjct: 219 LLSQANSSEWSGGKYI-----AAMYAKIMQKWQESRGSSRNDAVLEHHDTMYLEA---LYTEAED--ELKKYVGS-DRVVRDSIREHSTLT--KKDRCIEDWYADTGTAFHMTDSLSCMKDV 327
BLAST of mRNA_E-siliculosus-1a_M_contig95.17507.1 vs. uniprot
Match: A0A6H5LDZ0_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDZ0_9PHAE) HSP 1 Score: 60.5 bits (145), Expect = 3.920e-8 Identity = 44/122 (36.07%), Postives = 59/122 (48.36%), Query Frame = -2 Query: 2 LLVRCGRLRWLGGFCSNL*RKTAMVVSSMNADRSAGAAVEHDLLSHLHDVLIVTACDKLQRSMYDVSGLKCLLSSRDDLVLNAVRNDMILSAVNKSRYVEDWYADTGTAFHMTDSLACMKDL 367 LL + W GG AM M + +D + HD + + A L D LK + S D +V +++R L+ K R +EDWYADTGTAFHMTDSL+CMKD+ Sbjct: 202 LLSQANSSEWSGGKYI-----AAMYAKIMQKWHECRGSSRNDAVLEHHDTMYLEA---LYTEAED--ELKKYVGS-DRVVRDSIREHSTLT--KKDRCIEDWYADTGTAFHMTDSLSCMKDV 310
BLAST of mRNA_E-siliculosus-1a_M_contig95.17507.1 vs. uniprot
Match: A0A6H5KAX9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAX9_9PHAE) HSP 1 Score: 59.3 bits (142), Expect = 9.280e-8 Identity = 29/67 (43.28%), Postives = 41/67 (61.19%), Query Frame = -2 Query: 2 YDVSGLKCLLSSRDDLVLNAVRNDMIL--------SAVNKSRYVEDWYADTGTAFHMTDSLACMKDL 178 +D L+ L + +D + V +D ++ + K R +EDWYADTGTAFHMTDSL+CMKD+ Sbjct: 334 HDTMYLEALYTEAEDELKKYVGSDRVVRDSIHEHSTLKKKDRCIEDWYADTGTAFHMTDSLSCMKDV 400
BLAST of mRNA_E-siliculosus-1a_M_contig95.17507.1 vs. uniprot
Match: A0A6H5JH25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH25_9PHAE) HSP 1 Score: 57.4 bits (137), Expect = 4.800e-7 Identity = 28/67 (41.79%), Postives = 41/67 (61.19%), Query Frame = -2 Query: 2 YDVSGLKCLLSSRDDLVLNAVRNDMIL--------SAVNKSRYVEDWYADTGTAFHMTDSLACMKDL 178 +D L+ L + +D + V +D ++ + K R +EDWYADTGTAF+MTDSL+CMKD+ Sbjct: 206 HDTMYLEALYTEAEDELKKYVGSDRVVRDSLREHSTLTKKDRCIEDWYADTGTAFNMTDSLSCMKDV 272 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig95.17507.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 12 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig95.17507.1 >prot_E-siliculosus-1a_M_contig95.17507.1 ID=prot_E-siliculosus-1a_M_contig95.17507.1|Name=mRNA_E-siliculosus-1a_M_contig95.17507.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=122bp MQARESVMWKAVPVSAYQSSTYLDLLTALRIMSFLTAFNTRSSRDDSRHFback to top mRNA from alignment at E-siliculosus-1a_M_contig95:395639..396015+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig95.17507.1 ID=mRNA_E-siliculosus-1a_M_contig95.17507.1|Name=mRNA_E-siliculosus-1a_M_contig95.17507.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=377bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:395639..396015+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig95:395639..396015+ >mRNA_E-siliculosus-1a_M_contig95.17507.1 ID=mRNA_E-siliculosus-1a_M_contig95.17507.1|Name=mRNA_E-siliculosus-1a_M_contig95.17507.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=732bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:395639..396015+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |