mRNA_E-siliculosus-1a_M_contig95.17505.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig95.17505.1 vs. uniprot
Match: D7G1U8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1U8_ECTSI) HSP 1 Score: 647 bits (1670), Expect = 9.610e-232 Identity = 355/444 (79.95%), Postives = 364/444 (81.98%), Query Frame = 1 Query: 1 MVDTNGATAGNTGARRPNAGSGGNGGASQAKPRHAAVAKPISNSKNVTAGGAKVTTVAGEHHSSSKEPENVTIQADPATSLGLSFAVGGVVRQASPSYPLY-----EVAPKGQVAALGVREGWRLTNIGKTDFTVTATSTPKHILEALAAARKRGTTYTLGFSTGGVNEAPNGVVRAEEQSTVEACDGSRVDNAVSETASGEAATAVPASGGETGNSDQVFVEGKELEEEDRKKGTSAGVEIGEDGETKETEGKCEGQVCEGKDVPSCKAETGRGDGEVTLKYEMYDEKFPIKDGCISAAEIDETYCLSFVMPNCTLHLGPLGPADRYARENGGELVPYLEENPSGTFHGLEDGEVYWVYVSRDEEEEKQDRERMKQARARFSVVQGMKQDVPEDGELVNRKDDGRNGLESCSCVYGNPCVDEYGCKDWHSRYAVAKANGWKGF 1317
MVDTNGATAGN RRPNAGSGGNGGASQAKPRHAAVAKPISNSK +V+ S+P +VAPKGQVAALGVREGWRLTNIGK DFTVTATSTPKHILEALAAARKRGTTYTLGFSTGG +EAPNG VRAEEQS VEACDGSRVDNAVSETA GEAATA PASGGETGNSDQV VEGKELE+ DRKKG SAGVEIGE+GETKETEGK EGQV GKDVPSCKAETGRGDGEVTL YEMYDEKFPIKDG ISAAEIDETYCLSFVMPNCTLHLGPLGPADRYAREN GELVPYLEENPSGTFHGLEDGEVYWVYVSRD+EEEKQDRERMKQ VVQGMKQD+PEDGE VNRKDDGRNGLESCSCVYGNPCVDEYGCKDWHSRYAVAKANGWKGF
Sbjct: 1 MVDTNGATAGN---RRPNAGSGGNGGASQAKPRHAAVAKPISNSK--------------------------------------------LVKPLCHSWPALHLLHIQVAPKGQVAALGVREGWRLTNIGKNDFTVTATSTPKHILEALAAARKRGTTYTLGFSTGGADEAPNGAVRAEEQSIVEACDGSRVDNAVSETAGGEAATAGPASGGETGNSDQVCVEGKELEQ-DRKKGASAGVEIGENGETKETEGKGEGQVFGGKDVPSCKAETGRGDGEVTLMYEMYDEKFPIKDGSISAAEIDETYCLSFVMPNCTLHLGPLGPADRYARENEGELVPYLEENPSGTFHGLEDGEVYWVYVSRDDEEEKQDRERMKQ------VVQGMKQDLPEDGEFVNRKDDGRNGLESCSCVYGNPCVDEYGCKDWHSRYAVAKANGWKGF 390
BLAST of mRNA_E-siliculosus-1a_M_contig95.17505.1 vs. uniprot
Match: A0A6H5JDM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDM1_9PHAE) HSP 1 Score: 455 bits (1171), Expect = 1.120e-156 Identity = 253/347 (72.91%), Postives = 262/347 (75.50%), Query Frame = 1 Query: 283 SPSYPLYEVAPKGQVAALGVREGWRLTNIGK-TDFTVTATSTPKHILEALAAARKRGTTYTLGFSTGGVNEAPNGVVRAEEQSTVEACDGSRVDNAVSETASGEAATAVPASGGETGNSDQVFVEGKELEEEDRKKGTSAGVEIGEDGETKETEGKCEGQVCEGKDVPSCKAETGR-GDGEVTLKYEMYDEKFPIKDGCISAAEIDETYCLSFVMPNCTLHLGPLGPADRYARENGGELVPYLEENPSGTFHGLEDGEVYWVYVSRDEEEEKQDRERMKQARARFSVVQGMKQDVPEDGELVNRKDDGRNGLESCSCVYGNPCVDEYGCKDWHSRYAVAKANGWKGF 1317
+P + +VAPKGQVAALGVREGWRLTNIGK TDFTVTA STPK ILEALAAARKRGTTYTLGFSTGG EAPNGVV EEQS VEA DGSRVD AVSE GNSD V VEGKE +EEDRKKG SAGVEIG+ GETKETEG EGQV EGKD PS KAETGR GDGEVTL YEMYDE FPIK+GCISAAEIDETYCLSFVMPNCTLHLGPLGPADRYAREN GELVPYLE GT VVQGMK+D+PEDGELVNRKDDGRNGLESCSCVYGNPCVDEYGCK+WHSRYAVAKANGWKGF
Sbjct: 29 TPGAHVNKVAPKGQVAALGVREGWRLTNIGKKTDFTVTAMSTPKRILEALAAARKRGTTYTLGFSTGGAYEAPNGVVGTEEQSDVEARDGSRVDTAVSEXXXXXXXXXXXXXXXXXGNSDGVRVEGKE-QEEDRKKGASAGVEIGDGGETKETEGNGEGQVFEGKDAPSSKAETGRRGDGEVTLMYEMYDENFPIKNGCISAAEIDETYCLSFVMPNCTLHLGPLGPADRYARENEGELVPYLEALVHGT-----------------------------------QVVQGMKRDLPEDGELVNRKDDGRNGLESCSCVYGNPCVDEYGCKNWHSRYAVAKANGWKGF 339
BLAST of mRNA_E-siliculosus-1a_M_contig95.17505.1 vs. uniprot
Match: A0A3R6VPD3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6VPD3_9STRA) HSP 1 Score: 177 bits (449), Expect = 2.400e-49 Identity = 87/172 (50.58%), Postives = 113/172 (65.70%), Query Frame = 1 Query: 805 RGDGEVTLKYEMYDEKFPIKDGCISAAEIDETYCLSFVMPNCTLHLGPLGPADRYARENGGELVP-YLEENPSGTFHGLEDGEVYWVYVSRDEEEEKQDRERMKQARARFSVVQGMKQDVPEDGELVNRKDDGRNGLESCSCVYGNPCVDEYGCKDWHSRYAVAKANGWKGF 1317
R +G V LKYEMY E+F I +G +A +DE YCLSFVMP+C +HL P + A+E+ Y+ E+P+GTFHGLE G+ Y+VY+ ++ E+ QD+ +M+ A Q K D +KDDGR G ESCSC+ GNPCVDEYGCKDWH+RYA+A NGWKGF
Sbjct: 82 RQNGHVVLKYEMYSEQFEIANGSTTATVVDEAYCLSFVMPHCRIHLSEWDPPTKVAKESQSATNSVYVLEDPAGTFHGLESGKTYYVYIEQEAEQLAQDQAKMRAIAATMDGAQPSKAD---------KKDDGR-GFESCSCIEGNPCVDEYGCKDWHNRYAIAMKNGWKGF 243
BLAST of mRNA_E-siliculosus-1a_M_contig95.17505.1 vs. uniprot
Match: A0A024U0G6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U0G6_9STRA) HSP 1 Score: 177 bits (449), Expect = 1.770e-48 Identity = 87/172 (50.58%), Postives = 113/172 (65.70%), Query Frame = 1 Query: 805 RGDGEVTLKYEMYDEKFPIKDGCISAAEIDETYCLSFVMPNCTLHLGPLGPADRYARENGGELVP-YLEENPSGTFHGLEDGEVYWVYVSRDEEEEKQDRERMKQARARFSVVQGMKQDVPEDGELVNRKDDGRNGLESCSCVYGNPCVDEYGCKDWHSRYAVAKANGWKGF 1317
R +G V LKYEMY E+F I +G +A +DE YCLSFVMP+C +HL P + A+E+ Y+ E+P+GTFHGLE G+ Y+VY+ ++ E+ QD+ +M+ A Q K D +KDDGR G ESCSC+ GNPCVDEYGCKDWH+RYA+A NGWKGF
Sbjct: 153 RQNGHVVLKYEMYSEQFEIANGSTTATVVDEAYCLSFVMPHCRIHLSEWDPPTKVAKESQSATNSVYVLEDPAGTFHGLESGKTYYVYIEQEAEQLAQDQAKMRAIAATMDGAQPSKAD---------KKDDGR-GFESCSCIEGNPCVDEYGCKDWHNRYAIAMKNGWKGF 314
BLAST of mRNA_E-siliculosus-1a_M_contig95.17505.1 vs. uniprot
Match: A0A7S0SXS3_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SXS3_9STRA) HSP 1 Score: 166 bits (421), Expect = 7.610e-46 Identity = 88/172 (51.16%), Postives = 111/172 (64.53%), Query Frame = 1 Query: 814 GEVTLKYEMYDEKFPIKDGCISAAEIDETYCLSFVMPNCTLHLGPLGPADRYARENGGELVP----YLEENPSGTFHGLEDGEVYWVYVSRDEEEEKQDRERMKQARARFSVVQGMKQDVPEDGELVNRKDDGRNGLESCSCVYGNPCVDEYGCKDWHSRYAVAKANGWKGF 1317
G V L YE YDE FPI DG + IDE Y LSFVMPNC +HL P + E EL P Y+EENP+G +HGL EVY+VY+ +D + + ++E V++ +K D E + +KDDGR +ESCSC+YGNPCVDEYGCKDW++RYA+AKANGWKGF
Sbjct: 38 GLVKLIYETYDELFPITDGSTTHENIDEVYALSFVMPNCRIHLSKYDPKQKRQLEI--ELKPLNEIYIEENPTGVYHGLIADEVYYVYIEQDSIQLELEKEN------NAKVIEILKND-----EEIIKKDDGRV-IESCSCIYGNPCVDEYGCKDWNNRYAIAKANGWKGF 195
BLAST of mRNA_E-siliculosus-1a_M_contig95.17505.1 vs. uniprot
Match: A0A485L7F0_9STRA (Aste57867_16892 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L7F0_9STRA) HSP 1 Score: 169 bits (427), Expect = 2.260e-45 Identity = 82/168 (48.81%), Postives = 111/168 (66.07%), Query Frame = 1 Query: 814 GEVTLKYEMYDEKFPIKDGCISAAEIDETYCLSFVMPNCTLHLGPLGPADRYARENGGELVPYLEENPSGTFHGLEDGEVYWVYVSRDEEEEKQDRERMKQARARFSVVQGMKQDVPEDGELVNRKDDGRNGLESCSCVYGNPCVDEYGCKDWHSRYAVAKANGWKGF 1317
G+VTLKYEMY E+F I +G + AA ID+ YCLSFVMP C +HL P + E G+ ++ ENP GT+HGL+ Y+VY+ ++ ++ +D+ RM++ A ++G + P + DDGR G ESCSCV GNPCVDEYGCKDWH+R+A+A NGWKGF
Sbjct: 147 GQVTLKYEMYSEQFAIANGSMVAAAIDDAYCLSFVMPQCLIHLSLHDPPTKLELETAGQRNLFVYENPLGTYHGLDADSTYYVYIEQEADQLARDQARMREIAA---TMEGANRGKP------MKMDDGR-GFESCSCVEGNPCVDEYGCKDWHNRFAIATKNGWKGF 304
BLAST of mRNA_E-siliculosus-1a_M_contig95.17505.1 vs. uniprot
Match: W2RJ32_PHYPN (Uncharacterized protein n=10 Tax=Phytophthora TaxID=4783 RepID=W2RJ32_PHYPN) HSP 1 Score: 166 bits (421), Expect = 8.710e-45 Identity = 84/174 (48.28%), Postives = 108/174 (62.07%), Query Frame = 1 Query: 808 GDGEVTLKYEMYDEKFPIKDGCISAAEIDETYCLSFVMPNCTLHLGPLGPADRYARENGGELVPYLEENPSGTFHGLEDGEVYWVYVSRDEEEEKQDRERMKQARARFSVVQGMKQDVPEDGELVNRK----DDGRNGLESCSCVYGNPCVDEYGCKDWHSRYAVAKANGWKGF 1317
G+G V L YE YDE FPI+DG + A IDE YCLSFVMPNC + L +R+ RE G + E+P GT+H LE + Y+V + ++ ++ ++D+E K DGEL +K DDGR G ESCSC+YGNPCVDEYGC+DWHSR+A+A NGWKGF
Sbjct: 122 GNGMVKLIYESYDELFPIEDGSTTQANIDEIYCLSFVMPNCLVRLSRHPNPERFQREESGIFDSLVREDPRGTYHDLEKDQTYYVIIEQEADQLRRDQEATK---------------ALWDGELQKQKKADKDDGR-GFESCSCIYGNPCVDEYGCRDWHSRFAIATKNGWKGF 279
BLAST of mRNA_E-siliculosus-1a_M_contig95.17505.1 vs. uniprot
Match: A0A8K1C6C9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C6C9_PYTOL) HSP 1 Score: 167 bits (424), Expect = 1.480e-44 Identity = 87/171 (50.88%), Postives = 107/171 (62.57%), Query Frame = 1 Query: 805 RGDGEVTLKYEMYDEKFPIKDGCISAAEIDETYCLSFVMPNCTLHLGPLGPADRYARENGGELVPYLEENPSGTFHGLEDGEVYWVYVSRDEEEEKQDRERMKQARARFSVVQGMKQDVPEDGELVNRKDDGRNGLESCSCVYGNPCVDEYGCKDWHSRYAVAKANGWKGF 1317
RG+G V L YE YDE FPI DG + A IDE YCLSFVMPNC + L A+R+ REN G + E+P G + L E Y+V V ++ ++ ++D+E K A PE + KDDGR G ESCSC+YGNPCVDEYGCKDWHSR+A+A ANGWKGF
Sbjct: 181 RGNGMVKLIYEQYDELFPIVDGSTTQANIDEVYCLSFVMPNCLVRLSYHPNAERFERENTGTFDSLVREDPRGVYQDLIKDETYYVVVEQEADQLRRDQEATKVKWA------------PEIKQDKLSKDDGR-GFESCSCIYGNPCVDEYGCKDWHSRFAIATANGWKGF 338
BLAST of mRNA_E-siliculosus-1a_M_contig95.17505.1 vs. uniprot
Match: A0A662YFV4_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YFV4_9STRA) HSP 1 Score: 164 bits (416), Expect = 1.570e-44 Identity = 84/170 (49.41%), Postives = 106/170 (62.35%), Query Frame = 1 Query: 808 GDGEVTLKYEMYDEKFPIKDGCISAAEIDETYCLSFVMPNCTLHLGPLGPADRYARENGGELVPYLEENPSGTFHGLEDGEVYWVYVSRDEEEEKQDRERMKQARARFSVVQGMKQDVPEDGELVNRKDDGRNGLESCSCVYGNPCVDEYGCKDWHSRYAVAKANGWKGF 1317
G G V L YE YDE FPI+DG + A IDE YCLSFVMPNC + L +R+ RE G+ + E+P GT+H LE +VY+V V + ++ ++D++ K A QG K+DGR G ESCSC+YGNPCVDEYGC+DWHSR+AVA NGWKGF
Sbjct: 83 GSGMVKLIYEHYDELFPIEDGSTTQANIDEVYCLSFVMPNCLVRLSRHPNPERFQREESGQFDSLVSEDPRGTYHDLEKDQVYYVVVEQASDQLRRDQDATKARWASEGNDQGHA-----------GKNDGR-GFESCSCIYGNPCVDEYGCRDWHSRFAVATKNGWKGF 240
BLAST of mRNA_E-siliculosus-1a_M_contig95.17505.1 vs. uniprot
Match: A0A329SR06_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SR06_9STRA) HSP 1 Score: 166 bits (420), Expect = 4.410e-44 Identity = 86/174 (49.43%), Postives = 106/174 (60.92%), Query Frame = 1 Query: 808 GDGEVTLKYEMYDEKFPIKDGCISAAEIDETYCLSFVMPNCTLHLGPLGPADRYARENGGELVPYLEENPSGTFHGLEDGEVYWVYVSRDEEEEKQDRERMKQARARFSVVQGMKQDVPEDGELVNRK----DDGRNGLESCSCVYGNPCVDEYGCKDWHSRYAVAKANGWKGF 1317
G G V L YE YDE FPI+DG + A IDE YCLSFVMPNC + L +R+ RE G + E P GT+H LE Y+V V ++ ++ ++D+E K V DGEL +K DDGR G E+CSC+YGNPCVDEYGC+DWHSR+AVA NGWKGF
Sbjct: 171 GTGMVKLIYESYDELFPIEDGSTNQANIDEVYCLSFVMPNCLVRLSRHPNPERFQREESGIFDSLVREGPRGTYHDLEKDHTYYVVVEQEADQLRRDQEATK---------------VLWDGELQKQKKADKDDGR-GFETCSCIYGNPCVDEYGCRDWHSRFAVATKNGWKGF 328 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig95.17505.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig95.17505.1 >prot_E-siliculosus-1a_M_contig95.17505.1 ID=prot_E-siliculosus-1a_M_contig95.17505.1|Name=mRNA_E-siliculosus-1a_M_contig95.17505.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=440bp MVDTNGATAGNTGARRPNAGSGGNGGASQAKPRHAAVAKPISNSKNVTAGback to top mRNA from alignment at E-siliculosus-1a_M_contig95:378993..384236+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig95.17505.1 ID=mRNA_E-siliculosus-1a_M_contig95.17505.1|Name=mRNA_E-siliculosus-1a_M_contig95.17505.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=5244bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:378993..384236+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig95:378993..384236+ >mRNA_E-siliculosus-1a_M_contig95.17505.1 ID=mRNA_E-siliculosus-1a_M_contig95.17505.1|Name=mRNA_E-siliculosus-1a_M_contig95.17505.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=2640bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:378993..384236+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |