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Homology
BLAST of mRNA_E-siliculosus-1a_M_contig95.17485.1 vs. uniprot
Match: A0A6H5KBW0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBW0_9PHAE) HSP 1 Score: 266 bits (680), Expect = 1.350e-75 Identity = 143/180 (79.44%), Postives = 145/180 (80.56%), Query Frame = 1 Query: 724 EALPQGSGGDPWASSKRQLPLPLQPLAGRCNFRGCGRISVFRCGRCRAAFYCNRDHQRSDWAWHRRVCDEGKGEPPPPLARLVLPAQRQKAVGWADSTRVVPASAADTGGGG------CSPPAWEGGGAGGSXXXXXXRVGGVRHGXGGGFGSGANSAAFRENRSRLEAAMASAAHSPAA 1245
EA P SGGDPWASSKRQLPLPLQPLAGRCNF GCG+ISVFRC RCRAAFYCNRDHQRSDWAWHRRVCDEGKGEPPPPLARLVLPAQRQKAVGWADST+VVPA CS PAWEGG AGGS RV GVRHGX GANSAAFRENRSRLEAAMASAAHSPAA
Sbjct: 219 EATPHCSGGDPWASSKRQLPLPLQPLAGRCNFEGCGQISVFRCRRCRAAFYCNRDHQRSDWAWHRRVCDEGKGEPPPPLARLVLPAQRQKAVGWADSTKVVPAXXXXXXXXXXXXXXXCSSPAWEGGSAGGSGAKGSGRVEGVRHGXXXXXXXGANSAAFRENRSRLEAAMASAAHSPAA 398
BLAST of mRNA_E-siliculosus-1a_M_contig95.17485.1 vs. uniprot
Match: D7G1S8_ECTSI (Egl nine homolog 1 (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1S8_ECTSI) HSP 1 Score: 198 bits (504), Expect = 1.290e-58 Identity = 102/119 (85.71%), Postives = 105/119 (88.24%), Query Frame = 1 Query: 835 ISVFRCGRCRAAFYCNRDHQRSDWAWHRRVCDEGKGEPPPPLARLVLPAQRQKAVGWADSTRVVPASAADTG--GGGCSPPAWEGGGAGGSXXXXXXRVGGVRHGXGGGFGSGANSAAF 1185
IS+FRCGRCRAAFYCNRDHQRSDWAWHRRVCDEGKGEPPPPLARLVLPAQ+QKAVGWADSTRVVPASAA GGG SPPAWEGGGAG + RVGGVRHG GGGFGSGANSAAF
Sbjct: 30 ISLFRCGRCRAAFYCNRDHQRSDWAWHRRVCDEGKGEPPPPLARLVLPAQKQKAVGWADSTRVVPASAASAADRGGGFSPPAWEGGGAGDNGAKGSGRVGGVRHGGGGGFGSGANSAAF 148
BLAST of mRNA_E-siliculosus-1a_M_contig95.17485.1 vs. uniprot
Match: A0A0C2CTP1_9DELT (MYND-type domain-containing protein n=1 Tax=Enhygromyxa salina TaxID=215803 RepID=A0A0C2CTP1_9DELT) HSP 1 Score: 53.1 bits (126), Expect = 2.530e-5 Identity = 18/34 (52.94%), Postives = 26/34 (76.47%), Query Frame = 1 Query: 826 CGRISVFRCGRCRAAFYCNRDHQRSDWAWHRRVC 927
CG+ ++ RC RC A FYC ++HQR DWA H+++C
Sbjct: 63 CGKSTIQRCARCAAVFYCGKEHQRRDWARHKKLC 96
BLAST of mRNA_E-siliculosus-1a_M_contig95.17485.1 vs. uniprot
Match: A0A6A6JJX3_9PLEO (MYND-type zinc finger protein samB n=1 Tax=Westerdykella ornata TaxID=318751 RepID=A0A6A6JJX3_9PLEO) HSP 1 Score: 56.6 bits (135), Expect = 4.160e-5 Identity = 22/37 (59.46%), Postives = 28/37 (75.68%), Query Frame = 1 Query: 826 CGRISVFRCGRCRAAFYCNRDHQRSDWAWHRRVCDEG 936
CG+ + +CGRC+ A+YCNRD QRSDW HR+ C EG
Sbjct: 12 CGKSASLQCGRCKNAWYCNRDCQRSDWKTHRKDCSEG 48
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 0 |
| Cds size | 1368 |
| Model size | 1368 |
| Exons | 2 |
| Ec32 ortholog | Ec-07_004300.1 |
| Ec32 ortholog description | Zinc finger, MYND-type |
| Hectar predicted targeting category | other localisation |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622936508.5415874-CDS-E-siliculosus-1a_M_contig95:188104..188638 | 1622936508.5415874-CDS-E-siliculosus-1a_M_contig95:188104..188638 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig95 188105..188638 - |
| 1696251109.8927488-CDS-E-siliculosus-1a_M_contig95:188104..188638 | 1696251109.8927488-CDS-E-siliculosus-1a_M_contig95:188104..188638 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig95 188105..188638 - |
| 1622936508.5597334-CDS-E-siliculosus-1a_M_contig95:189085..189919 | 1622936508.5597334-CDS-E-siliculosus-1a_M_contig95:189085..189919 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig95 189086..189919 - |
| 1696251109.9032543-CDS-E-siliculosus-1a_M_contig95:189085..189919 | 1696251109.9032543-CDS-E-siliculosus-1a_M_contig95:189085..189919 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig95 189086..189919 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig95.17485.1 >prot_E-siliculosus-1a_M_contig95.17485.1 ID=prot_E-siliculosus-1a_M_contig95.17485.1|Name=mRNA_E-siliculosus-1a_M_contig95.17485.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=456bp
MPAVSDGPLTGAGGGGGGGGKERGSVSLRIRRRRLSFDGAVDRVPRWWEA
AGAEEERGGAIGAAVSGVTAAAAAQQRKRANTWCSSSGSTGSATAVSTSL
LVRAEEEEEEEEEEEMHCRADERNNTEEAAATFVTAAIEAAAAAAAAAAA
AAAAAAAAAAEGEEATSTTASGGGGGGAAAAGEGTTSIPMVASTAKESDS
GAAAAAVAVPTRTTTPATIVSGEAASSEAAAAAEEAVAASSEALPQGSGG
DPWASSKRQLPLPLQPLAGRCNFRGCGRISVFRCGRCRAAFYCNRDHQRS
DWAWHRRVCDEGKGEPPPPLARLVLPAQRQKAVGWADSTRVVPASAADTG
GGGCSPPAWEGGGAGGSGAKGSGRVGGVRHGGGGGFGSGANSAAFRENRS
RLEAAMASAAHSPAAAIDGGGGGGGFDPTHVRTSRGGASWTVPASNDNGG
GAGSAA back to topmRNA from alignment at E-siliculosus-1a_M_contig95:188105..189919- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_M_contig95.17485.1 ID=mRNA_E-siliculosus-1a_M_contig95.17485.1|Name=mRNA_E-siliculosus-1a_M_contig95.17485.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=1815bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:188105..189919- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGCCTGCCGTAAGCGACGGCCCCCTCACCGGCGCTGGCGGCGGCGGTGG
CGGCGGCGGTAAGGAGAGGGGGAGCGTCAGTCTCCGTATCCGTCGTCGGA
GACTTAGTTTCGACGGCGCTGTGGATCGCGTCCCACGGTGGTGGGAGGCC
GCCGGGGCGGAGGAGGAGCGAGGCGGCGCAATCGGAGCCGCCGTTTCCGG
TGTTACTGCTGCTGCTGCTGCTCAGCAGCGTAAGCGGGCGAACACGTGGT
GCTCGTCGTCAGGCTCGACCGGGAGCGCGACAGCAGTATCGACGTCTTTG
CTGGTGCGGGCGGAAGAGGAGGAGGAAGAAGAAGAAGAAGAAGAAATGCA
TTGCAGAGCTGACGAAAGGAATAACACGGAAGAAGCGGCAGCGACCTTTG
TGACGGCGGCGATAGAAGCAGCCGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGAAGGAGAAGAAGCAACGTC
AACGACCGCATCAGGAGGAGGAGGAGGAGGAGCAGCAGCAGCAGGAGAAG
GAACGACGTCCATCCCTATGGTCGCCAGCACTGCCAAGGAAAGCGACTCG
GGGGCAGCAGCAGCAGCAGTTGCGGTACCCACAAGGACGACGACACCCGC
GACCATCGTCTCCGGAGAGGCGGCAAGCAGCGAAGCAGCAGCAGCGGCAG
AAGAAGCCGTCGCGGCAAGCAGCGAGGCCCTCCCCCAAGGGAGCGGCGGC
GACCCGTGGGCGAGCAGCAAGAGGCAGCTGCCACTTCCTCTCCAGCCTCT
CGCCGGAAGGTGCAACTTCAGGGGCTGTGGCCGGGTATGTATGTAGAACA
TACCGGCGGGTGCTGCTGTGTTTATGGGATATGTCAGCGAGAGTCGATGT
GACGCTCGCCGCCGCTGTTTCGGCCTATCGGCGTCCGGGCGTATACCGTA
CGACATCCGTTGGCAGCAGCGTGATTTTTTGTCTTTTTTTCAGTCTTCGC
CCTTGAAATTTCTGGACCAAAGTGTTCAATGTACGATATGGAAACCCCCG
CGGGACCTGCGCGCACCCGATGTACGCGCGAGATAGCCTCAGCGTTTCCG
TCGTTTTTCGTACGGCGCCCCAGCTTCGATACTGCGATATGGACGCTCCG
CAGCTGCGGTGAGAGACAAACCCGTAGGCTGCCCGTCCCCTTCACCGAGG
AGGGGGGCAACGTGGTTGGTGGTGCCAGTATGCTTACCCCCCTTCCTCAC
AATACCTCTTGCGTTTACTCCCTCCGTCCAGATATCGGTGTTCCGGTGCG
GGCGGTGCCGAGCGGCGTTCTACTGCAACCGAGACCACCAGCGGAGCGAC
TGGGCGTGGCACCGGCGGGTCTGTGACGAGGGAAAGGGCGAGCCCCCCCC
CCCGCTCGCGCGGCTGGTCCTCCCGGCGCAGAGGCAGAAGGCTGTTGGCT
GGGCCGACTCCACCCGGGTGGTACCGGCGTCGGCGGCGGACACGGGGGGG
GGGGGTTGCTCCCCTCCCGCCTGGGAAGGAGGCGGCGCCGGCGGCAGCGG
TGCGAAAGGCAGTGGTCGTGTCGGAGGCGTTAGGCACGGGGGCGGCGGTG
GTTTTGGTTCGGGCGCGAACAGCGCGGCGTTTCGGGAGAACCGGTCCCGC
TTGGAGGCCGCGATGGCGTCGGCGGCTCACTCACCAGCAGCGGCGATCGA
CGGCGGCGGCGGCGGCGGCGGTTTCGACCCCACCCACGTGCGTACGTCTC
GCGGGGGGGCCTCGTGGACTGTGCCCGCGTCCAACGACAACGGCGGCGGG
GCCGGAAGCGCGGCG back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_M_contig95:188105..189919- >mRNA_E-siliculosus-1a_M_contig95.17485.1 ID=mRNA_E-siliculosus-1a_M_contig95.17485.1|Name=mRNA_E-siliculosus-1a_M_contig95.17485.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=2736bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:188105..189919- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGCCTGCCGTAAGCGACGGCCCCCTCACCGGCGCTGGCGGCGGCGGTGG
CGGCGGCGGTAAGGAGAGGGGGAGCGTCAGTCTCCGTATCCGTCGTCGGA
GACTTAGTTTCGACGGCGCTGTGGATCGCGTCCCACGGTGGTGGGAGGCC
GCCGGGGCGGAGGAGGAGCGAGGCGGCGCAATCGGAGCCGCCGTTTCCGG
TGTTACTGCTGCTGCTGCTGCTCAGCAGCGTAAGCGGGCGAACACGTGGT
GCTCGTCGTCAGGCTCGACCGGGAGCGCGACAGCAGTATCGACGTCTTTG
CTGGTGCGGGCGGAAGAGGAGGAGGAAGAAGAAGAAGAAGAAGAAATGCA
TTGCAGAGCTGACGAAAGGAATAACACGGAAGAAGCGGCAGCGACCTTTG
TGACGGCGGCGATAGAAGCAGCCGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGAAGGAGAAGAAGCAACGTC
AACGACCGCATCAGGAGGAGGAGGAGGAGGAGCAGCAGCAGCAGGAGAAG
GAACGACGTCCATCCCTATGGTCGCCAGCACTGCCAAGGAAAGCGACTCG
GGGGCAGCAGCAGCAGCAGTTGCGGTACCCACAAGGACGACGACACCCGC
GACCATCGTCTCCGGAGAGGCGGCAAGCAGCGAAGCAGCAGCAGCGGCAG
AAGAAGCCGTCGCGGCAAGCAGCGAGGCCCTCCCCCAAGGGAGCGGCGGC
GACCCGTGGGCGAGCAGCAAGAGGCAGCTGCCACTTCCTCTCCAGCCTCT
CGCCGGAAGGTGCAACTTCAGGGGCTGTGGCCGGATGCCTGCCGTAAGCG
ACGGCCCCCTCACCGGCGCTGGCGGCGGCGGTGGCGGCGGCGGTAAGGAG
AGGGGGAGCGTCAGTCTCCGTATCCGTCGTCGGAGACTTAGTTTCGACGG
CGCTGTGGATCGCGTCCCACGGTGGTGGGAGGCCGCCGGGGCGGAGGAGG
AGCGAGGCGGCGCAATCGGAGCCGCCGTTTCCGGTGTTACTGCTGCTGCT
GCTGCTCAGCAGCGTAAGCGGGCGAACACGTGGTGCTCGTCGTCAGGCTC
GACCGGGAGCGCGACAGCAGTATCGACGTCTTTGCTGGTGCGGGCGGAAG
AGGAGGAGGAAGAAGAAGAAGAAGAAGAAATGCATTGCAGAGCTGACGAA
AGGAATAACACGGAAGAAGCGGCAGCGACCTTTGTGACGGCGGCGATAGA
AGCAGCCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGAAGGAGAAGAAGCAACGTCAACGACCGCATCAGGA
GGAGGAGGAGGAGGAGCAGCAGCAGCAGGAGAAGGAACGACGTCCATCCC
TATGGTCGCCAGCACTGCCAAGGAAAGCGACTCGGGGGCAGCAGCAGCAG
CAGTTGCGGTACCCACAAGGACGACGACACCCGCGACCATCGTCTCCGGA
GAGGCGGCAAGCAGCGAAGCAGCAGCAGCGGCAGAAGAAGCCGTCGCGGC
AAGCAGCGAGGCCCTCCCCCAAGGGAGCGGCGGCGACCCGTGGGCGAGCA
GCAAGAGGCAGCTGCCACTTCCTCTCCAGCCTCTCGCCGGAAGGTGCAAC
TTCAGGGGCTGTGGCCGGATATCGGTGTTCCGGTGCGGGCGGTGCCGAGC
GGCGTTCTACTGCAACCGAGACCACCAGCGGAGCGACTGGGCGTGGCACC
GGCGGGTCTGTGACGAGGGAAAGGGCGAGCCCCCCCCCCCGCTCGCGCGG
CTGGTCCTCCCGGCGCAGAGGCAGAAGGCTGTTGGCTGGGCCGACTCCAC
CCGGGTGGTACCGGCGTCGGCGGCGGACACGGGGGGGGGGGGTTGCTCCC
CTCCCGCCTGGGAAGGAGGCGGCGCCGGCGGCAGCGGTGCGAAAGGCAGT
GGTCGTGTCGGAGGCGTTAGGCACGGGGGCGGCGGTGGTTTTGGTTCGGG
CGCGAACAGCGCGGCGTTTCGGGAGAACCGGTCCCGCTTGGAGGCCGCGA
TGGCGTCGGCGGCTCACTCACCAGCAGCGGCGATCGACGGCGGCGGCGGC
GGCGGCGGTTTCGACCCCACCCACGTGCGTACGTCTCGCGGGGGGGCCTC
GTGGACTGTGCCCGCGTCCAACGACAACGGCGGCGGGGCCGGAAGCGCGG
CGATATCGGTGTTCCGGTGCGGGCGGTGCCGAGCGGCGTTCTACTGCAAC
CGAGACCACCAGCGGAGCGACTGGGCGTGGCACCGGCGGGTCTGTGACGA
GGGAAAGGGCGAGCCCCCCCCCCCGCTCGCGCGGCTGGTCCTCCCGGCGC
AGAGGCAGAAGGCTGTTGGCTGGGCCGACTCCACCCGGGTGGTACCGGCG
TCGGCGGCGGACACGGGGGGGGGGGGTTGCTCCCCTCCCGCCTGGGAAGG
AGGCGGCGCCGGCGGCAGCGGTGCGAAAGGCAGTGGTCGTGTCGGAGGCG
TTAGGCACGGGGGCGGCGGTGGTTTTGGTTCGGGCGCGAACAGCGCGGCG
TTTCGGGAGAACCGGTCCCGCTTGGAGGCCGCGATGGCGTCGGCGGCTCA
CTCACCAGCAGCGGCGATCGACGGCGGCGGCGGCGGCGGCGGTTTCGACC
CCACCCACGTGCGTACGTCTCGCGGGGGGGCCTCGTGGACTGTGCCCGCG
TCCAACGACAACGGCGGCGGGGCCGGAAGCGCGGCG back to top
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