mRNA_E-siliculosus-1a_M_contig95.17502.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig95.17502.1 vs. uniprot
Match: D7G1U6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1U6_ECTSI) HSP 1 Score: 356 bits (913), Expect = 4.170e-124 Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 1 Query: 1 MSALEEKSQAADAPADETEDTRSVHLVSQEGESFDIKVSVAKMSNLVKTMIDEDAEEDGDAQEIPLPNVKASVLSKVIEFCAHYKEDPMNEIEKPLKSANMHDVVQEWYAKFVEVQQETLFELILAANYMDIKPLLDLTCATVASMIKGKTAEEIRKTFNIVNDFTPEEEAQVREENKWCEDA 549 MSALEEKSQAADAPADETEDTRSVHLVSQEGESFDIKVSVAKMSNLVKTMIDEDAEEDGDAQEIPLPNVKASVLSKVIEFCAHYKEDPMNEIEKPLKSANMHDVVQEWYAKFVEVQQETLFELILAANYMDIKPLLDLTCATVASMIKGKTAEEIRKTFNIVNDFTPEEEAQVREENKWCEDA Sbjct: 1 MSALEEKSQAADAPADETEDTRSVHLVSQEGESFDIKVSVAKMSNLVKTMIDEDAEEDGDAQEIPLPNVKASVLSKVIEFCAHYKEDPMNEIEKPLKSANMHDVVQEWYAKFVEVQQETLFELILAANYMDIKPLLDLTCATVASMIKGKTAEEIRKTFNIVNDFTPEEEAQVREENKWCEDA 183
BLAST of mRNA_E-siliculosus-1a_M_contig95.17502.1 vs. uniprot
Match: A0A835Z9K0_9STRA (Skp1 family, dimerization domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9K0_9STRA) HSP 1 Score: 286 bits (731), Expect = 2.630e-96 Identity = 144/177 (81.36%), Postives = 162/177 (91.53%), Query Frame = 1 Query: 25 QAADAPADET--EDTRSVHLVSQEGESFDIKVSVAKMSNLVKTMIDEDAEEDGDAQEIPLPNVKASVLSKVIEFCAHYKEDPMNEIEKPLKSANMHDVVQEWYAKFVEVQQETLFELILAANYMDIKPLLDLTCATVASMIKGKTAEEIRKTFNIVNDFTPEEEAQVREENKWCEDA 549 +AA A A ET EDTR+V+LVSQEG+SFD+ + VAKMS LVKTMID+DA+ED +AQEIPLPNVK+SVL+K+IEFC HY EDPMNEIEKPLKSANM +VVQ+W+A FV+V+QE LFELILAANYMDIKPLLDLTCATVASMIKGKT EEIRKTFNIVNDFTPEEEAQVREENKWCE+A Sbjct: 11 EAAPAAATETQAEDTRTVNLVSQEGDSFDVSIKVAKMSELVKTMIDDDADEDAEAQEIPLPNVKSSVLTKIIEFCRHYIEDPMNEIEKPLKSANMQEVVQDWFANFVQVEQELLFELILAANYMDIKPLLDLTCATVASMIKGKTPEEIRKTFNIVNDFTPEEEAQVREENKWCEEA 187
BLAST of mRNA_E-siliculosus-1a_M_contig95.17502.1 vs. uniprot
Match: A0A836CN28_9STRA (Skp1 family, dimerization domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN28_9STRA) HSP 1 Score: 282 bits (722), Expect = 5.210e-95 Identity = 141/174 (81.03%), Postives = 156/174 (89.66%), Query Frame = 1 Query: 28 AADAPADETEDTRSVHLVSQEGESFDIKVSVAKMSNLVKTMIDEDAEEDGDAQEIPLPNVKASVLSKVIEFCAHYKEDPMNEIEKPLKSANMHDVVQEWYAKFVEVQQETLFELILAANYMDIKPLLDLTCATVASMIKGKTAEEIRKTFNIVNDFTPEEEAQVREENKWCEDA 549 AA A E+TR+VHLVSQEG+SFD+ V VAKMS LVKTM+DE+ EED +AQEIPLPNVK+SVL+KVIEFC HY EDPMNEIEKPLKSANM +VVQ W+A +V+V+QE LFELILAANYMDIKPLLDLTCATVASMIKGKT EEIRKTFNIVNDFTPEEEAQVREENKWCE+A Sbjct: 9 AAAEAAPTAEETRTVHLVSQEGDSFDVSVKVAKMSELVKTMLDEELEEDAEAQEIPLPNVKSSVLTKVIEFCRHYVEDPMNEIEKPLKSANMQEVVQNWFATYVQVEQEVLFELILAANYMDIKPLLDLTCATVASMIKGKTPEEIRKTFNIVNDFTPEEEAQVREENKWCEEA 182
BLAST of mRNA_E-siliculosus-1a_M_contig95.17502.1 vs. uniprot
Match: A0A7S3HQT9_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HQT9_9STRA) HSP 1 Score: 268 bits (685), Expect = 1.390e-89 Identity = 133/167 (79.64%), Postives = 150/167 (89.82%), Query Frame = 1 Query: 49 ETEDTRSVHLVSQEGESFDIKVSVAKMSNLVKTMIDEDAEEDGDAQEIPLPNVKASVLSKVIEFCAHYKEDPMNEIEKPLKSANMHDVVQEWYAKFVEVQQETLFELILAANYMDIKPLLDLTCATVASMIKGKTAEEIRKTFNIVNDFTPEEEAQVREENKWCEDA 549 E +D R++HLVSQEGE FD+ +SV KMS LVKTMIDED E+ +AQEIPLPNVK+++LSKVIEF HYKE+PMNEIEKPLKSANM +VVQEWY+ F+ V QE LFELILAANYMDIKPLLDLTCATVASMIKGK+ E+IRKTFNIVNDFTPEEEAQVREENKWCE+A Sbjct: 3 EADDNRTIHLVSQEGECFDVPISVGKMSELVKTMIDEDQNEE-EAQEIPLPNVKSAILSKVIEFTKHYKEEPMNEIEKPLKSANMAEVVQEWYSNFIAVDQEILFELILAANYMDIKPLLDLTCATVASMIKGKSPEDIRKTFNIVNDFTPEEEAQVREENKWCEEA 168
BLAST of mRNA_E-siliculosus-1a_M_contig95.17502.1 vs. uniprot
Match: A0A7S2SQM9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SQM9_9STRA) HSP 1 Score: 267 bits (682), Expect = 6.430e-89 Identity = 138/183 (75.41%), Postives = 156/183 (85.25%), Query Frame = 1 Query: 1 MSALEEKSQAADAPADETEDTRSVHLVSQEGESFDIKVSVAKMSNLVKTMIDEDAEEDGDAQEIPLPNVKASVLSKVIEFCAHYKEDPMNEIEKPLKSANMHDVVQEWYAKFVEVQQETLFELILAANYMDIKPLLDLTCATVASMIKGKTAEEIRKTFNIVNDFTPEEEAQVREENKWCEDA 549 M+A EEK+ A A+E ED +V LVSQEG++F ++ VAKMS LVKTM+ ++ E D + QEIPLPNVK+SVL KVIEFC HYKEDPM EIEKPLKS+ M +VVQEWYA FV+V+QE LFELILAANYMDIKPLLDLTCATVASMIKGKT EEIRKTFNIVNDFTPEEEAQVREENKWCE+A Sbjct: 1 MAAAEEKNGADPMVAEEEEDEGNVQLVSQEGDNFQVEAKVAKMSELVKTMLPDEDEGD-EVQEIPLPNVKSSVLGKVIEFCRHYKEDPMTEIEKPLKSSTMSEVVQEWYATFVDVEQEVLFELILAANYMDIKPLLDLTCATVASMIKGKTPEEIRKTFNIVNDFTPEEEAQVREENKWCEEA 182
BLAST of mRNA_E-siliculosus-1a_M_contig95.17502.1 vs. uniprot
Match: A0A7S2BM50_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BM50_9STRA) HSP 1 Score: 266 bits (679), Expect = 1.910e-88 Identity = 132/183 (72.13%), Postives = 156/183 (85.25%), Query Frame = 1 Query: 1 MSALEEKSQAADAPADETEDTRSVHLVSQEGESFDIKVSVAKMSNLVKTMIDEDAEEDGDAQEIPLPNVKASVLSKVIEFCAHYKEDPMNEIEKPLKSANMHDVVQEWYAKFVEVQQETLFELILAANYMDIKPLLDLTCATVASMIKGKTAEEIRKTFNIVNDFTPEEEAQVREENKWCEDA 549 M+A + + + D P + +D + V LVSQEG++F ++ VAKMS LVKTMI E+ + + D QEIPLPNVK+ +L KV+EFC HY E+PMNEIEKPLKS+NMH+VVQEWYA +VEV+QETLFELILAANYMDIKPLLDLTCATVASMIKGKT E+IRKTFNIVNDFTPEEEAQVREENKWCE+A Sbjct: 1 MAAEQTEDKKIDEPEADEDDGKMVDLVSQEGDNFQVEKRVAKMSELVKTMIPEEEDGETDQQEIPLPNVKSQILGKVMEFCKHYCEEPMNEIEKPLKSSNMHEVVQEWYANYVEVEQETLFELILAANYMDIKPLLDLTCATVASMIKGKTPEDIRKTFNIVNDFTPEEEAQVREENKWCEEA 183
BLAST of mRNA_E-siliculosus-1a_M_contig95.17502.1 vs. uniprot
Match: A0A7S3JW81_9STRA (Hypothetical protein n=3 Tax=Pelagomonadales TaxID=54409 RepID=A0A7S3JW81_9STRA) HSP 1 Score: 268 bits (686), Expect = 2.180e-88 Identity = 136/168 (80.95%), Postives = 152/168 (90.48%), Query Frame = 1 Query: 49 ETEDTRSVHLVSQEGESFDIKVSVAKMSNLVKTMIDEDAEEDGD-AQEIPLPNVKASVLSKVIEFCAHYKEDPMNEIEKPLKSANMHDVVQEWYAKFVEVQQETLFELILAANYMDIKPLLDLTCATVASMIKGKTAEEIRKTFNIVNDFTPEEEAQVREENKWCEDA 549 E +D+R V+L+SQEG+ F+++V+VAKMS LVKTMI E+A+ED D AQEIPLPNVK+ VLSKVIEFC Y DPM EIEKPLKSANMH+VVQEWYAK+V+V QE LFELILAANYMDIKPLLDLTCATVASMIKGKT EEIRKTFNIVNDFTPEEEAQVREENKWCE+A Sbjct: 93 EEDDSRRVNLMSQEGDQFEVEVAVAKMSELVKTMIPEEADEDDDQAQEIPLPNVKSHVLSKVIEFCRQYVNDPMAEIEKPLKSANMHEVVQEWYAKYVDVDQELLFELILAANYMDIKPLLDLTCATVASMIKGKTPEEIRKTFNIVNDFTPEEEAQVREENKWCEEA 260
BLAST of mRNA_E-siliculosus-1a_M_contig95.17502.1 vs. uniprot
Match: F0XYF9_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XYF9_AURAN) HSP 1 Score: 259 bits (662), Expect = 3.060e-86 Identity = 127/157 (80.89%), Postives = 144/157 (91.72%), Query Frame = 1 Query: 79 VSQEGESFDIKVSVAKMSNLVKTMIDEDAEEDGDAQEIPLPNVKASVLSKVIEFCAHYKEDPMNEIEKPLKSANMHDVVQEWYAKFVEVQQETLFELILAANYMDIKPLLDLTCATVASMIKGKTAEEIRKTFNIVNDFTPEEEAQVREENKWCEDA 549 +SQEG+ F+++V VAKMS LVKTMI E+A+E+ +AQEIPLPNVK+ VL+KVIEFC Y E+PM+EIEKPLKSANMH+VVQEWYA +V+V QE LFELILAANYMDIKPLLDLTCATVASMIKGKT EEIRKTFNIVNDFTPEEEAQVREENKWCE+A Sbjct: 1 MSQEGDQFEVEVKVAKMSELVKTMIPEEADEEEEAQEIPLPNVKSHVLAKVIEFCRRYAEEPMSEIEKPLKSANMHEVVQEWYANYVDVDQELLFELILAANYMDIKPLLDLTCATVASMIKGKTPEEIRKTFNIVNDFTPEEEAQVREENKWCEEA 157
BLAST of mRNA_E-siliculosus-1a_M_contig95.17502.1 vs. uniprot
Match: A0A7S2DNG6_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DNG6_9STRA) HSP 1 Score: 259 bits (663), Expect = 1.380e-85 Identity = 131/168 (77.98%), Postives = 147/168 (87.50%), Query Frame = 1 Query: 46 DETEDTRSVHLVSQEGESFDIKVSVAKMSNLVKTMIDEDAEEDGDAQEIPLPNVKASVLSKVIEFCAHYKEDPMNEIEKPLKSANMHDVVQEWYAKFVEVQQETLFELILAANYMDIKPLLDLTCATVASMIKGKTAEEIRKTFNIVNDFTPEEEAQVREENKWCEDA 549 D +D + V LVSQEG++F ++ VAKMS LVKTMI ED EE D QEIPLPNVK+++L KVIEFC H+ +PM+EIEKPLKS+NMH+VVQEWYA +VEV QETLFELILAANYMDIKPLLDLTCATVASMIKGKT EEIRKTFNIVNDFTPEEEAQVREENKWCE+A Sbjct: 46 DAEDDGKHVDLVSQEGDNFQVEKKVAKMSELVKTMIPED-EEGEDQQEIPLPNVKSAILGKVIEFCKHHANEPMSEIEKPLKSSNMHEVVQEWYANYVEVDQETLFELILAANYMDIKPLLDLTCATVASMIKGKTPEEIRKTFNIVNDFTPEEEAQVREENKWCEEA 212
BLAST of mRNA_E-siliculosus-1a_M_contig95.17502.1 vs. uniprot
Match: A0A4D9D5I6_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D5I6_9STRA) HSP 1 Score: 256 bits (654), Expect = 9.300e-85 Identity = 125/158 (79.11%), Postives = 142/158 (89.87%), Query Frame = 1 Query: 70 VHLVSQEGESFDIKVSVAKMSNLVKTMIDEDAEEDGDAQEIPLPNVKASVLSKVIEFCAHYKEDPMNEIEKPLKSANMHDVVQEWYAKFVEVQQETLFELILAANYMDIKPLLDLTCATVASMIKGKTAEEIRKTFNIVNDFTPEEEAQVREENKWCE 543 VHLVSQEG+ ++++VSV KMS LVKTM+ +D ++ + QEIPLPNVK +VL+KVIEFC H+KEDPMN+IEKPLKSANMH+VVQ+WYA FV V QE LFELILAANYMDIKPLLDLTCATVASMIKGKT EEIR+TFNI NDFTPEEEAQVREENKWCE Sbjct: 14 VHLVSQEGDQYEVEVSVCKMSELVKTMLPDD-DDSSETQEIPLPNVKNNVLAKVIEFCKHHKEDPMNDIEKPLKSANMHEVVQDWYANFVNVDQELLFELILAANYMDIKPLLDLTCATVASMIKGKTPEEIRRTFNITNDFTPEEEAQVREENKWCE 170 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig95.17502.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig95.17502.1 >prot_E-siliculosus-1a_M_contig95.17502.1 ID=prot_E-siliculosus-1a_M_contig95.17502.1|Name=mRNA_E-siliculosus-1a_M_contig95.17502.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=184bp MSALEEKSQAADAPADETEDTRSVHLVSQEGESFDIKVSVAKMSNLVKTMback to top mRNA from alignment at E-siliculosus-1a_M_contig95:355472..358486- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig95.17502.1 ID=mRNA_E-siliculosus-1a_M_contig95.17502.1|Name=mRNA_E-siliculosus-1a_M_contig95.17502.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=3015bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:355472..358486- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig95:355472..358486- >mRNA_E-siliculosus-1a_M_contig95.17502.1 ID=mRNA_E-siliculosus-1a_M_contig95.17502.1|Name=mRNA_E-siliculosus-1a_M_contig95.17502.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1104bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:355472..358486- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |