mRNA_E-siliculosus-1a_M_contig95.17486.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig95.17486.1 vs. uniprot
Match: D7G1S9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1S9_ECTSI) HSP 1 Score: 1157 bits (2993), Expect = 0.000e+0 Identity = 603/635 (94.96%), Postives = 612/635 (96.38%), Query Frame = 3 Query: 2280 MFCRFVEGKKFDGQESLEGFLRTLSRAGRSEVPVAAGGGAAAHNERPPYAHDRAYSSDLMERRQRMSVEGGAWETVGSARWGARGLRRASTQFTHNTSPPNHSDLVPSTTKTTVGRRATVLPQAHGGVAVNKRFSGVTGTVETHRSADVRTSARSTGGGLHLSTPRSRNSTIKWEVASSGGEPKTPTRDRSGPRGGGFVVRALSSFDGNGSGTLSSAEFVSAASKVAGLDMQIEQEWGDVLATKFAATTRRGEAGGGVRWLGGSGEGTDTHTLDIAALADFLRPKHFSLSVMTPFGLVELSLEDQFLTLGDLREVIVNKMFWRQHNCQVRRSDRDNFTLSRYYGTLPLDTESAGQRRRLVLDVLRPGELLFVTDRVAHHARQETQRSIPRFQYTMGMQRQQAGRAATPAIVKHASCKGMSIATKPPPCGPVPKRRWSSAKTATTGSTGAGELPRRSSCIPSSPPARRQFVDDGTAAAEGSIPERPTTSVVRASAELLSQTATRLVSEPPSRDRSYARRQTGDGGSASSNGGGSRGARGDLAGKSSDGGAEEKRGRKTASFHDPSPAREPPSTKGTRTRKTAVEAPFVFDWSAGQVERWVGETMELGCYREAFQAKKAGWEGFLAYGRGKHLRRTR 4184 MFCRFVEGKKFDGQESLEGFLRTLSRAGRSEVPVAAGGGAAAHNERP YAHDRAYSSDLMERRQRMSVEGGAWETVGSARWGARGLRRASTQFTHNTSPPNHSDLVPSTTKT+VGRRATVLPQAHGGVAV KRFSGVTGTVETHRSADV TSARSTGGGLHLST RSRNST+KWEVASSGGE KTPTRDRSGPRGGGFVVRALSS DGNGSGTLS AEFVSAASKVAGLDMQIEQEWGDVLATKFAATT RGEAGGGVRWLGGSGEGTDTH LDIAAL DFLRPKHFSLSVMTPFGLVELSLEDQFLTLGDLREVI+NKMFWRQHNCQVRRSDRDNFTLSRYYGTLPLDTESAGQRRRLVLDVLRPGELLFVTDRVAHH RQETQRSIPRFQY MGMQRQQ G+AATPAIVKHA CKGMSIATKPPPCG VPKRRWSSAKTATTGSTGAGELPRRSSCIPSSPPARRQFVDDGTAAAEGSIPERPTTSVVRASAE+LSQTATR+VSEPPSRDRSYARR+ GD GS SSNGGGSR ARGDLAGKSSDGGAEEKRGRKTASFHDPSPAR PPSTKGT+ KTAVEA FVFDWSAGQVERWVGETMELGCYREAFQAKKAGWEGFLAYGRG+HLRRTR Sbjct: 1 MFCRFVEGKKFDGQESLEGFLRTLSRAGRSEVPVAAGGGAAAHNERPAYAHDRAYSSDLMERRQRMSVEGGAWETVGSARWGARGLRRASTQFTHNTSPPNHSDLVPSTTKTSVGRRATVLPQAHGGVAVKKRFSGVTGTVETHRSADVGTSARSTGGGLHLSTSRSRNSTLKWEVASSGGELKTPTRDRSGPRGGGFVVRALSSVDGNGSGTLSPAEFVSAASKVAGLDMQIEQEWGDVLATKFAATTHRGEAGGGVRWLGGSGEGTDTHALDIAALDDFLRPKHFSLSVMTPFGLVELSLEDQFLTLGDLREVIINKMFWRQHNCQVRRSDRDNFTLSRYYGTLPLDTESAGQRRRLVLDVLRPGELLFVTDRVAHHTRQETQRSIPRFQYMMGMQRQQPGKAATPAIVKHARCKGMSIATKPPPCGAVPKRRWSSAKTATTGSTGAGELPRRSSCIPSSPPARRQFVDDGTAAAEGSIPERPTTSVVRASAEILSQTATRIVSEPPSRDRSYARRRAGDTGSTSSNGGGSRVARGDLAGKSSDGGAEEKRGRKTASFHDPSPARGPPSTKGTQ--KTAVEASFVFDWSAGQVERWVGETMELGCYREAFQAKKAGWEGFLAYGRGEHLRRTR 633 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig95.17486.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 1 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig95.17486.1 >prot_E-siliculosus-1a_M_contig95.17486.1 ID=prot_E-siliculosus-1a_M_contig95.17486.1|Name=mRNA_E-siliculosus-1a_M_contig95.17486.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=1292bp MGRNNRRKNKWKGDNAIETGLPHRRRWGSGYGRGTPADGVDDPELDIRPDback to top mRNA from alignment at E-siliculosus-1a_M_contig95:192323..199193+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig95.17486.1 ID=mRNA_E-siliculosus-1a_M_contig95.17486.1|Name=mRNA_E-siliculosus-1a_M_contig95.17486.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=6871bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:192323..199193+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig95:192323..199193+ >mRNA_E-siliculosus-1a_M_contig95.17486.1 ID=mRNA_E-siliculosus-1a_M_contig95.17486.1|Name=mRNA_E-siliculosus-1a_M_contig95.17486.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=7752bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:192323..199193+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |