mRNA_E-siliculosus-1a_M_contig95.17504.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig95.17504.1 vs. uniprot
Match: D7G1U7_ECTSI (CUE domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1U7_ECTSI) HSP 1 Score: 486 bits (1252), Expect = 2.450e-162 Identity = 326/340 (95.88%), Postives = 328/340 (96.47%), Query Frame = 1 Query: 1 MAEISTEDAVEQLHQMFGDYDKTALATVLEAHGGHVERTVEHLLSNPQAAXXXXXXXXXXXXXXXXXXXSGTDHDAALALQLSREWSDEPTNMPPPPVRPQGIPTPYGVGGRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGDRRGRRVALPEQFLRTPGWTGGGAGEVSSDPQVAADAKLAMMLQNEAFQRELQSHPDLAYLGRGSRSGDSRGNAFGMGGEGPSIKEQMTSMGNDIRRKVDELAVRWKMKDPGRADQTTEYSSVPLMSSVDDDADDQAEVVHFSQNNATRRSSSGGSAAGVGVFRADSAGEEQLGE 1020 MAEISTEDAVEQLHQMFGDYDKTALA VLEAHGGHVERTVEHLLSNPQAA XXXXXXXXXXXXXXX GTDHDAALALQLSREWSDEPTNMPPPPVRPQGIPTPYGVG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGDRRGRRVALPEQFLRTPGWTGGGAGEVSSDPQVAADAKLAMMLQNEAFQRELQSHPDLAYLGRGSRSGDSRGNAFGMGG+GPSIKEQMTSMGNDIRRKVDELAVRWKMKDPGRADQTTEYSSVPLMSSVDDDADDQAEVVHFSQNNATRRSSSGGSAAGVGVFRADSAGEEQL + Sbjct: 1 MAEISTEDAVEQLHQMFGDYDKTALANVLEAHGGHVERTVEHLLSNPQAASGXXXXXXXXXXXXXXXASRGTDHDAALALQLSREWSDEPTNMPPPPVRPQGIPTPYGVG-----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGDRRGRRVALPEQFLRTPGWTGGGAGEVSSDPQVAADAKLAMMLQNEAFQRELQSHPDLAYLGRGSRSGDSRGNAFGMGGDGPSIKEQMTSMGNDIRRKVDELAVRWKMKDPGRADQTTEYSSVPLMSSVDDDADDQAEVVHFSQNNATRRSSSGGSAAGVGVFRADSAGEEQLAD 335
BLAST of mRNA_E-siliculosus-1a_M_contig95.17504.1 vs. uniprot
Match: A0A836CN65_9STRA (CUE domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN65_9STRA) HSP 1 Score: 79.7 bits (195), Expect = 1.100e-12 Identity = 62/155 (40.00%), Postives = 80/155 (51.61%), Query Frame = 1 Query: 502 RGRRVALPEQFLRTPGWTGGGAGEVSSDPQVAADAKLAMMLQNEAFQRELQSHPDLA-YLGRGSRSGDSRGNAFGMGGEGPSIKEQMTSMGNDIRRKVDELAVRWKMKDPGRADQTTEYSSVPLMSSVDDDAD-DQAEVVHFSQNNATRRSSSGG 960 RG V LP+ FLR PG QV AD +LA MLQN F L +HP+ A Y GR + S A GPS+ EQ+ +MG D++R + LA +W +K + +SVPLM+ AD D+AEVV F Q + T R SGG Sbjct: 84 RGTPVNLPDNFLRVPG------SMTEESAQVQADERLAAMLQNADF---LAAHPEYASYGGRAPAARTSH--AQHAEDTGPSVTEQLQTMGADMKRNLLGLAAKWNLKPSTAPAADSGSASVPLMNRNSTAADEDEAEVVTFDQGDTTTRRGSGG 227 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig95.17504.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig95.17504.1 >prot_E-siliculosus-1a_M_contig95.17504.1 ID=prot_E-siliculosus-1a_M_contig95.17504.1|Name=mRNA_E-siliculosus-1a_M_contig95.17504.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=394bp MAEISTEDAVEQLHQMFGDYDKTALATVLEAHGGHVERTVEHLLSNPQAAback to top mRNA from alignment at E-siliculosus-1a_M_contig95:367900..377251+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig95.17504.1 ID=mRNA_E-siliculosus-1a_M_contig95.17504.1|Name=mRNA_E-siliculosus-1a_M_contig95.17504.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=9352bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:367900..377251+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig95:367900..377251+ >mRNA_E-siliculosus-1a_M_contig95.17504.1 ID=mRNA_E-siliculosus-1a_M_contig95.17504.1|Name=mRNA_E-siliculosus-1a_M_contig95.17504.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=2364bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:367900..377251+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |