mRNA_E-siliculosus-1a_M_contig95.17487.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig95.17487.1 vs. uniprot
Match: D7G1T0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1T0_ECTSI) HSP 1 Score: 299 bits (765), Expect = 2.160e-102 Identity = 148/157 (94.27%), Postives = 153/157 (97.45%), Query Frame = 1 Query: 1 MILAAYFVGVNALSFAMLAEDKASSKGWIPFLGRIPEALLHQVELAGGSPGSFLGQRVFRHKISKLAYQRGFSQVLAVQIAASIAWGYFHGPSWALLGVGLAPAVLFAATARRMNTLKHQDNARNKWNQPWQRPVDVSSSARRRRNTDIPKRATPFK 471
MILAAYFVG NALSFAMLAEDKASSKGWIPFLGRIPEALLHQVEL GGSPGSFLGQRVFRHKISKLAYQR FSQVLAVQIAASIAWGYFHGPSWALLG+GLAPAV+FAATARRM+TLKH+DNARN+WNQPWQRPVDVSSSARRRRNTDIPKRATP K
Sbjct: 1 MILAAYFVGANALSFAMLAEDKASSKGWIPFLGRIPEALLHQVELVGGSPGSFLGQRVFRHKISKLAYQRSFSQVLAVQIAASIAWGYFHGPSWALLGMGLAPAVMFAATARRMSTLKHRDNARNRWNQPWQRPVDVSSSARRRRNTDIPKRATPSK 157
BLAST of mRNA_E-siliculosus-1a_M_contig95.17487.1 vs. uniprot
Match: A0A6H5K9I2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9I2_9PHAE) HSP 1 Score: 282 bits (721), Expect = 1.070e-95 Identity = 142/157 (90.45%), Postives = 150/157 (95.54%), Query Frame = 1 Query: 1 MILAAYFVGVNALSFAMLAEDKASSKGWIPFLGRIPEALLHQVELAGGSPGSFLGQRVFRHKISKLAYQRGFSQVLAVQIAASIAWGYFHGPSWALLGVGLAPAVLFAATARRMNTLKHQDNARNKWNQPWQRPVDVSSSARRRRNTDIPKRATPFK 471
MILAA+FVGVNALSFAMLAEDKASSKG IPFLGRIPEALLHQVELAGGSPGSFLGQRVF+HKISKLAYQRGFSQVLA QIAA+IAWGYFHGPSWALLGVGLAP V+FAATARRMNTLKHQD+ RN+W+QPWQRPVDVSS ARRRRNT PKRATP+K
Sbjct: 1 MILAAFFVGVNALSFAMLAEDKASSKGLIPFLGRIPEALLHQVELAGGSPGSFLGQRVFQHKISKLAYQRGFSQVLAAQIAANIAWGYFHGPSWALLGVGLAPVVMFAATARRMNTLKHQDSTRNRWHQPWQRPVDVSS-ARRRRNTATPKRATPYK 156
BLAST of mRNA_E-siliculosus-1a_M_contig95.17487.1 vs. uniprot
Match: A0A1V5MWG7_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium ADurb.Bin412 TaxID=1852905 RepID=A0A1V5MWG7_9BACT) HSP 1 Score: 65.1 bits (157), Expect = 1.140e-10 Identity = 33/83 (39.76%), Postives = 50/83 (60.24%), Query Frame = 1 Query: 4 ILAAYFVGVNALSFAMLAEDKASSKGWIPFLGRIPEALLHQVELAGGSPGSFLGQRVFRHKISKLAYQRGFSQVLAVQIAASI 252
+L +Y ++ ++F M DKA + + GR+PE +LH + LAGG+PG+F GQ VFRHK K ++ F + +QI A I
Sbjct: 32 LLVSYLASISGITFLMYGFDKARA---VKNQGRVPELILHGLALAGGTPGAFFGQLVFRHKTRKWKFRIVFILIFLLQIGALI 111
BLAST of mRNA_E-siliculosus-1a_M_contig95.17487.1 vs. uniprot
Match: A0A6A7YTS5_9PSED (DUF1294 domain-containing protein n=1 Tax=Pseudomonas helleri TaxID=1608996 RepID=A0A6A7YTS5_9PSED) HSP 1 Score: 63.2 bits (152), Expect = 6.260e-10 Identity = 35/77 (45.45%), Postives = 46/77 (59.74%), Query Frame = 1 Query: 19 FVGVNALSFAMLAEDKASSKG--WIPFLGRIPEALLHQVELAGGSPGSFLGQRVFRHKISKLAYQRGFSQVLAVQIA 243
+V + L+F M DK +K W RIPE +LH +EL GG PG+ L Q+VFRHK KL+YQ F ++AV A
Sbjct: 35 YVLASGLAFGMYGYDKRQAKAGEW-----RIPEKVLHAIELLGGWPGALLAQQVFRHKTRKLSYQLWFWLIVAVHQA 106
BLAST of mRNA_E-siliculosus-1a_M_contig95.17487.1 vs. uniprot
Match: UPI00166A5F5A (DUF1294 domain-containing protein n=1 Tax=Arenimonas maotaiensis TaxID=1446479 RepID=UPI00166A5F5A) HSP 1 Score: 62.0 bits (149), Expect = 8.080e-10 Identity = 36/85 (42.35%), Postives = 52/85 (61.18%), Query Frame = 1 Query: 7 LAAYFVGVNALSFAMLAEDK-ASSKGWIPFLGRIPEALLHQVELAGGSPGSFLGQRVFRHKISKLAYQRGFSQVLAVQIAASIAW 258
LA + +N + A+ A DK A+ +G R+PEA LH + L GG PG++LGQR+FRHK K A+QR F+ +A+ +A W
Sbjct: 4 LAIGLLALNLCALALYAWDKHAAHRG----TRRVPEARLHLLALLGGWPGAWLGQRLFRHKTRKAAFQRRFTACVALNLAILGFW 84
BLAST of mRNA_E-siliculosus-1a_M_contig95.17487.1 vs. uniprot
Match: A0A7V2IL43_9BACT (DUF1294 domain-containing protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7V2IL43_9BACT) HSP 1 Score: 61.2 bits (147), Expect = 1.810e-9 Identity = 34/83 (40.96%), Postives = 47/83 (56.63%), Query Frame = 1 Query: 16 YFVGVNALSFAMLAEDKASSKGWIPFLGRIPEALLHQVELAGGSPGSFLGQRVFRHKISKLAYQRGFSQVLAVQIAASIAWGY 264
Y + ++FA DK + I GRIPEA+LH + LAGGS G+ GQ +FRHKI KL + + ++AVQ+ W Y
Sbjct: 7 YLTALTLVTFAFFGFDKHRA---IRGRGRIPEAVLHLLALAGGSLGALAGQILFRHKIRKLYFTAILAMIVAVQLGCIAWWIY 86
BLAST of mRNA_E-siliculosus-1a_M_contig95.17487.1 vs. uniprot
Match: A0A2M9E2T7_9GAMM (CSD domain-containing protein n=1 Tax=Xanthomonadaceae bacterium NML91-0213 TaxID=2032582 RepID=A0A2M9E2T7_9GAMM) HSP 1 Score: 61.6 bits (148), Expect = 1.160e-8 Identity = 34/82 (41.46%), Postives = 50/82 (60.98%), Query Frame = 1 Query: 28 VNALSFAMLAEDKASSKGWIPFLGRIPEALLHQVELAGGSPGSFLGQRVFRHKISKLAYQRGFSQVLAVQIAASIAWGYFHG 273
++ L++ + A DK +++ R+PEA LH +ELAGG PG+ L QRV HK K +YQ F V+A+ +AA +AW G
Sbjct: 126 LSLLTWLVYAADKRAAR---ERRRRVPEAHLHALELAGGWPGALLAQRVLHHKSRKRSYQVVFWIVVALNVAAVVAWPELAG 204
BLAST of mRNA_E-siliculosus-1a_M_contig95.17487.1 vs. uniprot
Match: A0A0S2EWG8_9HYPH (Uncharacterized protein n=2 Tax=unclassified Aureimonas TaxID=2615206 RepID=A0A0S2EWG8_9HYPH) HSP 1 Score: 59.3 bits (142), Expect = 1.210e-8 Identity = 32/83 (38.55%), Postives = 48/83 (57.83%), Query Frame = 1 Query: 7 LAAYFVGVNALSFAMLAEDKASSKGWIPFLGRIPEALLHQVELAGGSPGSFLGQRVFRHKISKLAYQRGFSQVLAVQIAASIA 255
+A Y +N L+FA +A DKA ++ RIPEA+L Q+ L GGSPG+ + Q+V RHK K ++ +LA + +A
Sbjct: 11 IALYLAAINLLAFAAMALDKAKARA---SRRRIPEAMLLQLALIGGSPGTLVAQQVLRHKTRKEPFRSRLLAILAFHLLVLVA 90
BLAST of mRNA_E-siliculosus-1a_M_contig95.17487.1 vs. uniprot
Match: UPI0004B9FAD1 (DUF1294 domain-containing protein n=1 Tax=Deinococcus pimensis TaxID=309888 RepID=UPI0004B9FAD1) HSP 1 Score: 58.9 bits (141), Expect = 1.900e-8 Identity = 32/71 (45.07%), Postives = 45/71 (63.38%), Query Frame = 1 Query: 1 MILAAYFVGVNALSFAMLAEDK--ASSKGWIPFLGRIPEALLHQVELAGGSPGSFLGQRVFRHKISKLAYQ 207
++LAA+ VG++A++FA+ A DK A+ GW R PE LH + L GG PG+ L QR RHK KL ++
Sbjct: 15 VLLAAWTVGLSAVTFAVYARDKRAAARGGW-----RTPEVTLHLLALCGGWPGALLAQRTLRHKTRKLIFR 80
BLAST of mRNA_E-siliculosus-1a_M_contig95.17487.1 vs. uniprot
Match: A0A191YT64_9PSED (Uncharacterized protein n=3 Tax=Pseudomonas TaxID=286 RepID=A0A191YT64_9PSED) HSP 1 Score: 59.3 bits (142), Expect = 3.020e-8 Identity = 36/76 (47.37%), Postives = 48/76 (63.16%), Query Frame = 1 Query: 7 LAAYFVGVNALSFAMLAEDKASSK--GWIPFLGRIPEALLHQVELAGGSPGSFLGQRVFRHKISKLAYQRGFSQVL 228
LAAY + V+ L+F + DK ++ W RIPE LLH VELAGG PG+ L Q+VFRHK KL++Q F ++
Sbjct: 52 LAAYGI-VSGLAFLLYWSDKRKARLDRW-----RIPENLLHAVELAGGWPGALLAQQVFRHKTRKLSFQLLFWMIV 121 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig95.17487.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig95.17487.1 >prot_E-siliculosus-1a_M_contig95.17487.1 ID=prot_E-siliculosus-1a_M_contig95.17487.1|Name=mRNA_E-siliculosus-1a_M_contig95.17487.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=158bp MILAAYFVGVNALSFAMLAEDKASSKGWIPFLGRIPEALLHQVELAGGSPback to top mRNA from alignment at E-siliculosus-1a_M_contig95:201492..203371- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig95.17487.1 ID=mRNA_E-siliculosus-1a_M_contig95.17487.1|Name=mRNA_E-siliculosus-1a_M_contig95.17487.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=1880bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:201492..203371- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig95:201492..203371- >mRNA_E-siliculosus-1a_M_contig95.17487.1 ID=mRNA_E-siliculosus-1a_M_contig95.17487.1|Name=mRNA_E-siliculosus-1a_M_contig95.17487.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=948bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:201492..203371- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |