mRNA_E-siliculosus-1a_M_contig95.17500.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig95.17500.1 vs. uniprot
Match: A0A6H5JC87_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC87_9PHAE) HSP 1 Score: 922 bits (2382), Expect = 0.000e+0 Identity = 720/1118 (64.40%), Postives = 732/1118 (65.47%), Query Frame = 2 Query: 104 MDGGASSTDAFRMPAEGEELTTPFSEFVVRYGHTPRLVRNMAAIAGVTAELPPRMEEPYRLVYFVVTDQMRTTIAALRAVLKEGLQAPLRTPTAFIIDELHTLEVFRKQGLATSLTNFVKGIAEAHGVELYVSSELYIRSFWELRGFEEETSPEVLRACSLDLDDGFNTGASTTLLRAGAAYTEYQPANDDRLSM------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RTLAARGLLAIPSSAGSRDGVVDLTGGSRSLAEQDEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAIERSDGARHDGAVRGXXXXXXXXXXXXXXXXXXXXXXXXXXDADAAAAGITSSAAAAPTSSS---ARSQVRAGEERGAXXXXXXXXXXXXXXXXRRAGGIAEDGRXXXXXXXXXXRRLXXXRDESGSSTPGEPSPCGADGAASVGMELDGVGAGRHGNERRRSSSRDVGDDGNTASLTENVCITAARDVGSGLGVASETTAPHAPRPLDAAAAAALEGNSNLTASLPPSRPASPCPSSASSCSFTLGPVPPRSRTSTWNQQQPTAVGALGHRDPNSAMTISKENDHXXXXXXXXXXXXXXQGRKAVYQPPPRGLGARGQQHQHQAAFAGDGGGMIGALGGVVYSPTTAGGTGGADVPGLGPGRFGNVGVGGGGGGLISDGIEPSDVIMRDFGVGADGLDGGGRLDDKLIAVAGWEGDDNDEELRRVMEASRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSRKGVAAATPNGGGPDVAVLPSFGSLEARDSTGAGVXXXXXXXXSDASGAALPSTCGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---QAPAWLGGWEDGEAVSFTGKGKGKGRCRD 2683
MDGGASSTDAFRMPAEGEELTTPFSEFVVRYGHTPRLVRN AAIAGV AELPPRMEEPYRLVYFVVTDQMRTTIA LRAVLKEGLQAPLRTPTAFIIDELHTLEVFRKQGLATSLTNFVKGIAEAHGVEL+VSSELYIRSFWELRGFEEETSPEVLRAC+LDLDDG NTGASTTLLRAGAAYTEYQPAND+RLS+ RTLAARGLLAIPSS GSRDGVVDLT SRSLAEQD XXXXXXXXXXXXXXXXX AIERSD ARHD AVRG XXXXXXXXXXXXX XDADAA GI S+AA ARSQVRAG ERGAXXXXXXXXXXXXXXXXRRAGG+ EDGRXXXXXXX RRL RDESGSSTPGEPSPCGADGAASVGMEL GVGAGR GNE RRSSSRD GDDGNTA LTENVCITAARDVGSGLGVASE APHAPRPLDAAAAAA EG+SN +SLPPSRPASPCPSSASSCSFTLGPVP RSRT TWNQQQPT VGA GHRDPNSAMT+SKEND Q RKAVYQPPP GLGAR +QHQHQAAFAGDGGGMIGALGGVVY TTAGG GADVPG G GRFGNVGVGGGGGGL SDGIEP+DV+MRDFGVGADGLDG GRLDDKLIAVAGWEGDDNDEELR VMEASRQ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX NGGGPDVAVLPSFGSLEAR STG GV SDA GA LPSTCGG XXXXXXXXXXXXXXXXXXXXXXXXXXXX QAPAWLGGWEDGEAVSFTGKGKGKGRCRD
Sbjct: 1 MDGGASSTDAFRMPAEGEELTTPFSEFVVRYGHTPRLVRNTAAIAGVAAELPPRMEEPYRLVYFVVTDQMRTTIATLRAVLKEGLQAPLRTPTAFIIDELHTLEVFRKQGLATSLTNFVKGIAEAHGVELFVSSELYIRSFWELRGFEEETSPEVLRACNLDLDDGSNTGASTTLLRAGAAYTEYQPANDERLSITRPFYHGGDGYLTAAGAXXXXXXXXXPTLAGSAAFMGQGRTGMESSGYGEGIGASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADGETVLPPSSRLLTNERLAQHNEEEKAKGLALPWGTLEQSSKTAEASMLSAAGDTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGVGATVAGMLGWTPSDRQIVAATCGTASGGGGIVDRRTLAARGLLAIPSS-GSRDGVVDLTCRSRSLAEQDXXXXXXXXXXXXXXXXXXXSCRGGGDAAAATAIERSDDARHDEAVRGGEGETSXXXXXXXXXXXXXGGQLSGXDADAAGGGIASTAAXXXXXXXXXXARSQVRAGVERGAXXXXXXXXXXXXXXXXRRAGGVVEDGRXXXXXXXGVSRRLRRRRDESGSSTPGEPSPCGADGAASVGMELGGVGAGRDGNEGRRSSSRDGGDDGNTALLTENVCITAARDVGSGLGVASEIAAPHAPRPLDAAAAAAREGSSNRPSSLPPSRPASPCPSSASSCSFTLGPVPSRSRTCTWNQQQPTTVGAPGHRDPNSAMTVSKEND-----PHHDRHLHQDQARKAVYQPPPMGLGARCRQHQHQAAFAGDGGGMIGALGGVVYPTTTAGGGSGADVPGFGAGRFGNVGVGGGGGGLTSDGIEPNDVMMRDFGVGADGLDGVGRLDDKLIAVAGWEGDDNDEELRLVMEASRQSHEEEMIQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----NGGGPDVAVLPSFGSLEARKSTGVGVGAGVHGHGSDAGGAVLPSTCGGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAGAQAPAWLGGWEDGEAVSFTGKGKGKGRCRD 1107
BLAST of mRNA_E-siliculosus-1a_M_contig95.17500.1 vs. uniprot
Match: D7G1U4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1U4_ECTSI) HSP 1 Score: 620 bits (1598), Expect = 1.850e-210 Identity = 550/795 (69.18%), Postives = 554/795 (69.69%), Query Frame = 2 Query: 266 MEEPYRLVYFVVTDQMRTTIAALRAVLKEGLQAPLRTPTAFIIDELHTLEVFRKQGLATSLTNFVKGIAEAHGVELYVSSELYIRSFWELRGFEEETSPEVLRACSLDLDDGFNTGASTTLLRAGAAYTEYQPANDDRLSMRTLAARGLLAIPSSAGSRDGVVDLTGGSRSLAEQDEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAIERSDGARHDGAVRGXXXXXXXXXXXXXXXXXXXXXXXXXXDADAAAAGITSSAAAAPTSSSARSQVRAGEERGAXXXXXXXXXXXXXXXXRRAGGIAEDGRXXXXXXXXXXRRLXXXRDESGSSTPGEPSPCGADGAASVGMELDGVGAGRHGNERRRSSSRDVGDDGNTASLTENVCITAARDVGSGLGVASETTAPHAPRPLDAAAAAALEGNSNLTASLPPSRPASPCPSSASSCSFTLGPVPPRSRTSTWNQQQPTAVGALGHRDPNSAMTISKENDHXXXXXXXXXXXXXXQGRKAVYQPPPRGLGARGQQHQHQAAFAGDGGGMIGALGGVVYSPTTAGGTGGADVPGLGPGRFGNVGVGGGGGGLISDGIEPSDVIMRDFGVGADGLDGGGRLDDKLIAVAGWEGDDNDEELRRVMEASRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSRKGVAAATPNGGGPDVAVLPSFGSLEARDSTGAGVXXXXXXXXSDASGAALPSTCGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQAPAWLGGWEDGEAVSFT 2650
MEEPYRLVYFVVTDQMRTTIAALRAVLKEGLQAPLRTPTAFIIDELHTLEVFRKQGLATSLTNFVKGIAEAHGVEL+VSSELYIRSFWELRGFEEETSPEVLRACSLDLDDGF TGA+TTLLRAGAAYTEYQPAND+RLSMRTLAARGLLAIPSS GSRDGVVDLTGGSRSLAEQDEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAIERSDGARHDGAVR XXXXXXXXXXXXXXXXXXXXXXXXXX ADAA GI SS PT VGALGHRDPN AMT SKEND XXXXXXXX GRKAVYQPPPRGLGARGQQHQHQAAFAGDGGGMIGALGGVVYSPTTAGGTGGADVPGLG GRFGNVGVG GGLISDGIEPSDVIMRDFGVGADGLDGGGRLDDKLIAVAGWEGDDNDEELRRVMEASRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LSRKGVAAATPNGGGPDVAVLPSFGSL AR+STG G XXXXX SDASGAALPSTCGG XXXXXXXXXXXXXXXXXXXXXXXXXX QAPAWLGGWEDGEAVSFT
Sbjct: 1 MEEPYRLVYFVVTDQMRTTIAALRAVLKEGLQAPLRTPTAFIIDELHTLEVFRKQGLATSLTNFVKGIAEAHGVELFVSSELYIRSFWELRGFEEETSPEVLRACSLDLDDGFKTGAATTLLRAGAAYTEYQPANDERLSMRTLAARGLLAIPSS-GSRDGVVDLTGGSRSLAEQDEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAIERSDGARHDGAVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXADAAXGGIASSX-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXPTTVGALGHRDPNRAMTASKEND-----PXXXXXXXXDHGRKAVYQPPPRGLGARGQQHQHQAAFAGDGGGMIGALGGVVYSPTTAGGTGGADVPGLGAGRFGNVGVGXXXGGLISDGIEPSDVIMRDFGVGADGLDGGGRLDDKLIAVAGWEGDDNDEELRRVMEASRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--LSRKGVAAATPNGGGPDVAVLPSFGSLGARESTGVGXXXXXXGHGSDASGAALPSTCGGAXXXXXXXXXXXXXXXXXXXXXXXXXXGA--QAPAWLGGWEDGEAVSFT 594 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig95.17500.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig95.17500.1 >prot_E-siliculosus-1a_M_contig95.17500.1 ID=prot_E-siliculosus-1a_M_contig95.17500.1|Name=mRNA_E-siliculosus-1a_M_contig95.17500.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=861bp MDGGASSTDAFRMPAEGEELTTPFSEFVVRYGHTPRLVRNMAAIAGVTAEback to top mRNA from alignment at E-siliculosus-1a_M_contig95:335100..343078- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig95.17500.1 ID=mRNA_E-siliculosus-1a_M_contig95.17500.1|Name=mRNA_E-siliculosus-1a_M_contig95.17500.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=7979bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:335100..343078- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig95:335100..343078- >mRNA_E-siliculosus-1a_M_contig95.17500.1 ID=mRNA_E-siliculosus-1a_M_contig95.17500.1|Name=mRNA_E-siliculosus-1a_M_contig95.17500.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=5166bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:335100..343078- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |