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Homology
BLAST of mRNA_E-siliculosus-1a_M_contig95.17480.1 vs. uniprot
Match: A0A6H5K9L3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9L3_9PHAE) HSP 1 Score: 278 bits (712), Expect = 7.020e-91 Identity = 137/143 (95.80%), Postives = 139/143 (97.20%), Query Frame = 1 Query: 130 MSDTNSLKETTRSLCRSSSGVRTSVEPPFMGRFQPTVVRQKPRPEVSFDKGGSDFRCPRTFSCLGQQALSRDVYRSAGRPVFTRQDRWYVPGDKFRAHGGTPISSLGNQPTSTRTSAGRAHFGTSTRSSAMKMYALWSVGQQR 558
MSDTNSLKETTRSLC+ SS V TSVEPPFMGRFQPTVVRQKPRPEVSFDKGGSDFRCPRTFSCLGQQALSRDVYRSAGRPVFTRQDRW+VPGDKFRAHGGTPISSLGNQPTSTRTSAGRAHFGTSTRSSA KMYALWSVGQQR
Sbjct: 1 MSDTNSLKETTRSLCQPSSRVHTSVEPPFMGRFQPTVVRQKPRPEVSFDKGGSDFRCPRTFSCLGQQALSRDVYRSAGRPVFTRQDRWHVPGDKFRAHGGTPISSLGNQPTSTRTSAGRAHFGTSTRSSAKKMYALWSVGQQR 143
BLAST of mRNA_E-siliculosus-1a_M_contig95.17480.1 vs. uniprot
Match: D7G1S5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1S5_ECTSI) HSP 1 Score: 235 bits (600), Expect = 2.270e-74 Identity = 112/114 (98.25%), Postives = 112/114 (98.25%), Query Frame = 1 Query: 217 MGRFQPTVVRQKPRPEVSFDKGGSDFRCPRTFSCLGQQALSRDVYRSAGRPVFTRQDRWYVPGDKFRAHGGTPISSLGNQPTSTRTSAGRAHFGTSTRSSAMKMYALWSVGQQR 558
MGR QPTVVRQKPRPEVSFDKGGSDFRCPRTFSCLGQQALSRDVYRSAGRPVFTRQDRWYVPGDKFR HGGTPISSLGNQPTSTRTSAGRAHFGTSTRSSAMKMYALWSVGQQR
Sbjct: 1 MGRLQPTVVRQKPRPEVSFDKGGSDFRCPRTFSCLGQQALSRDVYRSAGRPVFTRQDRWYVPGDKFRVHGGTPISSLGNQPTSTRTSAGRAHFGTSTRSSAMKMYALWSVGQQR 114
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 432 |
| Model size | 1160 |
| Exons | 4 |
| Ec32 ortholog | Ec-07_004330.1 |
| Ec32 ortholog description | hypothetical protein |
| Hectar predicted targeting category | other localisation |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622936513.316029-UTR-E-siliculosus-1a_M_contig95:165398..165997 | 1622936513.316029-UTR-E-siliculosus-1a_M_contig95:165398..165997 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig95 165399..165997 - |
| 1696251111.611273-UTR-E-siliculosus-1a_M_contig95:165398..165997 | 1696251111.611273-UTR-E-siliculosus-1a_M_contig95:165398..165997 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig95 165399..165997 - |
| 1622936513.3857744-UTR-E-siliculosus-1a_M_contig95:167889..167993 | 1622936513.3857744-UTR-E-siliculosus-1a_M_contig95:167889..167993 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig95 167890..167993 - |
| 1696251111.647399-UTR-E-siliculosus-1a_M_contig95:167889..167993 | 1696251111.647399-UTR-E-siliculosus-1a_M_contig95:167889..167993 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig95 167890..167993 - |
| 1622936513.402746-UTR-E-siliculosus-1a_M_contig95:168398..168423 | 1622936513.402746-UTR-E-siliculosus-1a_M_contig95:168398..168423 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig95 168399..168423 - |
| 1696251111.658046-UTR-E-siliculosus-1a_M_contig95:168398..168423 | 1696251111.658046-UTR-E-siliculosus-1a_M_contig95:168398..168423 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig95 168399..168423 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622936513.3342588-CDS-E-siliculosus-1a_M_contig95:165997..166140 | 1622936513.3342588-CDS-E-siliculosus-1a_M_contig95:165997..166140 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig95 165998..166140 - |
| 1696251111.6191435-CDS-E-siliculosus-1a_M_contig95:165997..166140 | 1696251111.6191435-CDS-E-siliculosus-1a_M_contig95:165997..166140 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig95 165998..166140 - |
| 1622936513.3487918-CDS-E-siliculosus-1a_M_contig95:166725..166923 | 1622936513.3487918-CDS-E-siliculosus-1a_M_contig95:166725..166923 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig95 166726..166923 - |
| 1696251111.627431-CDS-E-siliculosus-1a_M_contig95:166725..166923 | 1696251111.627431-CDS-E-siliculosus-1a_M_contig95:166725..166923 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig95 166726..166923 - |
| 1622936513.3645039-CDS-E-siliculosus-1a_M_contig95:167798..167889 | 1622936513.3645039-CDS-E-siliculosus-1a_M_contig95:167798..167889 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig95 167799..167889 - |
| 1696251111.6369505-CDS-E-siliculosus-1a_M_contig95:167798..167889 | 1696251111.6369505-CDS-E-siliculosus-1a_M_contig95:167798..167889 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig95 167799..167889 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig95.17480.1 >prot_E-siliculosus-1a_M_contig95.17480.1 ID=prot_E-siliculosus-1a_M_contig95.17480.1|Name=mRNA_E-siliculosus-1a_M_contig95.17480.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=144bp
MSDTNSLKETTRSLCRSSSGVRTSVEPPFMGRFQPTVVRQKPRPEVSFDK
GGSDFRCPRTFSCLGQQALSRDVYRSAGRPVFTRQDRWYVPGDKFRAHGG
TPISSLGNQPTSTRTSAGRAHFGTSTRSSAMKMYALWSVGQQR* back to topmRNA from alignment at E-siliculosus-1a_M_contig95:165399..168423- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_M_contig95.17480.1 ID=mRNA_E-siliculosus-1a_M_contig95.17480.1|Name=mRNA_E-siliculosus-1a_M_contig95.17480.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=3025bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:165399..168423- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GCAAGAGCGAACTCTGCGCCCAACGGTGAGACTACCACAGTATGCAGGCT
GCATTATGACTAGGTCGACATCGATTTGATATCGATCAGAGAGGGGGGCT
CTGGATGGCTGAACCCCTTTCGTGTTTTGTGTTGTTTGGTGAGCTGCAGG
GTGCGTCAGCAAGCGTCACACCCGTTTAGCGCGAACCGATAGACATCTCG
CCGCCATCCTTGCATCATCTACATCAATGTCGAGTTTGTCCGGCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTGCTTCCTCCCTCCCTCC
CTTCCTCCTCTTTTCTCTCACTTTCCCTCCTCCCGTCCTCGTTCTCTCAG
CTTCCTGTTCCCTCCTTCCTACGCTACACAAGGTATACTTATCCCCTCTT
CCCATTGACACCACATTGCCTCTGACCAAGAGAGGTCGTTCAGCAGGTAC
CCAGCAAGTGTCGCGTCGTCAGAAAAACAACAGCATAAAGCTTGCAGGAG
AACGAACGTGGCGAACGACGCCCTATGCGAATCGATGTCTGACACCAACT
CGTTGAAGGAAACCACGCGGTCCTTGTGCCGCTCATCTTCCGGGGTGCGT
ACATCTGTCGAGCCTCCGTTTATGGGTGAGTGAGTGCCACCAGCAGTCTC
TACCCCGAGAGGCATGTTATGTACGCACCAGTCCAACGAAAAACTTGGCA
GGGCACAGCGTTGTGTTGTTCGACGCAACGTGTGGTGTAAGGGCGGTCTC
ATCAACCTGTTGATTGAACGCGGGATCGTGGCCGCCAATCGACCGCCCCT
CCGCCCACTCGCCAGTCTGAGGAAACCGCGGTATCGCGAAGAGGAGACGT
TAAAGAAACGGGGAATTCAAGCCGGGAAATAACATTCCTCATGTTGTAGT
CTACAGTTGTAGTTTTGATGATTTTTCAGAAAATGTAGAATACTCGGAGT
ACATCACAACCGCTGATGTTGCGATATCGCGTTGAAAGGATTATGTGCTG
GACCGAGTGAAAACACCGCACGCACGTAGCGATGCCCCCCTTCAAGGTTG
ATGGTTTAGCTTTCGAGATCGTCCGCAAGCCAACTCTTCATGACTGTTTT
GAACCATCGAGAAAATCGATTCATGCAATGATGTAACGACCTTCGACCCC
GACAGTGGGACGAATAAAGCCAACTCGTGGACTTCGAAGTTTGCCCTGAG
TGCGCAGTACCACACGCGTCACCGATTACCAAGAGTTGGACGGGGACACC
CGTAACCCCAATACACAAAACGTGGCCGACAATACATAGCCGTGTAGCAG
TTTTTTAGAACGGTAGGTGCGTGTGGGAACGGACATCCAAAGAGAGCGTC
AGCGACACGCCAAACCTCCCACGATCACGCACTCTTAAACGCATGTGCCC
TCTGCGGTCGATACACACACGCATTCATTCCTGTTTTCTCCCTGGAAAAC
TAATTCCACTCACTAAAGCCGAAAGTCCCGCTCGCGTATGCATACTACAG
GTCGCTTCCAGCCCACGGTCGTGCGTCAAAAGCCTCGTCCAGAGGTGTCC
TTCGACAAGGGAGGCAGCGACTTCCGCTGCCCAAGGACCTTCAGCTGCCT
GGGTCAGCAGGCCCTGTCGAGAGACGTCTATCGCTCGGCGGGGAGGCCGG
TGTTCACGAGGCAGGACAGGTGGTACGTGCCTGGCGACAAGTTCAGAGGT
GAGAGTAGGCTAGTGCCCTAATCCTAACCTCACACTAAAGTCTTTTTATT
TTTGGCCGTACTTCTTTAGGCTGAACGAGAACATGTTCGGGGAAAACACG
GGAGGCAGCTTCGGGTATCCTAGACAGCCTAGATAACGAGCTTCGCTTCA
CTTTGTCTGCTCCCTCTCAGGTAAAGCTAAGACTACATTTTTCTCACTCC
TTGTTGCTTGCTAGGTAGCCTGCAGCCAAAATCTGGGTTTAGGGCTGGGT
TACTAGCCAGGCAATCATGTTTCCACTCGGGATCTCATGCGTTGAATGAC
TCAGGTTCGTTTATCCTCAACTGCTGAAAAAATGGCGTCTCATTGAGTAC
AAGCGCTTTCGCAGACACAATCCGTTTCCCTTCCTTGCCATAACAATAGC
AATAATTTCCGCTGCGCAAATCTTACAACGATTTCCCCCACCAACGTTTA
CCCCACCAACGTTTTTCATTCTACCCCATCTATTTGCCCGCTCATCATCA
TCCGCCGCCCATGTGCTTCTTCCTACTCCACCCGCCCGTGCGTCTCCCAC
GAACTGCTGTCATTTTTCTCTTGTGTCCATCAGCGCACGGGGGAACGCCG
ATCTCGTCTCTGGGCAACCAGCCCACGTCCACCAGGACCTCGGCCGGTCG
GGCGCACTTCGGGACTTCCACCCGCAGCAGCGCCATGAAGATGTACGCGC
TCTGGTCTGTCGGGCAGCAACGATGACGGCGGCGTGTGTGTGTGCGTGGT
GTCATTTGTAATCGGTCGCATGACTGGAAGGGCAACTGTAGATAGGTATT
GGTGCACATCATGGCAGCTTGACAACCTTTAACAATGCCGGATTATGCCA
CTGCCGGCAGCAGGGAATAGTGGAGCAAGTACGAAGTCATGCATGTTGCA
AAATCGGATACATACGTGAGAGCCGGCTGCGTCGATGGTTGGTCGTTTGA
GACTTGTACTCGTGTGCTCGTGTACCACTTGAAAAGCACCAAAGGGCTTC
ATATCGCAGGGAGAGATCGCAACACTAGAGTGTCTTACCATGTAGGCGGT
GGATGCCAGGATATATTCATTTCTGTGATTTGGCCGGCCAACCAGCGGCT
ATGTCAATGGCGATGGGACGGCTACTGTGAAAAGTAGGAAAACACAAAGG
CTTAGTCTACTGAGCTTTTTTTTCTTGGGCGTTCTCGGCGTTTTGGTGTT
GCGTGAAGCGTCATCAAGGGCTAAATCTGCGGCCATTACCGGACGACAGT
GGCACGATGAATGCGGCGTCGCTGTTCTTGTATCCTCGAGCTAGTAATCC
CTGAGCCTGACGTCGTGAGAGAACC back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_M_contig95:165399..168423- >mRNA_E-siliculosus-1a_M_contig95.17480.1 ID=mRNA_E-siliculosus-1a_M_contig95.17480.1|Name=mRNA_E-siliculosus-1a_M_contig95.17480.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=864bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:165399..168423- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGTCTGACACCAACTCGTTGAAGGAAACCACGCGGTCCTTGTGCCGCTC
ATCTTCCGGGGTGCGTACATCTGTCGAGCCTCCGTTTATGGATGTCTGAC
ACCAACTCGTTGAAGGAAACCACGCGGTCCTTGTGCCGCTCATCTTCCGG
GGTGCGTACATCTGTCGAGCCTCCGTTTATGGGTCGCTTCCAGCCCACGG
TCGTGCGTCAAAAGCCTCGTCCAGAGGTGTCCTTCGACAAGGGAGGCAGC
GACTTCCGCTGCCCAAGGACCTTCAGCTGCCTGGGTCAGCAGGCCCTGTC
GAGAGACGTCTATCGCTCGGCGGGGAGGCCGGTGTTCACGAGGCAGGACA
GGTGGTACGTGCCTGGCGACAAGTTCAGAGGTCGCTTCCAGCCCACGGTC
GTGCGTCAAAAGCCTCGTCCAGAGGTGTCCTTCGACAAGGGAGGCAGCGA
CTTCCGCTGCCCAAGGACCTTCAGCTGCCTGGGTCAGCAGGCCCTGTCGA
GAGACGTCTATCGCTCGGCGGGGAGGCCGGTGTTCACGAGGCAGGACAGG
TGGTACGTGCCTGGCGACAAGTTCAGAGCGCACGGGGGAACGCCGATCTC
GTCTCTGGGCAACCAGCCCACGTCCACCAGGACCTCGGCCGGTCGGGCGC
ACTTCGGGACTTCCACCCGCAGCAGCGCCATGAAGATGTACGCGCTCTGG
TCTGTCGGGCAGCAACGATGACGCACGGGGGAACGCCGATCTCGTCTCTG
GGCAACCAGCCCACGTCCACCAGGACCTCGGCCGGTCGGGCGCACTTCGG
GACTTCCACCCGCAGCAGCGCCATGAAGATGTACGCGCTCTGGTCTGTCG
GGCAGCAACGATGA back to top
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