mRNA_E-siliculosus-1a_M_contig95.17492.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig95.17492.1 vs. uniprot
Match: D7G1T6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1T6_ECTSI) HSP 1 Score: 1231 bits (3184), Expect = 0.000e+0 Identity = 658/738 (89.16%), Postives = 669/738 (90.65%), Query Frame = 1 Query: 1 MAWRPGPRPSLGLGSSDYDERDPWIQRFISKTDDGELSLDVNAMNGLETAAGAIFVDLIRQQVERPVSPADSTISSWMPGQDMGRQRQRHPAAMRVDPPMAQYEPFRRTYVSDPSCVPQLRFANVPDTGADHDKREAGRHWRRSGRTWSRVPRFRKGETAFTHDPNYKPPHAVVDKWYMTEAGPKVSLAGRVEESRWQSCHSMQSGREPRKPTRSRLPQDQQEKPRPPGPASYHMRDPWEVREVCGAVPNSRVFCKPVRRVLPQTSAFTVAPGGSCDMSVDTSAAPPPXXXXXXXXXGDDENSAFRLDEPQPRPATAGVAATVSSATASTGAARDLPLHSRRVSRTQQRSARFGGGVGRPGTKTSPGRHQSGNNLLPPAAAAVRAARARPAAAVGPSSFARAERPHIADEGRRKEESYGKKVVRLLTGDGDVLVTVTRRRASAWGDVDPPPDGATGSSKSGAVVAGPRAATTIDRERQAGGXXXXXXXXXXXXXXXXXNASGGWKTAGGGSGRDALPSTNAIRKRQPAAPGVHPPATRESSLESRARGLLPDDLTASPPVYREPGKSELPVIFRATSAPIVRAVPSLRAAERLRWGRAAAPANQRGAISSPDGNESRNAVSLEEGGWRQELCEEEAAHMARVVRSAENIVAKSGRRGFGGGGGG-------DVGPSKSGVRTRIPAPSGLDLGQILAGGDDSAEMPHTGLNDGSCDFVSSTIWSGGETAEASAPTEAR 2193
MAWRPGPR SLGLGSS+YDERDPWIQRFISKTDDGELSLDVNAMNGLETAAGAIFV+LIRQQ ERPVSPADSTISSWMPGQDMGRQRQRHPAAMRVDPPMAQYEPFRRTYVSDPSCVPQLRFANVPDTGADHDKREA RHWRRSGRTWSRVPRFRKGETAFTHDPNYKPPHAVVDKWYMTEAGPKVSLAGRVEESRWQSCHSMQSGREPRKPTRSRLPQDQQEKPRPPGPASYHMRDPWEVREVCGAVPNSRVFCKPVRRVLPQTSAF VAPGGSCDMSVDTSAAPPP GDDENSAFR DEPQ RPATAGVAATVSSATA TGAARDLPLHSRRVSRTQQRSARFGGGVGRPGTKTSPGRHQSGNNLLPPAAAAVRAARARPAAAVGPSSFARAERPHIADEGRRKEESYGKKVVRLLTGDGDVLVTVTRRRASAWGDV+P AGPRAATTIDR XXXXXXXXXXX NA GGWKT+ GGSGRDALPST+AIRKRQP APGVHPPATRESSLESRA+GLLPDDLTASPPVYREPGKSELPVIFRATSAPIVRAVPSLRAAERLRWGRA A ANQRGAISSPDGNESR+AV LEEGGWRQELCEEEAAH++RVVRSAE+IVAKS R FGG DV SKSGVRTRIPAPSG DLGQ LAGGDDSAEMP TGLNDGSCD+VSSTIWSGGETAE SAPTEAR
Sbjct: 1 MAWRPGPRSSLGLGSSEYDERDPWIQRFISKTDDGELSLDVNAMNGLETAAGAIFVELIRQQAERPVSPADSTISSWMPGQDMGRQRQRHPAAMRVDPPMAQYEPFRRTYVSDPSCVPQLRFANVPDTGADHDKREASRHWRRSGRTWSRVPRFRKGETAFTHDPNYKPPHAVVDKWYMTEAGPKVSLAGRVEESRWQSCHSMQSGREPRKPTRSRLPQDQQEKPRPPGPASYHMRDPWEVREVCGAVPNSRVFCKPVRRVLPQTSAFAVAPGGSCDMSVDTSAAPPPSAA------GDDENSAFRSDEPQARPATAGVAATVSSATALTGAARDLPLHSRRVSRTQQRSARFGGGVGRPGTKTSPGRHQSGNNLLPPAAAAVRAARARPAAAVGPSSFARAERPHIADEGRRKEESYGKKVVRLLTGDGDVLVTVTRRRASAWGDVEPXXXXXXXXXXXXXXXAGPRAATTIDRXXXXXXXXXXXXXXXXXAVGRGRNAPGGWKTSDGGSGRDALPSTSAIRKRQPTAPGVHPPATRESSLESRAKGLLPDDLTASPPVYREPGKSELPVIFRATSAPIVRAVPSLRAAERLRWGRAPARANQRGAISSPDGNESRHAVPLEEGGWRQELCEEEAAHISRVVRSAESIVAKSSGRSFGGXXXXXXXXXXXDVERSKSGVRTRIPAPSGQDLGQNLAGGDDSAEMPQTGLNDGSCDYVSSTIWSGGETAEVSAPTEAR 732
BLAST of mRNA_E-siliculosus-1a_M_contig95.17492.1 vs. uniprot
Match: A0A6H5KSY3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSY3_9PHAE) HSP 1 Score: 92.0 bits (227), Expect = 8.450e-19 Identity = 44/56 (78.57%), Postives = 47/56 (83.93%), Query Frame = 1 Query: 1 MAWRPGPRPSLGLGSSDYDERDPWIQRFISKTDDGELSLDVNAM---NGLETAAGA 159
MAWRPGPR SLGLG+SDYDERDPWIQRFISKTDDGELSLDVN N + AAG+
Sbjct: 1 MAWRPGPRSSLGLGASDYDERDPWIQRFISKTDDGELSLDVNVSSRRNTMPCAAGS 56 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig95.17492.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig95.17492.1 >prot_E-siliculosus-1a_M_contig95.17492.1 ID=prot_E-siliculosus-1a_M_contig95.17492.1|Name=mRNA_E-siliculosus-1a_M_contig95.17492.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=732bp MAWRPGPRPSLGLGSSDYDERDPWIQRFISKTDDGELSLDVNAMNGLETAback to top mRNA from alignment at E-siliculosus-1a_M_contig95:240769..246632+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig95.17492.1 ID=mRNA_E-siliculosus-1a_M_contig95.17492.1|Name=mRNA_E-siliculosus-1a_M_contig95.17492.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=5864bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:240769..246632+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig95:240769..246632+ >mRNA_E-siliculosus-1a_M_contig95.17492.1 ID=mRNA_E-siliculosus-1a_M_contig95.17492.1|Name=mRNA_E-siliculosus-1a_M_contig95.17492.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=4392bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:240769..246632+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |