Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 546 |
| Model size | 720 |
| Exons | 1 |
| Hectar predicted targeting category | other localisation |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622936509.1609526-UTR-E-siliculosus-1a_M_contig95:357788..357878 | 1622936509.1609526-UTR-E-siliculosus-1a_M_contig95:357788..357878 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig95 357789..357878 + |
| 1696251110.0604873-UTR-E-siliculosus-1a_M_contig95:357788..357878 | 1696251110.0604873-UTR-E-siliculosus-1a_M_contig95:357788..357878 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig95 357789..357878 + |
| 1622936509.2312388-UTR-E-siliculosus-1a_M_contig95:358424..358508 | 1622936509.2312388-UTR-E-siliculosus-1a_M_contig95:358424..358508 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig95 358425..358508 + |
| 1696251110.0830474-UTR-E-siliculosus-1a_M_contig95:358424..358508 | 1696251110.0830474-UTR-E-siliculosus-1a_M_contig95:358424..358508 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig95 358425..358508 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622936509.2150676-CDS-E-siliculosus-1a_M_contig95:357878..358424 | 1622936509.2150676-CDS-E-siliculosus-1a_M_contig95:357878..358424 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig95 357879..358424 + |
| 1696251110.07205-CDS-E-siliculosus-1a_M_contig95:357878..358424 | 1696251110.07205-CDS-E-siliculosus-1a_M_contig95:357878..358424 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig95 357879..358424 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig95.17503.1 >prot_E-siliculosus-1a_M_contig95.17503.1 ID=prot_E-siliculosus-1a_M_contig95.17503.1|Name=mRNA_E-siliculosus-1a_M_contig95.17503.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=182bp
MEKYGKEGRGQRKTVWCFSLTRRPGDNIEWGTDDLSRQSGGYRCTQYRRG
GRTNQRGEQEGTLIVEDKTPICVCDTFSLNNGTVPIPTIRGRYISTTRRG
TGRTTQREPEWRAGRNLLGGATISLTREQATPIKSHFLCAQIRFFDVGQP
VKFIIVYANESKACTHTHNTQALQRNDTIHI* back to topmRNA from alignment at E-siliculosus-1a_M_contig95:357789..358508+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_M_contig95.17503.1 ID=mRNA_E-siliculosus-1a_M_contig95.17503.1|Name=mRNA_E-siliculosus-1a_M_contig95.17503.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=720bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:357789..358508+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GACGAGACAACAAGACGGAGTGGGGACAATAAAGATAAGAAAAAAACCCC
GAAAGAAACGGGACCAAGGGGTAGGGAGAATACACTGGAGATGGAGAAAT
ACGGCAAGGAGGGCAGAGGCCAAAGAAAAACAGTGTGGTGCTTTTCCCTC
ACCAGGAGACCGGGAGATAACATAGAGTGGGGCACGGACGATTTAAGCAG
ACAAAGCGGGGGGTATCGATGCACGCAGTACAGGCGTGGCGGCAGAACCA
ACCAGAGGGGAGAACAAGAAGGGACTCTTATCGTAGAAGACAAGACACCT
ATTTGCGTATGTGACACATTTTCACTGAACAACGGTACCGTTCCAATACC
AACAATAAGGGGACGATATATCTCCACAACAAGGCGAGGCACAGGCAGAA
CGACGCAGAGAGAGCCAGAGTGGCGCGCCGGGCGGAACCTACTGGGGGGT
GCGACCATTTCTCTGACACGAGAACAAGCAACACCAATAAAATCCCATTT
CCTGTGCGCACAAATCCGCTTCTTCGACGTCGGTCAGCCGGTGAAATTTA
TCATTGTGTATGCCAACGAAAGCAAAGCATGCACGCACACACACAACACG
CAAGCTCTTCAGAGGAACGATACAATCCATATATAACATACCTCGGTTTC
ATCGGCCGGTGCGTCGGCGGCCTGAGACTTCTCCTCCAGCGCAGACATTG
TGATGTAAAAATGTGATGTG back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_M_contig95:357789..358508+ >mRNA_E-siliculosus-1a_M_contig95.17503.1 ID=mRNA_E-siliculosus-1a_M_contig95.17503.1|Name=mRNA_E-siliculosus-1a_M_contig95.17503.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1092bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:357789..358508+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGAGAAATACGGCAAGGAGGGCAGAGGCCAAAGAAAAACAGTGTGGTG
CTTTTCCCTCACCAGGAGACCGGGAGATAACATAGAGTGGGGCACGGACG
ATTTAAGCAGACAAAGCGGGGGGTATCGATGCACGCAGTACAGGCGTGGC
GGCAGAACCAACCAGAGGGGAGAACAAGAAGGGACTCTTATCGTAGAAGA
CAAGACACCTATTTGCGTATGTGACACATTTTCACTGAACAACGGTACCG
TTCCAATACCAACAATAAGGGGACGATATATCTCCACAACAAGGCGAGGC
ACAGGCAGAACGACGCAGAGAGAGCCAGAGTGGCGCGCCGGGCGGAACCT
ACTGGGGGGTGCGACCATTTCTCTGACACGAGAACAAGCAACACCAATAA
AATCCCATTTCCTGTGCGCACAAATCCGCTTCTTCGACGTCGGTCAGCCG
GTGAAATTTATCATTGTGTATGCCAACGAAAGCAAAGCATGCACGCACAC
ACACAACACGCAAGCTCTTCAGAGGAACGATACAATCCATATATAAATGG
AGAAATACGGCAAGGAGGGCAGAGGCCAAAGAAAAACAGTGTGGTGCTTT
TCCCTCACCAGGAGACCGGGAGATAACATAGAGTGGGGCACGGACGATTT
AAGCAGACAAAGCGGGGGGTATCGATGCACGCAGTACAGGCGTGGCGGCA
GAACCAACCAGAGGGGAGAACAAGAAGGGACTCTTATCGTAGAAGACAAG
ACACCTATTTGCGTATGTGACACATTTTCACTGAACAACGGTACCGTTCC
AATACCAACAATAAGGGGACGATATATCTCCACAACAAGGCGAGGCACAG
GCAGAACGACGCAGAGAGAGCCAGAGTGGCGCGCCGGGCGGAACCTACTG
GGGGGTGCGACCATTTCTCTGACACGAGAACAAGCAACACCAATAAAATC
CCATTTCCTGTGCGCACAAATCCGCTTCTTCGACGTCGGTCAGCCGGTGA
AATTTATCATTGTGTATGCCAACGAAAGCAAAGCATGCACGCACACACAC
AACACGCAAGCTCTTCAGAGGAACGATACAATCCATATATAA back to top
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