mRNA_E-siliculosus-1a_M_contig95.17477.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig95.17477.1 vs. uniprot
Match: D7G143_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G143_ECTSI) HSP 1 Score: 549 bits (1414), Expect = 7.840e-179 Identity = 312/459 (67.97%), Postives = 318/459 (69.28%), Query Frame = 1 Query: 1318 WGLSLLQQWATDDTVFSALERSSPSKEDEQRPSNEHLNDRSGARRREQAIATVVPCKGSSTTARASSAGTGGLGHGGGDLRLAATPRERELSLALEAAASVDEEVAVDLFTPG-------------------------------------------------------------------------------------SRAQWTAVYRGPSRGKLCVDGLEPCRRYRFRSHLSTSMGAGRRGGSWRHASFCTLPERPPAPVAAGWLPGGPALSAETPRLGDDRGTSGGNSCPRQLSVLRGGDARRKNGFKNLRLKMGVERISTCGRTEGIPLTSETATRNKTEGRRHKSAEDCGMWVVECRTRLRFTGGYAWCTDDRTALEWAAGVGATKGLAESGVNSAGAAADDRNNSSTTINLCRSSQGDANDDGGGQELRSEESTDAG--WELVYRGRRSECVVG 2433
WGLSLL+QWA DDTVF A ER SPS+ED QRPSN HLNDRSGARRREQA+ TVVPCKGSSTTARASSAGTGGLGHGGGDLRLAATPRERELSL LEA SV EEVAVDLFTPG SRAQWTA+YRGPSRGKL VDGLEP RRYRFRS LSTSMGAGRRGGSWRHASFCTLPERPPAPVAAGWLPGGPALSAETPRLGDDR TSGGNS R+LSVL GGDAR KNGF+NLRLKMGVER STCGR EGIPLTSETATRNKTEG HKSAEDCGMWVVECRTRLRFTGGYAWCTDDRTALEWA GVGATKG AESGVNSAGAA QELRSEES DAG WELVYRGRRS CVVG
Sbjct: 26 WGLSLLRQWAADDTVFDAFERPSPSEEDAQRPSNGHLNDRSGARRREQAMETVVPCKGSSTTARASSAGTGGLGHGGGDLRLAATPRERELSLVLEAMPSVGEEVAVDLFTPGGVGACMRNGQMQAQARTALCSRCAPSGGGGRTALCSVVKNYPNRSCWFFSFAVFRECSSAVTKATLSPPPSPCQLQLNVDFRWTGSRAQWTALYRGPSRGKLRVDGLEPGRRYRFRSRLSTSMGAGRRGGSWRHASFCTLPERPPAPVAAGWLPGGPALSAETPRLGDDRDTSGGNSRLRRLSVLSGGDARGKNGFENLRLKMGVERSSTCGRPEGIPLTSETATRNKTEGPWHKSAEDCGMWVVECRTRLRFTGGYAWCTDDRTALEWAGGVGATKGPAESGVNSAGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXQELRSEESMDAGAPWELVYRGRRSMCVVG 484
BLAST of mRNA_E-siliculosus-1a_M_contig95.17477.1 vs. uniprot
Match: A0A6H5KI78_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI78_9PHAE) HSP 1 Score: 413 bits (1061), Expect = 2.900e-131 Identity = 237/365 (64.93%), Postives = 248/365 (67.95%), Query Frame = 1 Query: 1315 QWGLSLLQQWATDDTVFSALERSSPSKEDEQRPSNEHLNDRSGARRREQAIATVVPCKGSSTTARASSAGTGGLGHGGGDLRLAATPRERELSLALEAAASVDEEVAVDLFTPG-----------------------------------------------------------------SRAQWTAVYRGPSRGKLCVDGLEPCRRYRFRSHLSTSMGAGRRGGSWRHASFCTLPERPPAPVAAGWLPGGPALSAETPRLGDDRGTSGGNSCPRQLSVLRGGDARRKNGFKNLRLKMGVERISTCGRTEGIPLTSETATRNKTEGRR------HKSAEDCGMWVVECRTRLR-----FTGGYAWC 2181
+WGLSLL+QWA DDTVF+A ER SPS+ED QRPSN HLNDRSG RRREQA ATVVPCKGSSTTARASSA TGGLGHGGGDLRL ATPRERELSLALEA SV EEVAVDLFTPG SRAQWTA+YRG SRGKL VDGLEPCRRYRFRS LST MGAGRRGGSWRHASFCTLPERPPAPVAAGWLPGGPALSAETP LGDD TSGGNSC R+LS+L GGDAR KNGFKNLRLKMG ERISTCGR EGIPL SETATR KTEGR +A + C RL+ FTG +A C
Sbjct: 7 EWGLSLLRQWAADDTVFNAFERPSPSEEDAQRPSNGHLNDRSGVRRREQARATVVPCKGSSTTARASSACTGGLGHGGGDLRLTATPRERELSLALEATPSVGEEVAVDLFTPGGEIACVQKGRMQSRARTAFCSRCAPFGGGRRTASCRVVKNYLSRSCSLLSFALFRECSSAVTKQRSRAQWTALYRGRSRGKLHVDGLEPCRRYRFRSRLSTPMGAGRRGGSWRHASFCTLPERPPAPVAAGWLPGGPALSAETPCLGDDLDTSGGNSCLRRLSILSGGDARGKNGFKNLRLKMGEERISTCGRPEGIPLASETATRKKTEGRWPLVSYCESNAPPPVNMFMGCILRLKLLAEDFTGDFARC 371
BLAST of mRNA_E-siliculosus-1a_M_contig95.17477.1 vs. uniprot
Match: A0A6H5KWT3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWT3_9PHAE) HSP 1 Score: 333 bits (853), Expect = 1.050e-101 Identity = 178/216 (82.41%), Postives = 179/216 (82.87%), Query Frame = 2 Query: 2660 GSSYAFRCARENADGQVGPWSTDLRCTVPGSTENLDRRSSGGNRKRNASDNRKASRADPNVAGDATRLLNGIGSSDAIAGNQARLMSESKATEFQPRFNLLVPALVDAFARLAEDGDRWIGSTRSTPLWPPPRRAVASCRPAPTSAATPAATADPTSTQTAHDREHHHGASSKGSGSAPQGETAKMVWDEHWDPERRIPFFSLRGRDLSVWQIPAL 3307
GSSYAFRCARENADGQVGPWSTDLRCTVPGSTEN DRRSSGGNRK N SDNR SRADP+VAGDATRLLNGIGSSDAIAGNQ R M ESKATEFQPRFNLLVPALVD FARLAEDG RWIGST STPL PP RAVAS R A TS AHDREH H ASSKGSGSA QGETAKMVWDEHWD ERRIPFF LRGRDLSVWQIPAL
Sbjct: 110 GSSYAFRCARENADGQVGPWSTDLRCTVPGSTENFDRRSSGGNRKSNTSDNRMTSRADPHVAGDATRLLNGIGSSDAIAGNQPRPMPESKATEFQPRFNLLVPALVDVFARLAEDGSRWIGSTHSTPLRQPPPRAVASSRTAATSXXXXXXXXXXXXXXXAHDREHQHWASSKGSGSAQQGETAKMVWDEHWDSERRIPFFCLRGRDLSVWQIPAL 325 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig95.17477.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig95.17477.1 >prot_E-siliculosus-1a_M_contig95.17477.1 ID=prot_E-siliculosus-1a_M_contig95.17477.1|Name=mRNA_E-siliculosus-1a_M_contig95.17477.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=594bp MSTVTAGAKKKREQPGQGWKAKTDEASKPFPERFPAGNHEGSREREGARSback to top mRNA from alignment at E-siliculosus-1a_M_contig95:99607..107349- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig95.17477.1 ID=mRNA_E-siliculosus-1a_M_contig95.17477.1|Name=mRNA_E-siliculosus-1a_M_contig95.17477.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=7743bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:99607..107349- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig95:99607..107349- >mRNA_E-siliculosus-1a_M_contig95.17477.1 ID=mRNA_E-siliculosus-1a_M_contig95.17477.1|Name=mRNA_E-siliculosus-1a_M_contig95.17477.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=3564bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:99607..107349- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |