Homology
BLAST of mRNA_E-siliculosus-1a_M_contig95.17494.1 vs. uniprot
Match:
D7G1T8_ECTSI (Thioredoxin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1T8_ECTSI)
HSP 1 Score: 443 bits (1140), Expect = 6.280e-148
Identity = 246/275 (89.45%), Postives = 248/275 (90.18%), Query Frame = 3
Query: 516 PTGAAYAQAREQEKQRKKAIRDQRRAAEAATREEDAELAAQMKASARLNGEVDSEDEEXXXXXXXDVDSDDELLAGLDADPEICRIRESRLREMKRVHEARAENIAKGHGQYREIVQDEFLPEVTSSEKVVVHFYHKDFQRCKVMDMRLGELAPRHLETKFLRIDAEKAPFFVQKLQARGSFSKFEVKILPTVICFIDGVAVHNIIGFDGLTAGLPPDKLDEWPLSNLARELALAKAIIYSQRDAPEGTGPREQGGYTGAIRAGLNDGEFSDEDG 1340
PTGAAYAQAREQEKQRKKAIRDQRRAAEAATREEDAELAAQMKAS XXXXXXX DELLAGLDADPEICRIRESRLRE+KRVHEARAENIAKGHGQYREIVQDEFLPEVTSSEKVVVHFYHKDFQRCKVMDMRLGELAPRHLETKFLRIDAEKAPFFVQKLQ VKILPTVICFIDGVAVHNIIGFDGLTAGLPPDKLDEWPLSNLARELALAKAIIYSQRDAPEGTGPREQGGYTGAIRAGLNDG+FSDEDG
Sbjct: 52 PTGAAYAQAREQEKQRKKAIRDQRRAAEAATREEDAELAAQMKASXXXXXXXXXXXXXXXXXXXXXXXXXDELLAGLDADPEICRIRESRLRELKRVHEARAENIAKGHGQYREIVQDEFLPEVTSSEKVVVHFYHKDFQRCKVMDMRLGELAPRHLETKFLRIDAEKAPFFVQKLQ---------VKILPTVICFIDGVAVHNIIGFDGLTAGLPPDKLDEWPLSNLARELALAKAIIYSQRDAPEGTGPREQGGYTGAIRAGLNDGDFSDEDG 317
BLAST of mRNA_E-siliculosus-1a_M_contig95.17494.1 vs. uniprot
Match:
A0A835YQ77_9STRA (Thioredoxin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ77_9STRA)
HSP 1 Score: 239 bits (611), Expect = 2.200e-69
Identity = 137/274 (50.00%), Postives = 173/274 (63.14%), Query Frame = 3
Query: 516 PTGAAYAQAREQEKQRKKAIRDQRRAAEAATREEDAELAAQMKASARLNGEVDSEDEEXXXXXXXDVDSDDELLAGLDADPEICRIRESRLREMKRVHEARAENIAKGHGQYREIVQDEFLPEVTSSEKVVVHFYHKDFQRCKVMDMRLGELAPRHLETKFLRIDAEKAPFFVQKLQARGSFSKFEVKILPTVICFIDGVAVHNIIGFDGLTAGLPPDKLDEWPLSNLARELALAKAIIYSQRDAPEGTGPREQGGYTGAIRAGLNDGEFSDED 1337
PTG AY + +E+ +R AI+ Q A +A E+ EL Q++A L+ + D DDE L GLD DPE+ RIRE+RL ++K H+AR+ N+AKGHG+YRE+ QDEFLPEVTSS +VV HFYH DFQRCK+MDM L LAP HLE KF++I+AEKAPFFVQKLQ V++LP V+ F DG++V I GF+GL DEWP NLA+ LALAKAI Y+ DA + + +G IRAG D E SDED
Sbjct: 71 PTGLAYQREKEENAKRAAAIKSQEDALKAEQDAEEQELQQQLQAHRLLD----------------ESDDDDEYLEGLDDDPELERIREARLAQLKAAHDARSSNLAKGHGRYREVTQDEFLPEVTSSARVVAHFYHNDFQRCKIMDMHLERLAPAHLEAKFIKINAEKAPFFVQKLQ---------VRVLPCVVIFRDGISVAQIQGFEGLNEEQEKGTEDEWPTGNLAKRLALAKAIDYTASDALD---QMRKAQVSGVIRAGFGDAELSDED 316
BLAST of mRNA_E-siliculosus-1a_M_contig95.17494.1 vs. uniprot
Match:
A0A6G0X4T8_9STRA (Thioredoxin domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X4T8_9STRA)
HSP 1 Score: 186 bits (472), Expect = 6.450e-50
Identity = 98/178 (55.06%), Postives = 126/178 (70.79%), Query Frame = 3
Query: 717 DSDDELLAGLDADPEICRIRESRLREMKRVHEARAENIAKGHGQYREIVQDEFLPEVTSSEKVVVHFYHKDFQRCKVMDMRLGELAPRHLETKFLRIDAEKAPFFVQKLQARGSFSKFEVKILPTVICFIDGVAVHN-IIGFDGLTAGLPPDKLDEWPLSNLARELALAKAIIYSQRD 1247
D DDE L LD DP+ R+RE RL++++ ++ + EN+AKGHG+YREIVQDEFL EVTSS +V+VHFYH+DF+RCK+ DM L ++A RH+E K L+IDAEKAPFFV KL V++LPT+I F +GVA N IIGF+GLT G+ DE+P NLAR LA AI + D
Sbjct: 91 DDDDEFLDELDQDPDFMRLREMRLKQLQDQYKIKQENLAKGHGEYREIVQDEFLKEVTSSPRVIVHFYHRDFERCKITDMHLAKIAKRHIECKVLKIDAEKAPFFVSKLV---------VRVLPTIILFEEGVANSNRIIGFEGLTDGVRAGAEDEFPTGNLARRLAKIGAIDSADDD 259
BLAST of mRNA_E-siliculosus-1a_M_contig95.17494.1 vs. uniprot
Match:
A0A7S2RBF7_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RBF7_9STRA)
HSP 1 Score: 187 bits (474), Expect = 1.220e-49
Identity = 113/253 (44.66%), Postives = 154/253 (60.87%), Query Frame = 3
Query: 498 DLVVPKPTGAAYAQAREQEKQRKKAIRDQRRAAEAATREEDAELAAQMKASA-RLNGEVDSEDEEXXXXXXXDVDSDDELLAGLDA--DPEICRIRESRLREMKRVHEARAENIAKGHGQYREIVQDEFLPEVTSSEKVVVHFYHKDFQRCKVMDMRLGELAPRHLETKFLRIDAEKAPFFVQKLQARGSFSKFEVKILPTVICFIDGVAV--HNIIGFDGLTAGLPPDKLDEWPLSNLARELALAKAIIYSQ 1241
D V +PTGAAY A QE+ R++A+RDQ +AA A + DA+ A+++A +G D EDE +VDSD LL L++ DPE+ IR R++++K H A+ ENI KGHG EIVQDEFLP +TS+ + V HFYH DF RCK+MD L LA HLET FL+I+A+KAPFF +KL +++LPTV+CF DG ++IGF GL D+ D+WP + L +L I Y++
Sbjct: 58 DASVDRPTGAAYTAAAAQERDRRRALRDQEQAAAYAADQADAQREAEVRAHFFAQSGNSDEEDE----GGDEEVDSDXXLLDELESSEDPELLAIRNLRMQQLKSEHTAKMENIRKGHGSLTEIVQDEFLPRITSAARAVCHFYHNDFHRCKIMDKHLSILAQTHLETLFLKINADKAPFFCEKLN---------IRVLPTVVCFFDGKTKPEQHVIGFSGLAQEADTDQ-DDWPTTRLEAKLGEIGVIDYTK 296
BLAST of mRNA_E-siliculosus-1a_M_contig95.17494.1 vs. uniprot
Match:
A0A024ULN7_9STRA (Thioredoxin domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024ULN7_9STRA)
HSP 1 Score: 181 bits (459), Expect = 4.700e-48
Identity = 99/207 (47.83%), Postives = 136/207 (65.70%), Query Frame = 3
Query: 717 DSDDELLAGLDADPEICRIRESRLREMKRVHEARAENIAKGHGQYREIVQDEFLPEVTSSEKVVVHFYHKDFQRCKVMDMRLGELAPRHLETKFLRIDAEKAPFFVQKLQARGSFSKFEVKILPTVICFIDGVAVHN-IIGFDGLTAGLPPDKLDEWPLSNLARELALAKAIIYSQRDAPEGTGPREQGGYTGAIRAGLNDGEFSDE 1334
D +D LD DP+ R+RE RL++++ ++ +AEN+AKGHG YREIVQDEFL EVTSS +V+VHFYH+DF+RCK++DM LG A RH+E K L+IDAEKAPFF+ KL V++LPT+I F +G+A + I+GF+GLT +P DE+P NLAR LA A+ + D R+ +I+ GLN G +D+
Sbjct: 92 DDEDXFDXDLDQDPDFIRLREIRLKQLQEQYKLKAENLAKGHGDYREIVQDEFLKEVTSSARVLVHFYHRDFERCKIIDMHLGRFAKRHVEVKVLKIDAEKAPFFISKLV---------VRVLPTIIFFENGIANDDRIVGFEGLTDDVPLGHEDEFPTVNLARRLAKIGALNSADDDXXXXXXGRKD--KRSSIQQGLNRGYDADD 287
BLAST of mRNA_E-siliculosus-1a_M_contig95.17494.1 vs. uniprot
Match:
W4G8Q5_9STRA (Thioredoxin domain-containing protein n=6 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G8Q5_9STRA)
HSP 1 Score: 181 bits (459), Expect = 5.720e-48
Identity = 99/200 (49.50%), Postives = 135/200 (67.50%), Query Frame = 3
Query: 744 LDADPEICRIRESRLREMKRVHEARAENIAKGHGQYREIVQDEFLPEVTSSEKVVVHFYHKDFQRCKVMDMRLGELAPRHLETKFLRIDAEKAPFFVQKLQARGSFSKFEVKILPTVICFIDGVAVHN-IIGFDGLTAGLPPDKLDEWPLSNLARELALAKAIIYSQRD--APEGTGPREQGGYTGAIRAGLNDGEFSDE 1334
LD DP+ R+RE RL++++ ++ +AEN+AKGHG YREI+QDEFL EVTSS +V+VHFYH+DF+RCKVMDM LG +A RH+E K L+IDAEKAPFFV KL V++LPT+I F +G+A ++GF+GL LP + DE+P NLAR LA A+ S +D A + G + +I+ GLN +D+
Sbjct: 104 LDQDPDFMRLREVRLKQLQEQYKLKAENLAKGHGDYREILQDEFLKEVTSSARVLVHFYHRDFERCKVMDMHLGRIAKRHVEVKVLKIDAEKAPFFVAKLV---------VRVLPTIILFENGIANDTRVVGFEGLADDLPLGREDEFPTVNLARRLAKMGALNSSDQDEDAEDHDGSCRRQDNKPSIQQGLNRSYDADD 294
BLAST of mRNA_E-siliculosus-1a_M_contig95.17494.1 vs. uniprot
Match:
A0A4D9DBW2_9STRA (Thioredoxin domain-containing protein n=5 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DBW2_9STRA)
HSP 1 Score: 181 bits (459), Expect = 1.020e-47
Identity = 117/271 (43.17%), Postives = 154/271 (56.83%), Query Frame = 3
Query: 465 RERTNERTN---------ERDLVVPKPTGAAYAQA----REQEKQRKKAIRDQRRAAEAATREEDAELAAQMKASARLNGEVDSEDEEXXXXXXXDVDSDDELLAGLDADPEICRIRESRLREMKRVHEARAENIAKGHGQYREIVQDEFLPEVTSSEKVVVHFYHKDFQRCKVMDMRLGELAPRHLETKFLRIDAEKAPFFVQKLQARGSFSKFEVKILPTVICFIDGVAVHNIIGFDGLTAGLPPDKLDEWPLSNLARELALAKAIIYS 1238
R++ +ERT + D V PTG+AY Q R Q+ + + IR + A A R+E E+ +++ S L+ E D E E+ DPE IRE RL +K H+ +A+N++KGHGQYREI QDEFLPEVT S +V+VHFYHKDF RCK+MD L LAP H+ETKFL+I+AEKAPFFV KL VKILPTVI F D +A + GF+GL G + DE+P + +A L +AI Y+
Sbjct: 36 RQKNDERTAALQSGASVPDEDASVDGPTGSAYRQVEARKRAQQHRAQARIRKSKEQAVDAARQE--EIVQKLQESHLLSDEEDDEAEDSL-------------------DPEFKLIRERRLAALKAQHQEKADNMSKGHGQYREITQDEFLPEVTGSRRVLVHFYHKDFMRCKIMDKHLASLAPTHIETKFLKINAEKAPFFVGKLH---------VKILPTVIFFKDSIAEERLQGFEGLADGQSKGQEDEFPTARVAARLGKLEAIDYT 276
BLAST of mRNA_E-siliculosus-1a_M_contig95.17494.1 vs. uniprot
Match:
A0A067CJU1_SAPPC (Thioredoxin domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CJU1_SAPPC)
HSP 1 Score: 180 bits (456), Expect = 1.070e-47
Identity = 98/207 (47.34%), Postives = 135/207 (65.22%), Query Frame = 3
Query: 717 DSDDELLAGLDADPEICRIRESRLREMKRVHEARAENIAKGHGQYREIVQDEFLPEVTSSEKVVVHFYHKDFQRCKVMDMRLGELAPRHLETKFLRIDAEKAPFFVQKLQARGSFSKFEVKILPTVICFIDGVAVHN-IIGFDGLTAGLPPDKLDEWPLSNLARELALAKAIIYSQRDAPEGTGPREQGGYTGAIRAGLNDGEFSDE 1334
+ DD+ DP+ R+RE R+++++ + + EN+AKGHG YREIVQDEFL EVTSS +VVVHFYH+DF+RCK++DM + ++A RH+E KFL++DAEKAPFFV KL V++LPTVI F DG+A + I+GF+GLT GL K DE+P NLAR LA AI + +A ++ +I+ + G SDE
Sbjct: 90 EDDDDFEXXXXXDPDFLRLRELRMKQLQEQYRVKQENLAKGHGDYREIVQDEFLKEVTSSPRVVVHFYHRDFERCKIIDMHMAKVAKRHIECKFLKLDAEKAPFFVTKLV---------VRVLPTVIYFKDGIASDDRIVGFEGLTDGLRAGKEDEFPTVNLARRLAKIGAIDVADDEAEPTHSAKKS-----SIQVAYHSGYDSDE 282
BLAST of mRNA_E-siliculosus-1a_M_contig95.17494.1 vs. uniprot
Match:
K3X9E1_GLOUD (Thioredoxin domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X9E1_GLOUD)
HSP 1 Score: 174 bits (442), Expect = 1.180e-45
Identity = 97/192 (50.52%), Postives = 129/192 (67.19%), Query Frame = 3
Query: 711 DVDSDDE-LLAGLDADPEICRIRESRLREMKRVHEARAENIAKGHGQYREIVQDEFLPEVTSSEKVVVHFYHKDFQRCKVMDMRLGELAPRHLETKFLRIDAEKAPFFVQKLQARGSFSKFEVKILPTVICFIDGVAVHN-IIGFDGLTAGLPPDKL-----------DEWPLSNLARELALAKAIIYSQRD 1247
D DSDD+ LL+ LD DPE+ R+R++R+ ++K+ +E + E +AKGHG+YREI QDEFL EVTSS VVVHFYH DF+RCK+MDM LG LA H+E KFL+++AEKAPFFV+KL V++LPTV+CF DG+A + +IGFDGLTA ++ D +P LAR+L I + D
Sbjct: 103 DDDSDDDALLSELDHDPELERLRQARMNQLKQAYEQKQELLAKGHGEYREITQDEFLKEVTSSPLVVVHFYHNDFERCKIMDMHLGRLAKTHIECKFLKLNAEKAPFFVEKLM---------VRVLPTVVCFKDGIAFPSRVIGFDGLTADDEEEQSTFGSRGHLTSSDTFPTIALARKLVDIGVINHHDAD 285
BLAST of mRNA_E-siliculosus-1a_M_contig95.17494.1 vs. uniprot
Match:
A0A1V9ZHU8_9STRA (Thioredoxin n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZHU8_9STRA)
HSP 1 Score: 173 bits (438), Expect = 3.310e-45
Identity = 95/192 (49.48%), Postives = 126/192 (65.62%), Query Frame = 3
Query: 657 LNGEVDSEDEEXXXXXXXDVDSDDELLAGLDADPEICRIRESRLREMKRVHEARAENIAKGHGQYREIVQDEFLPEVTSSEKVVVHFYHKDFQRCKVMDMRLGELAPRHLETKFLRIDAEKAPFFVQKLQARGSFSKFEVKILPTVICFIDGVAVHN-IIGFDGLTAGLPPDKLDEWPLSNLARELALAKAI 1229
+N V E E + + DD+ + D E R+RE RL++++ + + EN+AKGHG YREI QDEFL EVTSS +VVVHFYH+DF+RCKV+DM L ++A RH+E KFL++DAEKAPFFV KL V++LPT+I F +G+A + IIGF+ LT G+ K DE+P NLAR LA AI
Sbjct: 67 INETVKPEHYENEQLQKKNEEDDDDFEXXXEEDAEFLRLRELRLKQLQEQYRVKQENLAKGHGDYREITQDEFLKEVTSSVRVVVHFYHRDFERCKVIDMHLSKIAKRHIECKFLKLDAEKAPFFVNKLV---------VRVLPTIIYFKEGIASDDRIIGFEELTQGVGVGKEDEFPTVNLARRLAKIGAI 249
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig95.17494.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90 )
Total hits: 25
0 1 Expect = 6.28e-148 / Id = 89.45 Expect = 2.20e-69 / Id = 50.00 Expect = 6.45e-50 / Id = 55.06 Expect = 1.22e-49 / Id = 44.66 Expect = 4.70e-48 / Id = 47.83 Expect = 5.72e-48 / Id = 49.50 Expect = 1.02e-47 / Id = 43.17 Expect = 1.07e-47 / Id = 47.34 Expect = 1.18e-45 / Id = 50.52 Expect = 3.31e-45 / Id = 49.48 Sequence D7G1T8_ECTSI A0A835YQ77_9STRA A0A6G0X4T8_9STRA A0A7S2RBF7_9STRA A0A024ULN7_9STRA W4G8Q5_9STRA A0A4D9DBW2_9STRA A0A067CJU1_SAPPC K3X9E1_GLOUD A0A1V9ZHU8_9STRA Pages
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Start 1 Stop 1 Cds size 1020 Model size 2237 Exons 7 Ec32 ortholog Ec-07_004190.1 Ec32 ortholog description Thioredoxin-like fold Hectar predicted targeting category other localisation Best eggNOG OG NA|NA|NA Best tax level Eukaryota COG Functional cat. CO EggNOG OGs COG0526@1,KOG1672@2759 EggNOG free text desc. queuosine biosynthetic process GOs GO:0000226,GO:0000278,GO:0000280,GO:0000281,GO:0000910,GO:0000911,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006355,GO:0006357,GO:0006457,GO:0006725,GO:0006807,GO:0006996,GO:0006997,GO:0007000,GO:0007010,GO:0007017,GO:0007049,GO:0007329,GO:0008092,GO:0008150,GO:0008152,GO:0008616,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009371,GO:0009373,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010033,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0015631,GO:0016043,GO:0016049,GO:0018130,GO:0019219,GO:0019222,GO:0019236,GO:0019438,GO:0022402,GO:0030865,GO:0031122,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031683,GO:0032506,GO:0034404,GO:0034641,GO:0034654,GO:0040007,GO:0042221,GO:0042455,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043622,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0044877,GO:0045893,GO:0045935,GO:0045944,GO:0046019,GO:0046116,GO:0046483,GO:0048285,GO:0048487,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051211,GO:0051252,GO:0051254,GO:0051301,GO:0051716,GO:0055086,GO:0060255,GO:0061640,GO:0065007,GO:0070887,GO:0071310,GO:0071444,GO:0071704,GO:0071840,GO:0080090,GO:0097435,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901522,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659,GO:1902410,GO:1902680,GO:1903047,GO:1903506,GO:1903508,GO:2000112,GO:2001141 Seed eggNOG ortholog 2880.D7G1T8 Seed ortholog evalue 3.4e-122 Seed ortholog score 444.9 Taxonomic scope Eukaryota
Relationships
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622936515.2596722-UTR-E-siliculosus-1a_M_contig95:257045..257368 1622936515.2596722-UTR-E-siliculosus-1a_M_contig95:257045..257368 Ectocarpus siliculosus Ec864m_EcPH12_78m male UTR E-siliculosus-1a_M_contig95 257046..257368 + 1696251112.5596852-UTR-E-siliculosus-1a_M_contig95:257045..257368 1696251112.5596852-UTR-E-siliculosus-1a_M_contig95:257045..257368 Ectocarpus siliculosus Ec864m_EcPH12_78m male UTR E-siliculosus-1a_M_contig95 257046..257368 + 1622936515.533564-UTR-E-siliculosus-1a_M_contig95:262574..263468 1622936515.533564-UTR-E-siliculosus-1a_M_contig95:262574..263468 Ectocarpus siliculosus Ec864m_EcPH12_78m male UTR E-siliculosus-1a_M_contig95 262575..263468 + 1696251112.6478302-UTR-E-siliculosus-1a_M_contig95:262574..263468 1696251112.6478302-UTR-E-siliculosus-1a_M_contig95:262574..263468 Ectocarpus siliculosus Ec864m_EcPH12_78m male UTR E-siliculosus-1a_M_contig95 262575..263468 +
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622936515.281223-CDS-E-siliculosus-1a_M_contig95:257368..257713 1622936515.281223-CDS-E-siliculosus-1a_M_contig95:257368..257713 Ectocarpus siliculosus Ec864m_EcPH12_78m male CDS E-siliculosus-1a_M_contig95 257369..257713 + 1696251112.5711603-CDS-E-siliculosus-1a_M_contig95:257368..257713 1696251112.5711603-CDS-E-siliculosus-1a_M_contig95:257368..257713 Ectocarpus siliculosus Ec864m_EcPH12_78m male CDS E-siliculosus-1a_M_contig95 257369..257713 + 1622936515.2976394-CDS-E-siliculosus-1a_M_contig95:258814..258907 1622936515.2976394-CDS-E-siliculosus-1a_M_contig95:258814..258907 Ectocarpus siliculosus Ec864m_EcPH12_78m male CDS E-siliculosus-1a_M_contig95 258815..258907 + 1696251112.580576-CDS-E-siliculosus-1a_M_contig95:258814..258907 1696251112.580576-CDS-E-siliculosus-1a_M_contig95:258814..258907 Ectocarpus siliculosus Ec864m_EcPH12_78m male CDS E-siliculosus-1a_M_contig95 258815..258907 + 1622936515.3173437-CDS-E-siliculosus-1a_M_contig95:259874..259961 1622936515.3173437-CDS-E-siliculosus-1a_M_contig95:259874..259961 Ectocarpus siliculosus Ec864m_EcPH12_78m male CDS E-siliculosus-1a_M_contig95 259875..259961 + 1696251112.5912275-CDS-E-siliculosus-1a_M_contig95:259874..259961 1696251112.5912275-CDS-E-siliculosus-1a_M_contig95:259874..259961 Ectocarpus siliculosus Ec864m_EcPH12_78m male CDS E-siliculosus-1a_M_contig95 259875..259961 + 1622936515.383631-CDS-E-siliculosus-1a_M_contig95:260298..260387 1622936515.383631-CDS-E-siliculosus-1a_M_contig95:260298..260387 Ectocarpus siliculosus Ec864m_EcPH12_78m male CDS E-siliculosus-1a_M_contig95 260299..260387 + 1696251112.6051044-CDS-E-siliculosus-1a_M_contig95:260298..260387 1696251112.6051044-CDS-E-siliculosus-1a_M_contig95:260298..260387 Ectocarpus siliculosus Ec864m_EcPH12_78m male CDS E-siliculosus-1a_M_contig95 260299..260387 + 1622936515.4026363-CDS-E-siliculosus-1a_M_contig95:261280..261416 1622936515.4026363-CDS-E-siliculosus-1a_M_contig95:261280..261416 Ectocarpus siliculosus Ec864m_EcPH12_78m male CDS E-siliculosus-1a_M_contig95 261281..261416 + 1696251112.6158483-CDS-E-siliculosus-1a_M_contig95:261280..261416 1696251112.6158483-CDS-E-siliculosus-1a_M_contig95:261280..261416 Ectocarpus siliculosus Ec864m_EcPH12_78m male CDS E-siliculosus-1a_M_contig95 261281..261416 + 1622936515.429846-CDS-E-siliculosus-1a_M_contig95:262069..262219 1622936515.429846-CDS-E-siliculosus-1a_M_contig95:262069..262219 Ectocarpus siliculosus Ec864m_EcPH12_78m male CDS E-siliculosus-1a_M_contig95 262070..262219 + 1696251112.625387-CDS-E-siliculosus-1a_M_contig95:262069..262219 1696251112.625387-CDS-E-siliculosus-1a_M_contig95:262069..262219 Ectocarpus siliculosus Ec864m_EcPH12_78m male CDS E-siliculosus-1a_M_contig95 262070..262219 + 1622936515.5154412-CDS-E-siliculosus-1a_M_contig95:262454..262574 1622936515.5154412-CDS-E-siliculosus-1a_M_contig95:262454..262574 Ectocarpus siliculosus Ec864m_EcPH12_78m male CDS E-siliculosus-1a_M_contig95 262455..262574 + 1696251112.635796-CDS-E-siliculosus-1a_M_contig95:262454..262574 1696251112.635796-CDS-E-siliculosus-1a_M_contig95:262454..262574 Ectocarpus siliculosus Ec864m_EcPH12_78m male CDS E-siliculosus-1a_M_contig95 262455..262574 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig95.17494.1
>prot_E-siliculosus-1a_M_contig95.17494.1 ID=prot_E-siliculosus-1a_M_contig95.17494.1|Name=mRNA_E-siliculosus-1a_M_contig95.17494.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=340bp
MHASRDPPELILPHSGLTPTSPPCFHQPTQPPTRPSPPSTIFFCNTQRER back to top mRNA from alignment at E-siliculosus-1a_M_contig95:257046..263468+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig95.17494.1 ID=mRNA_E-siliculosus-1a_M_contig95.17494.1|Name=mRNA_E-siliculosus-1a_M_contig95.17494.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=6423bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:257046..263468+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)CGAGACGACAGCGTTCTTACACCACAATGTTCCGTTTCTCTTGGTTTCTT
TTGCGTTTCTTCTCCCGTAAGCCCCGTCGATTGGCGGAGTACGTACCAAG
CAGTTTTCTCGCTGATGGCGTTGAGGGGGGAAGAACGGGAAGTGCTTCTC
AAGAACCCCTTTAGGAAACATAAATACGAAGACAGAAAGACTACCCATTC
GAGATATGACCCCTTTTCGCCGCAAGAGCCTCGTTTTATTTTTTGCGATC
GCCGAACACGCTTTTCCTTTCTCGCGTGACGACCACGGCTGCGAGTTAAC
GCCAACAGGACCGCGTCTACGAC ATGCATGCATCTCGCGATCCACCAGAA
CTCATCCTCCCTCACTCAGGTCTCACGCCCACCTCCCCACCCTGCTTCCA
CCAACCTACCCAACCCCCCACGCGACCGTCCCCTCCTTCCACGATTTTCT
TTTGCAACACGCAACGCGAACGAACGAACGAACGAACGAACGAACGCGAT
CTTGTTGTGCCGAAGCCCACCGGGGCAGCTTACGCGCAGGCCCGGGAGCA
GGAGAAGCAGAGGAAGAAGGCCATCAGGGACCAGAGACGAGCGGCGGAGG
CGGCCACGAGGGAGGAAGACGCGGAGCTGGCGGCGCAGATGAAGGCCTCG
GCACGGCTGAACGGGGAG GTGCGAAAAAAACAGCATTAATGTTTGTGGTC
TTCACGCGCTGTTTTGGCACCCTAAACATCCCAGTTACTGGCATTGTAGA
GACTTTCAAAAATAGGACGCGGTTTTTAGTGTTTTTGCGGCCTTTTTTTT
TTCGTTTCAACGTTGTCCAAAACGCGCCGCGGACCCGCGCTTGGGTGTGG
GCTAGGGTTAACGTTAGGGTTGGGCTGGGTTGGGTCCACCCGTACCTAAC
CTATCGTGCAAAATATTCACCCTGCACCTGAAACACTCGGTCTTGTTTCT
GGTATGTATTTTTATGGTGCCAACGTCGTGAAGGTCCCCCTCGAAAAATG
AAGTCACCGGCAGTGTCGGCGGCGCGGTAGACGGTGAACCGGGGCACCGG
CGACCTAAGATGGACAGTCGCCCATTGACAGGACGTCATTGATCTTGTCC
CCCGAGAGCCGGGGTCTCTGTTGCTTCGTCCCTCGATGACGCGGTTTCTT
ATAGTCCGGTTTCTTGACACTGCTGTGGCCATGCGAGCTGACGACGACTA
GTGGAACATGAGGAGCTCTTCGTGCCTTTTTCGAACAGGCATATGTTCGC
GGCATTGTATGGACATGTCACCACTGCTGGCTGATTGCGCGGGTTTATGT
TGCAGACGATGCCCAAGCTGGGTGTGCTGTGTTTGTTTTCCACTTCATTC
AGCCTTGTGACCCCCGACGGAGCGGGGGGGGGGGTTGACCGACCGCAGAC
ACAGTCCCGCCTGCCGCACACGCCGTGAATAAGGAAATACAAGGAAAACA
CGTCCAATTTCAGATCCCACCGCAGCCTCCTTCCTTCTGGCGACAGAGAA
ATACACGGCTCGAAAACCGAATCAGTTACGTTCGGCGAAGACGTTCGTCT
GTCGCTTTGTCAAGAGCAAGTAGCCTAGCCCCCAAAAACACCACTTACGC
CGTAAAATGGTTTTGTTCGGCTGCCTGCCGCGTGCTGTGATCGCGATCGC
GATCGCCGCTACGGTAATGGACCATCGCTACGGTGATGGATCACCGCTAC
GGTAATGAGCCAGCGCTACGGTGATGGTGATGGATTTGGTCCCTTCCCGT
TCCGTTCCGGCCGCTGCAGGTGGATTCCGAAGACGAAGAAGGGGGGGATG
GTGGAAGCGACGATGTGGATAGCGACGACGAGCTACTCGCTGGGCTGGAC
GCTGATCCGGAG GTACGGAACTTTTGGGGAACATCACCTGGCGACGGTGG
TGGTGGTGGTGGTGGCGGTGGTGTTGTCTCGTTTTTTCTAGTTCAGTATA
CTTTTGTCCTGTCTTCCCTTTTGCTTGTATTGTAACGAGGGTTCGTTCCC
ATGGAGAGCCTGCTTGTGCCTGCAAATTGCGGACATCGGCTTCCATACTC
CTGACTGCCCCTTCCCTCCCCCAAACAAAGACAACTCGCCCTTTGGTGTG
CTGTATTTGTAGCGTGGCTCACTGCGACTGCTGGCACGATTCGTTCTTGT
ACCTTTGATGGAGAGTCGCACGTGCTTGTTTTATGTACACCAACAAAGAT
TACGCAGACGAACATGCTGAAACTGTACGCGGCTATGTCCGCGGTAGCGG
GAAGGACATGTGTTCCCACCGGAACACTGAAGAAGAGCAGAAAGAACAAG
GCACCATCTTTTGGAGCGATGTGTTAAAACTTTCTTTCGTCCCCCCACCC
TCCAGACTCGCGCCGGCCCGTTGCATCCCTTTAGCCCAGCTACAACGGTG
TGCTTGCTGCGTATCGAATGCACTGCTGTTTTGGTCGTACCTCCGCCATC
CATCCAGAGCCGAACAATCCGGTTCGGTGTATTCGTTGAATATTTTTGGC
TTCGCGGCGCTCTAGCCCCTCCTCTTGGTGCATGGATTGTCCAAGGCCAT
CATTTTCGCGCTTGTTGCTCCCCCCCCCCCCAATCAACCAACCAAGCTGT
CATGCGTTGAAGATCGCGCGTGCCTTGGGTTTGTTTTTGTCGCGGCGACA
TCGCCCACCCCCCCCCCCACGCATGGCATCATGTCGTGTTTTTGCGATGA
TGTTTCTTTAGCCTGCTGACGCGCCATCGTTGTGTGTTGTCGGCTCCTTC
TTCTTGGTGTGCTTGTCCTCTTCTCGTGTGCAATCGTCGGCACTTCTTCA
ACGGCCGTGTGCTGTGTGGTGGTGACAAGATTTGCCGCATCCGCGAGAGC
CGCCTGCGCGAGATGAAGCGAGTGCACGAGGCGCGAGCGGAGAACATCGC
CAAGGGCCACGGCCAG GTGTGTGCTGCGTGCTGCTGCCGCTGCCGCCGTT
GCTGCCGCCGCTGCTGCTGCTGCCGCTGTTGATGTTTGATGTTGCCGATT
GAAGCTGACGTTGCTGGCCCTGAAAAACCTTAAAAGCAGTGCAGGTCATC
GCACGCCCCCGAGACCAACATCGCTACTGCTGTCACAGGAGTCGTGGGCT
GGGTCGGCTGCGAATGTTGGCACACCCACCCACCCCGCCGTTGTGCATAG
CAGTGCTCATCGCTCATCGCCGCGCATGCCACCATCGCTTCCATTCGCCC
GATCTCGTGTCTTGTACCGTCTACTATGCTGTGCTGTATACATATCGCCG
CAGTACCGTGAGATCGTCCAGGATGAGTTCCTGCCGGAGGTGACCTCGAG
CGAGAAGGTCGTCGTGCACTTCTACCACAAGGACTTCCAACG GTGAGTTG
GCACCTGCCTGCTCGACGTCGGCGCATCGCGCAAGCACAGCACCGCACCG
CACCGCACCGCACCGCACCGCACCGCACCGCACCGCACCGCACCGCACCG
CACCGCACTGCACTGCACCGCACCTCAAGAGCTGTGTGCCGAGGCGCGTG
TGCCGCGCACAGTAAGCAACGCACGTGTACGTGACACCATGCTCAAAAAG
TCAAATTTCGAACGCGTTTCTCAAGGCTTGTATTTTTTTTTCTTTTTTTG
TGCCGGGCGTCGTGAGAAAACAACGCGTCCTTGGAGACGTGTTCATGGAA
AGAATGCTTGTTTTGCCGTTGGTGAAGACCTGGCAGACGAGCAGCGCTGT
TCGATGAAGGCGTGGGCCTTTTCGCTGCTCATTTTTTTTTCCGCGTGTTG
TCGTGAGGTGCAAGTGCACCCGTGCTTGGACAAATACGATGATGTATGTA
GCGATTTCGGCTCCACCGAAGCACAGCAGTAGTCGCCCCTCCTGGGCTTA
CCTTTCCAACTTTCTTTTTCGGGGAAAAATGAAGCACGTGTGGTGAATGA
AGGCGACCCTTTTTTTTGTTGTTGAAGATATTTTGCTATGCCTGTGTGTT
TGTCGTGTGGAATCGACTACAAGATGTAGCCGAGCACGCAATTGTGCCTG
ATGCCGGATGCGCGGACATCCAACCTCCGGGGACCAACTCTGCCAGTCCA
GCGCGCGAACACCCATCGAACACACCGACCAACCCCCGCTACCCCTCTCC
TTCGCTGCCGACACTGTTTTGTTTTTTTTAAGAACATATACCCATACACA
GAAAGCCTTTGCAGTGAGCGGCGAAAGAAACAGCTGGATACTGGAAGACA
TCACCTCTTGTTGTTGTGCGTGTGTGCGCGGGCAGGTGCAAGGTGATGGA
CATGCGCCTTGGGGAGCTGGCGCCTAGGCACCTGGAGACGAAGTTCTTGA
GGATAGACGCAGAGAAGGCGCCCTTCTTCGTCCAGAAGCTCCAGGCAAGG
GGTTCGTTTTCGAAATTCGAA GTTCGGGAGCGGTTTTGGGGGGCCTGGTG
AAACAACGGGCATAACTTGAACAATATTTCCGATTTGAGTGCGAAAAAAA
TCGAAACGAGGCCAGACTTCGGATTCTGTTGTGTTGAGGAGAGTAATTTT
TCGAGATTTCGGAGGATTTCGACAAAATGTGCTGCGTTTGAAATTGCTCT
TCAGGGTTTATCTCTGTTTGTGGGTAGATACCCTATTTTTTGCTCTTTTT
GACCTATACGCCATGACCCCCCAACTACAGAGTCTCGCGCAACCGAGGCC
AAAGGATTGGTTTGTGCTTTGAGACGCCTGTATGGAATGCAATCGTCAAA
CCTCCAAGGCATGCGAAAAATATTAGAGTACGCAACCATGCGTTTTTTTC
TTGTGGTAGGGTTTGATGAGTTGGGTACCGCCGGCCTGCATTATATCGCA
AACTCGGGGAGGACATGCTGCAGAAACATGAAGTTCGGCCTAGACTACCC
TGTTCGTCCTTGCCGTTGGTTGAATGCCATGGTTGGCGTCGGGTCTCTTT
CTCAAGTGCAGCTTGATGGTGTTATTTTCACCAACGTCTGCCTCCAACAA
AGATCAAAGGGTGCCCCCCCCGACAATATTTTGTTTCGCGTACCCCCCCC
TCCCTCGTCCGTCGTCACTTGCAGGTGAAGATCCTTCCGACGGTGATCTG
CTTCATCGACGGGGTGGCGGTGCACAACATCATCGGTTTCGACGGCCTGA
CCGCTGGCCTCCCGCCAGACAAGCTGGACGAGTGGCCGCTCTCCAACCTC
GCCAGGGAGCTCGCGCTCGCCAAG GTATTTTCACCGCTCGCTGTTCTCAC
GGAGGATGTATGCTGTTTTTTGCGCACATGAGCCGAATTGTTCATCTACA
TACATGGTTGAAGAGCACCCGCTGACTTCTGCCCGCGATTTCTTTTGCAC
CCAGAATCACGACACAACGCACGTGTAGCGTCAACGCCCACCGTCATGTT
GCACTTCCTCTCCTTCGTGATGCGCTATGTTGTACTTATATTTGCTTTCC
ATCAACCAGGCGATAATTTACAGCCAGCGCGATGCACCAGAGGGCACGGG
TCCCCGGGAGCAGGGCGGCTACACGGGGGCGATCCGGGCGGGCTTGAACG
ACGGCGAATTTTCGGACGAGGATGGTTGA AGAAAAACAGCCAGCCGTAGT
ATATAGGCGGAATTGTTGGGTGAATGGAGCAATAATAGTAGTGTTAGGGA
ACCGCGCGCGCCGCCGAACCTTTGGTGGTTCAGGCTTGGCTTTTTTCGCG
CTGTCAGTTGTTGTTCCTTGAGGACAACCTCTAATGGGTTGACCAAGTGA
TTTGACAGGGGTTGGTTTGGTTTGAGGGCGCGTGTTGTGGATTGCCGGTC
TTTTCATGTCTACCGTATCAAGAGCAGCACTGATAGCTTCTTGTGCTTGA
TGCGTGCGTCCGGTGATATAGCGTAGCTGTACGCCCGAGTTGTACAATGT
GTCAGCATTCACCGGGATCGTTATGCCGGTGCCCCGTCTTGTTTTAGCAC
GCGTTTCCCTCTTTCTCGGTTCTAGTGGTGTATGGTGTATGGTGTATGGA
GGCGTGTATGCAGGGACGTTAGCGAGATGACTCTCTACTGAAAGCGATTT
GAGTCATGACTGAGCGCGATGCTCGCCGCGCCCCCCTAAAAAAAGAGAGG
TGTATTCCAGACAAAACTGCGGGTGGTGCACCATAGTTGTAGTTCAGGCC
TGTGTCCTTGCAAGAATGCAACAAGCAATACCCTACGCAGTTAGTTATGA
ATGGCCTTGGCTGTACGTGCCTTCAGATTTGGATGCATACATACCCAAGG
GTGCAAGGACAATCAACGGGATGCGAAAAAAAAACATAACGAATTAAGGG
CGAGACGGTGACGTATGACTCCTGGGACAAGTCGAAAGAGGGTTTCTTTA
CACTTGATTTAAGTCTGCACACCAAGCCTATCTGTCGGACTTAGTGTGGG
TGCGTCGTTCCATGAAAAGCCTTTGTAGTGAATCTGAAGTAGCAAACAAC
ATGTGGTCGATACCGTAGGTGAC back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig95:257046..263468+
>mRNA_E-siliculosus-1a_M_contig95.17494.1 ID=mRNA_E-siliculosus-1a_M_contig95.17494.1|Name=mRNA_E-siliculosus-1a_M_contig95.17494.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=2040bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:257046..263468+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male) back to top