mRNA_E-siliculosus-1a_M_contig95.17498.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig95.17498.1 vs. uniprot
Match: D7G1U0_ECTSI (Altered inheritance of mitochondria protein 24, mitochondrial n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1U0_ECTSI) HSP 1 Score: 438 bits (1127), Expect = 1.790e-149 Identity = 225/227 (99.12%), Postives = 225/227 (99.12%), Query Frame = 2 Query: 557 MASKVEGQESQMVTFELEPGQVIRAEAGNLVFMEDGIEMDTNTGGGASSMFRRVITGQNMFVTDYVNRGDASGKVGLGTDVPSKIVRLPLAAYGGEVICQRGAFLAGSHTIDIQTEFTKMMAGFFGGEGFVLQRLTGKGDAFVKASGPLIQRELREGETLRVSSGSVVAFSTSVQYDVQTIPGFKNVVFGGEGLFITKLTGPGTVFLQGLPFDRMVDQIARRIPGGR 1237
MASKVEGQESQMVTFELEPGQVIRAEAGNLVFMEDGIEMDTNTGGGASSMFRRVITGQNMFVTDYVNRGDASGKVGLGTDVPSKIVRLPLAAYGGEVICQRGAFLAGSHTIDIQTEFTKMMAGFFGGEGFVLQRLTGKGDAFVKASGPLIQREL EGETLRVSSGSVVAFSTSVQYDVQTIPGFKNVVFGGEGLFITKL GPGTVFLQGLPFDRMVDQIARRIPGGR
Sbjct: 1 MASKVEGQESQMVTFELEPGQVIRAEAGNLVFMEDGIEMDTNTGGGASSMFRRVITGQNMFVTDYVNRGDASGKVGLGTDVPSKIVRLPLAAYGGEVICQRGAFLAGSHTIDIQTEFTKMMAGFFGGEGFVLQRLTGKGDAFVKASGPLIQRELSEGETLRVSSGSVVAFSTSVQYDVQTIPGFKNVVFGGEGLFITKLAGPGTVFLQGLPFDRMVDQIARRIPGGR 227
BLAST of mRNA_E-siliculosus-1a_M_contig95.17498.1 vs. uniprot
Match: A0A7S2WLF3_9STRA (Altered inheritance of mitochondria protein 24, mitochondrial n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WLF3_9STRA) HSP 1 Score: 301 bits (771), Expect = 6.350e-97 Identity = 141/231 (61.04%), Postives = 189/231 (81.82%), Query Frame = 2 Query: 545 LDFDMASKVEGQESQMVTFELEPGQVIRAEAGNLVFMEDGIEMDTNTGGGASSMFRRVITGQNMFVTDYVNRGDASGKVGLGTDVPSKIVRLPLAAYGGEVICQRGAFLAGSHTIDIQTEFTKMMA-GFFGGEGFVLQRLTGKGDAFVKASGPLIQRELREGETLRVSSGSVVAFSTSVQYDVQTIPGFKNVVFGGEGLFITKLTGPGTVFLQGLPFDRMVDQIARRIPGG 1234
+DF+ AS++EG +SQ+VT LEPGQV+RAE+G +++M DG+EM+T+TGGG + F+R +TGQN+F++DY +GD G V LGTD PSKI+RL L + G+++CQ+GA L SHT+DI+TEFTK + GFFGGEGFVLQ L G+GD FVKA G +I++EL GE LR+SSGS+VAFS +V+YD+Q +PGFKNV+FGGEGLF+T LTGPGT++LQG+P RM+ +IARR+P G
Sbjct: 49 IDFNTASRIEGSDSQIVTVRLEPGQVLRAESGGMMYMTDGVEMNTSTGGGVGAGFKRFLTGQNVFISDYTYKGDRFGIVALGTDFPSKIMRLSLPEWDGKIVCQKGALLCASHTVDIETEFTKKFSTGFFGGEGFVLQALLGEGDVFVKAGGSIIKKELNPGEQLRISSGSLVAFSQTVEYDIQMMPGFKNVLFGGEGLFVTTLTGPGTIWLQGMPPQRMISEIARRVPSG 279
BLAST of mRNA_E-siliculosus-1a_M_contig95.17498.1 vs. uniprot
Match: A0A4D9D418_9STRA (Altered inheritance of mitochondria protein 24, mitochondrial n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D418_9STRA) HSP 1 Score: 301 bits (772), Expect = 3.310e-96 Identity = 149/242 (61.57%), Postives = 195/242 (80.58%), Query Frame = 2 Query: 518 QDHLALAKPLDFDMASKVEGQESQMVTFELEPGQVIRAEAGNLVFMEDGIEMDTNTGGGASSMFRRVITGQNMFVTDYVNRGD--ASGKVGLGTDVPSKIVRLPLAAYGGEVICQRGAFLAGSHTIDIQTEFTKMM-AGFFGGEGFVLQRLTGKGDAFVKASGPLIQRELREGETLRVSSGSVVAFSTSVQYDVQTIPGFKNVVFGGEGLFITKLTGPGTVFLQGLPFDRMVDQIARRIPGG 1234
+D ALAKP+DFD+AS+VEG E+Q+V +LEPGQV+RAE G+L++M DG+E++T+ GGG S+ +R +TG+NMF++D+ G +SG V LGT+ PSKI+R+ LA YGG +ICQ+GAFL G+H ++ EFT+ +GFFGGEGFVLQRLTG GDAF+KA G LI+REL EGETLRV+SGS+V F+ SVQYDV+ + G KNV+FGGEGLF+T LTGPG+VFLQ +PFDR+V IA R+P G
Sbjct: 17 EDQTALAKPIDFDVASRVEGAETQIVVVDLEPGQVLRAETGSLLYMTDGVELETSLGGGLSAGLKRYMTGENMFISDFKYHGPEGSSGTVALGTEFPSKIIRVTLADYGGSLICQKGAFLCGTHLTGMEMEFTRSFKSGFFGGEGFVLQRLTGGGDAFIKAGGALIRRELSEGETLRVTSGSLVGFAPSVQYDVEMLKGVKNVMFGGEGLFVTTLTGPGSVFLQSMPFDRVVASIASRVPRG 258
BLAST of mRNA_E-siliculosus-1a_M_contig95.17498.1 vs. uniprot
Match: W7T4F9_9STRA (Altered inheritance of mitochondria protein 24, mitochondrial (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T4F9_9STRA) HSP 1 Score: 301 bits (770), Expect = 1.280e-95 Identity = 149/242 (61.57%), Postives = 193/242 (79.75%), Query Frame = 2 Query: 518 QDHLALAKPLDFDMASKVEGQESQMVTFELEPGQVIRAEAGNLVFMEDGIEMDTNTGGGASSMFRRVITGQNMFVTDYVNRGD--ASGKVGLGTDVPSKIVRLPLAAYGGEVICQRGAFLAGSHTIDIQTEFTKMM-AGFFGGEGFVLQRLTGKGDAFVKASGPLIQRELREGETLRVSSGSVVAFSTSVQYDVQTIPGFKNVVFGGEGLFITKLTGPGTVFLQGLPFDRMVDQIARRIPGG 1234
+D ALAKP+DFD+AS+VEG E+Q+V +LEPGQV+RAE G+L++M DG+E++T+ GGG S+ +R +TG+NMF++D+ G +SG V LGT+ PSKI+R+ LA YGG +ICQ+GAFL G+H ++ EFT+ GFFGGEGFVLQRLTG GDAF+KA G LI+REL EGETLRV+SGS+V F+ SVQYDV+ + G KNV+FGGEGLF+T LTGPG VFLQ +PFDR+V IA R+P G
Sbjct: 74 EDQTALAKPIDFDVASRVEGAETQIVVVDLEPGQVLRAETGSLLYMTDGVELETSLGGGLSAGLKRYMTGENMFISDFKYHGPEGSSGTVALGTEFPSKIIRVTLADYGGSLICQKGAFLCGTHLTGMEMEFTRSFKGGFFGGEGFVLQRLTGGGDAFIKAGGALIRRELSEGETLRVTSGSLVGFAPSVQYDVEMLKGVKNVMFGGEGLFVTTLTGPGAVFLQSMPFDRVVASIASRVPRG 315
BLAST of mRNA_E-siliculosus-1a_M_contig95.17498.1 vs. uniprot
Match: A0A1Z5KFL0_FISSO (Altered inheritance of mitochondria protein 24, mitochondrial n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KFL0_FISSO) HSP 1 Score: 296 bits (757), Expect = 6.750e-95 Identity = 145/251 (57.77%), Postives = 192/251 (76.49%), Query Frame = 2 Query: 485 TGVSDAPAATEQDHLALAKPLDFDMASKVEGQESQMVTFELEPGQVIRAEAGNLVFMEDGIEMDTNTGGGASSMFRRVITGQNMFVTDYVNRGDASGKVGLGTDVPSKIVRLPLAAYGGEVICQRGAFLAGSHTIDIQTEFTKMM-AGFFGGEGFVLQRLTGKGDAFVKASGPLIQRELREGETLRVSSGSVVAFSTSVQYDVQTIPGFKNVVFGGEGLFITKLTGPGTVFLQGLPFDRMVDQIARRIPGG 1234
T S P T D + + +P+DFD+A+K+EG ESQ+VT EL P QV+RAE+G ++++ +G+EM+T TGGG S+ FRR++TGQN F++DY G+ G+V LGTD PSKI+RL + YGG+++CQ+GA L SHTID+Q EFTK +GFFGGEGF+LQ LTG+GD F+KA G LI+R+LR GE LR+SSG +VAF++ + YDVQ + GF NV GGEGLFIT L GPGTV+LQG P RM+ +IARR+P G
Sbjct: 29 TFASQTPTLTSVDGV-VGEPIDFDLAAKIEGNESQIVTIELRPNQVLRAESGAMMYLTEGVEMNTTTGGGLSAGFRRMMTGQNFFISDYTYTGNTVGRVALGTDFPSKILRLNVPEYGGKLVCQKGALLCASHTIDVQMEFTKSFTSGFFGGEGFILQALTGEGDVFLKAGGTLIRRDLRAGEELRISSGCLVAFTSQIDYDVQMVKGFANVFAGGEGLFITTLKGPGTVWLQGQPPQRMISEIARRVPAG 278
BLAST of mRNA_E-siliculosus-1a_M_contig95.17498.1 vs. uniprot
Match: A0A7S4QQY9_9STRA (Altered inheritance of mitochondria protein 24, mitochondrial n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QQY9_9STRA) HSP 1 Score: 297 bits (760), Expect = 1.500e-94 Identity = 147/244 (60.25%), Postives = 189/244 (77.46%), Query Frame = 2 Query: 512 TEQDHLALAKPLDFDMASKVEGQESQMVTFELEPGQVIRAEAGNLVFMEDGIEMDTNTGGGASSMFRRVITGQNMFVTDYVNRGDAS--GKVGLGTDVPSKIVRLPLAAYGGEVICQRGAFLAGSHTIDIQTEFTKMM-AGFFGGEGFVLQRLTGKGDAFVKASGPLIQRELREGETLRVSSGSVVAFSTSVQYDVQTIPGFKNVVFGGEGLFITKLTGPGTVFLQGLPFDRMVDQIARRIPGG 1234
T D + P++FD+ASK+EG+ESQ+VT +EPGQV+RAE+G L++M DGIEM+T +GGG S+ F+R++TGQN+F++DY G++ G V LGTD PSKI+RL YGG+++CQ+GA L SHTIDI+ EF K AGFFGGEGFVLQ LTG GD FVKA G +I++EL GE LR+SSG +V FS V +DVQ +PGFKNV+FGGEGLF+T LTGPGTV+LQG P RM+ +IARR+P G
Sbjct: 95 TSSDGVVATHPINFDIASKIEGKESQIVTVAIEPGQVLRAESGALMYMTDGIEMNTTSGGGMSAGFKRLLTGQNVFISDYTYTGESGTRGLVALGTDFPSKIIRLNPNQYGGKIVCQKGALLCASHTIDIEMEFAKKFTAGFFGGEGFVLQALTGDGDVFVKAGGTMIRKELEAGEQLRISSGCLVCFSQGVDFDVQMMPGFKNVLFGGEGLFVTTLTGPGTVWLQGQPPQRMISEIARRVPSG 338
BLAST of mRNA_E-siliculosus-1a_M_contig95.17498.1 vs. uniprot
Match: A0A7S0C9P2_9STRA (Altered inheritance of mitochondria protein 24, mitochondrial n=6 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C9P2_9STRA) HSP 1 Score: 293 bits (751), Expect = 4.910e-94 Identity = 147/246 (59.76%), Postives = 191/246 (77.64%), Query Frame = 2 Query: 506 AATEQDHLALAKPLDFDMASKVEGQESQMVTFELEPGQVIRAEAGNLVFMEDGIEMDTNTGGGASSMFRRVITGQNMFVTDYVNRGD--ASGKVGLGTDVPSKIVRLPLAAYGGEVICQRGAFLAGSHTIDIQTEFTKMM-AGFFGGEGFVLQRLTGKGDAFVKASGPLIQRELREGETLRVSSGSVVAFSTSVQYDVQTIPGFKNVVFGGEGLFITKLTGPGTVFLQGLPFDRMVDQIARRIPGG 1234
AAT D + + P+DFD++SK+EG ESQ+VT ELEP QV+RAE+G +++M +G+ M+T TGGG S+ F+R++TGQN F++DY G+ G V LGTD PSKI+RL + YGG+++CQ+GA L SHTI+I+ EF K M AGFFGGEGFVLQ LTG GD FVKA G LI+R+L +GE LR+SSG +V FS V+YD+Q +PG KNV+FGGEGLF+T LTGPGTV+LQG P RM+ +IA R+PGG
Sbjct: 25 AATSADGV-VGLPIDFDVSSKIEGNESQIVTIELEPNQVLRAESGAMMYMTEGVTMETTTGGGMSAGFKRMMTGQNAFISDYRYDGEPGTKGLVALGTDFPSKIIRLDVKDYGGKIVCQKGALLCASHTINIEMEFAKKMTAGFFGGEGFVLQSLTGDGDVFVKAGGTLIRRDLGDGEILRISSGCLVGFSNGVEYDIQMMPGIKNVMFGGEGLFVTTLTGPGTVWLQGQPPSRMISEIASRVPGG 269
BLAST of mRNA_E-siliculosus-1a_M_contig95.17498.1 vs. uniprot
Match: A0A7S2GIV3_9STRA (Altered inheritance of mitochondria protein 24, mitochondrial (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GIV3_9STRA) HSP 1 Score: 293 bits (750), Expect = 9.030e-94 Identity = 150/248 (60.48%), Postives = 192/248 (77.42%), Query Frame = 2 Query: 497 DAPAATEQDHL-ALAKPLDFDMASKVEGQESQMVTFELEPGQVIRAEAGNLVFMEDGIEMDTNTGGGASSMFRRVITGQNMFVTDYVNRGDASGKVGLGTDVPSKIVRLPLAAYGGEVICQRGAFLAGSHTIDIQTEFTKMMA-GFFGGEGFVLQRLTGKGDAFVKASGPLIQRELREGETLRVSSGSVVAFSTSVQYDVQTIPGFKNVVFGGEGLFITKLTGPGTVFLQGLPFDRMVDQIARRIPGG 1234
D AT H + KP++FD A +VEG ++Q+V EL PGQ +RAE+GNL++M +G+EM+T GG SS F R+++G MF++++ G SG V LGTDVPSKI+R+ L YGGE+ICQ+GAFLAGS I+I+ FTK GFFGGEGFVLQ+L+G+GDA+VKA+G L+ ++L EGETLRV++GS+VAF S+ YDVQ + G KNVVFGGEGLFIT LTGPGTV+LQG+ FDRMVDQIARRIP G
Sbjct: 50 DKKVATTSPHADVVRKPINFDAAGRVEGGDAQIVHVELLPGQTLRAESGNLIYMTEGVEMETVALGGVSSGFARLLSGGTMFLSNFEYTGSGSGTVALGTDVPSKILRMHLPNYGGEIICQKGAFLAGSDDINIEMAFTKSFTTGFFGGEGFVLQKLSGEGDAYVKATGALVTKQLEEGETLRVTAGSLVAFEASIDYDVQMMKGMKNVVFGGEGLFITTLTGPGTVYLQGMQFDRMVDQIARRIPRG 297
BLAST of mRNA_E-siliculosus-1a_M_contig95.17498.1 vs. uniprot
Match: A0A7S1VUA2_9STRA (Altered inheritance of mitochondria protein 24, mitochondrial n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VUA2_9STRA) HSP 1 Score: 294 bits (752), Expect = 3.610e-93 Identity = 149/248 (60.08%), Postives = 192/248 (77.42%), Query Frame = 2 Query: 497 DAPAATEQDHLALAKPLDFDMASKVEGQESQMVTFELEPGQVIRAEAGNLVFMEDGIEMDTNTGGGASSMFRRVITGQNMFVTDYV-NRGDASGKVGLGTDVPSKIVRLPLAAYGGEVICQRGAFLAGSHTIDIQTEFTK-MMAGFFGGEGFVLQRLTGKGDAFVKASGPLIQRELREGETLRVSSGSVVAFSTSVQYDVQTIPGFKNVVFGGEGLFITKLTGPGTVFLQGLPFDRMVDQIARRIPGG 1234
DA A T D ++ +P++FD+A+K+EG ESQ+VT LEP QV+RAE+G ++FM DG+EM+T TGGG S+ F+R++TGQN F++DYV NR G+V LGTD PSKIVRL +A YGG++ CQ+GA L SHTIDI+ FTK AGFFG EGFVLQ L+G+GD FVKA G LI+++L EGE LR+S GS+VAFS V +DVQ + G KN +FGGEGLF+T LTGPGTV++QG P RM+ +IARR+P G
Sbjct: 105 DAGALTSSDGVS-GRPINFDVAAKIEGNESQIVTVTLEPNQVLRAESGAMMFMTDGVEMNTTTGGGLSTGFQRMLTGQNFFISDYVYNRPTGKGQVALGTDFPSKIVRLNVAEYGGKITCQKGALLCASHTIDIEMAFTKNFSAGFFGSEGFVLQALSGQGDVFVKAGGTLIRKDLEEGEDLRISGGSLVAFSNGVDFDVQMMKGVKNTLFGGEGLFVTTLTGPGTVWIQGQPPQRMIGEIARRVPSG 351
BLAST of mRNA_E-siliculosus-1a_M_contig95.17498.1 vs. uniprot
Match: A0A7S4J9C2_9STRA (Altered inheritance of mitochondria protein 24, mitochondrial n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J9C2_9STRA) HSP 1 Score: 291 bits (745), Expect = 3.170e-92 Identity = 142/237 (59.92%), Postives = 188/237 (79.32%), Query Frame = 2 Query: 533 LAKPLDFDMASKVEGQESQMVTFELEPGQVIRAEAGNLVFMEDGIEMDTNTGGGASSMFRRVITGQNMFVTDYVNRGD--ASGKVGLGTDVPSKIVRLPLAAYGGEVICQRGAFLAGSHTIDIQTEFTKMM-AGFFGGEGFVLQRLTGKGDAFVKASGPLIQRELREGETLRVSSGSVVAFSTSVQYDVQTIPGFKNVVFGGEGLFITKLTGPGTVFLQGLPFDRMVDQIARRIPGG 1234
+A P+DFD++SKVEG+ESQ+VT ++PGQ++RAE+G +++M G+ M+T TGGG S+ F+R++TGQN+F++DY G+ +G V LGTD PSKI+RL + YGG+++ Q+GA L +HTIDI+ EF K AGFFGGEGFVLQ LTG GD F+KA G LI+REL GE LR+SSG +VAFS V +D+QT+PGFKNV+FGGEGLF+T LTGPGTV+LQG P RM+ +IARR+P G
Sbjct: 102 VAVPIDFDVSSKVEGKESQIVTVAIKPGQILRAESGAMMYMTQGVSMNTTTGGGLSAGFKRMLTGQNVFISDYSYEGEPGTTGLVALGTDFPSKIIRLNVDQYGGKIVAQKGALLCATHTIDIEMEFAKKFSAGFFGGEGFVLQALTGDGDVFLKAGGTLIRRELSAGEQLRISSGCLVAFSDGVDFDIQTMPGFKNVMFGGEGLFVTTLTGPGTVWLQGQPPQRMISEIARRVPSG 338 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig95.17498.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig95.17498.1 >prot_E-siliculosus-1a_M_contig95.17498.1 ID=prot_E-siliculosus-1a_M_contig95.17498.1|Name=mRNA_E-siliculosus-1a_M_contig95.17498.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=333bp MTCRGLAMSARRLAVLRRGNGSTAVLAVGGSVAPPAANLPAFSAIASGERback to top mRNA from alignment at E-siliculosus-1a_M_contig95:296386..301354- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig95.17498.1 ID=mRNA_E-siliculosus-1a_M_contig95.17498.1|Name=mRNA_E-siliculosus-1a_M_contig95.17498.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=4969bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:296386..301354- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig95:296386..301354- >mRNA_E-siliculosus-1a_M_contig95.17498.1 ID=mRNA_E-siliculosus-1a_M_contig95.17498.1|Name=mRNA_E-siliculosus-1a_M_contig95.17498.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1998bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:296386..301354- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |