mRNA_E-siliculosus-1a_M_contig95.17476.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig95.17476.1 vs. uniprot
Match: D7G142_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G142_ECTSI) HSP 1 Score: 549 bits (1414), Expect = 5.850e-194 Identity = 273/274 (99.64%), Postives = 274/274 (100.00%), Query Frame = 1 Query: 622 MARLRTGGIAVQAVTTFSSLQGRASGGGDSFGGPGGVGGGGTGPALGSAQEEALVAERKEARNRHPGPTLEGIGERGPASSAMLALKTHKGGPSLVSPHICIGAREDAKNLEALKELGVTHILNCAKQLPSSHPREFVHARLELADTSEQELAPFQKAGISFLRQVEDCGGRALVHCIAGCSRSVSIVLLHLMEGHRIRLKLAYEHVRSYRMVAQPNEGFRFQLATTEVKIFGSSSVSRDADSTWNFYRWNEVKQGVPYHATEPPQSCCGCTMA 1443
MARLRTGGIAVQAVTTFSSLQGRASGGGDSFGGPGGVGGGGTGPALGSAQEEALVAERKEARNRHPGPTLEGIGERGPASSAMLALKTHKGGPSLVSPHICIGAREDAKNLEALKELGVTHILNCAKQLPSSHPREFVHARLELADTSEQELAPFQKAGISFLRQVEDCGGRALVHCIAGCSRSVS+VLLHLMEGHRIRLKLAYEHVRSYRMVAQPNEGFRFQLATTEVKIFGSSSVSRDADSTWNFYRWNEVKQGVPYHATEPPQSCCGCTMA
Sbjct: 1 MARLRTGGIAVQAVTTFSSLQGRASGGGDSFGGPGGVGGGGTGPALGSAQEEALVAERKEARNRHPGPTLEGIGERGPASSAMLALKTHKGGPSLVSPHICIGAREDAKNLEALKELGVTHILNCAKQLPSSHPREFVHARLELADTSEQELAPFQKAGISFLRQVEDCGGRALVHCIAGCSRSVSMVLLHLMEGHRIRLKLAYEHVRSYRMVAQPNEGFRFQLATTEVKIFGSSSVSRDADSTWNFYRWNEVKQGVPYHATEPPQSCCGCTMA 274
BLAST of mRNA_E-siliculosus-1a_M_contig95.17476.1 vs. uniprot
Match: A0A7S3YH23_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YH23_HETAK) HSP 1 Score: 194 bits (492), Expect = 2.310e-54 Identity = 96/209 (45.93%), Postives = 141/209 (67.46%), Query Frame = 1 Query: 772 EEALVAERKEARNRHPGPTLEGIGERGPASSAMLALKTHKGGPSLVSPHICIGAREDAKNLEALKELGVTHILNCA-KQLPSSHPREFVHARLELADTSEQELAPFQKAGISFLRQVEDCGGRALVHCIAGCSRSVSIVLLHLMEGHRIRLKLAYEHVRSYRMVAQPNEGFRFQLATTEVKIFGSSSVSRDADSTWNFYRWNEVKQGVP 1395
E+ALV + + A RHPGP L G G +SA L G SLVS HI +G RED+ ++E L+++G+THILN A +Q+ +SHP++F++ L+LAD +Q+L ++ + F++ VE GGR LVHCIAG SRSVS+V++HLM H++ L++A++H++S R PN GF QLA EV+ FG+++V+ + WNFY WN +KQ P
Sbjct: 98 EKALVKQAQRAMARHPGPALGGGG-----ASAYRQLTAPLHGLSLVSQHIALGNREDSADIEGLQKMGITHILNAAAEQVRNSHPKDFIYMSLKLADNPQQDLTKYRDKAVGFIQHVERLGGRVLVHCIAGVSRSVSLVIMHLMNSHQMYLRVAFDHIKSIRPYISPNNGFLLQLAKYEVERFGATTVASAPE--WNFYEWNALKQRTP 299
BLAST of mRNA_E-siliculosus-1a_M_contig95.17476.1 vs. uniprot
Match: A0A835ZC85_9STRA (Protein-tyrosine phosphatase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC85_9STRA) HSP 1 Score: 176 bits (445), Expect = 2.050e-48 Identity = 94/233 (40.34%), Postives = 135/233 (57.94%), Query Frame = 1 Query: 811 RHPGPTLEGIGERGPASSAMLALKTHKGGPSLVSPHICIGAREDAKNLEALKELGVTHILNCAKQLPSSHPREFVHARLELADTSEQELAPFQKAGISFLRQVEDCGGRALVHCIAGCSRSVSIVLLHLMEG---------HRIRLKLAYEHVRSYRMVAQPNEGFRFQLATTEVK------------------IFGSSSVSRDADSTWNFYRWNEVKQGVPYHATEPPQSCC 1428
RHPGP L G A S+ + + P LVSP ICIG++EDA + E L+ELGVTH+LN A++ P +HP +F +++L D ++Q L PF+ +F+R VE GGR LVHC+AGCSRSVS+V+ HLM H + L+ A H+R +R +A PN+ F ++LA E + IF +SSV+R + +NFY+WN++K+ +H E S C
Sbjct: 3 RHPGPPLPAACIVG-ARSSFIDMGQDARPPQLVSPCICIGSKEDAADAEWLRELGVTHVLNVAREAPLAHPAQFFCLKVDLLDNADQTLRPFRDQTAAFMRNVEGIGGRVLVHCVAGCSRSVSVVITHLMAAVPAVRCALLHGLCLRTALAHIRRHRSLAYPNQAFLYELAVMETERSKTDGQLRWQIMSRLRQIFKASSVNRGVIAEFNFYKWNKIKRQYRHHCPEYDSSGC 234
BLAST of mRNA_E-siliculosus-1a_M_contig95.17476.1 vs. uniprot
Match: A0A7S2AYV9_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2AYV9_9STRA) HSP 1 Score: 171 bits (433), Expect = 3.990e-46 Identity = 77/177 (43.50%), Postives = 115/177 (64.97%), Query Frame = 1 Query: 901 SLVSPHICIGAREDAKNLEALKELGVTHILNCAKQLPSSHPREFVHARLELADTSEQELAPFQKAGISFLRQVEDCGGRALVHCIAGCSRSVSIVLLHLMEGHRIRLKLAYEHVRSYRMVAQPNEGFRFQLATTEVKIFGSSSVSRDADSTWNFYRWNEVKQGVPYHATE-PPQSCC 1428
S ++ HI +G RE A++ L+ELGVTH+LN QLP+ HP +FV+ ++++ D E + +QK F++ +E+ GGR LVHC+AGCSRSV +VL+HLM H + L+ +EH++S R PNEGF+ LA EV+IFG+++++ D W+FY WN +K P + QS C
Sbjct: 102 SHITRHILVGNRESARDATGLQELGVTHVLNGTSQLPNFHPHKFVYLKIDMLDAPETPIVSYQKKASKFIQHIEEKGGRVLVHCVAGCSRSVCLVLMHLMVHHGVYLRDGWEHMKSVRPQMNPNEGFKLALAKLEVQIFGATTMANCQDKLWDFYGWNAIKSSYPKRQSRREQQSAC 278
BLAST of mRNA_E-siliculosus-1a_M_contig95.17476.1 vs. uniprot
Match: A0A7S3HR27_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HR27_9STRA) HSP 1 Score: 168 bits (425), Expect = 7.080e-44 Identity = 87/215 (40.47%), Postives = 130/215 (60.47%), Query Frame = 1 Query: 772 EEALVAERKEARNRHPGPTLEGIGERGPASSAMLALKTHKGGP-------SLVSPHICIGAREDAKNLEALKELGVTHILNCAKQLPSSHPREFVHARLELADTSEQELAPFQKAGISFLRQVEDCGGRALVHCIAGCSRSVSIVLLHLMEGHRIRLKLAYEHVRSYRMVAQPNEGFRFQLATTEVKIFGSSSVSRDADSTWNFYRWNEVKQGVP 1395
E +++ ERK R RH G ++ I + S LA T+ SL++ +I +G REDA+N L E GVTH+LN A+QLP+ P+ FV+ ++ L D + + ++ +SFL VE GR L+HC+AG SRSVS++L+HLM HR+ L+ ++ +VRS R PN+ F+ QLA EV+ SSV++D D W+FY WN +K+ +P
Sbjct: 112 EASIIEERKGNRARHVGRSISSIRKNSSVHSFSLAGFTNMTSSISQFRAMSLITDNILLGGREDAENAAQLIEYGVTHVLNTAQQLPNYFPQHFVYLKVGLLDATNANVVEVMESVVSFLSHVERVQGRVLLHCLAGVSRSVSVLLMHLMVRHRLCLQHSFRYVRSCRPQINPNDAFKLQLARLEVQELRYSSVAKDGDKMWDFYEWNAIKRTMP 326
BLAST of mRNA_E-siliculosus-1a_M_contig95.17476.1 vs. uniprot
Match: A0A8J2SU05_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SU05_9STRA) HSP 1 Score: 160 bits (405), Expect = 1.020e-41 Identity = 74/166 (44.58%), Postives = 106/166 (63.86%), Query Frame = 1 Query: 901 SLVSPHICIGAREDAKNLEALKELGVTHILNCAKQLPSSHPREFVHARLELADTSEQELAPFQKAGISFLRQVEDCGGRALVHCIAGCSRSVSIVLLHLMEGHRIRLKLAYEHVRSYRMVAQPNEGFRFQLATTEVKIFGSSSVS-RDADSTWNFYRWNEVKQGVP 1395
++V+ H+ +G REDA + L+ +G+TH+LN KQLP+ HP F++ ++ L D + + + +FL++VE GGR LVHCIAG SRSV++ ++HLM H + L +A+ H+ R A PNEGF+ QLA EV + G SSV+ RDA W FY WN K VP
Sbjct: 126 TIVTHHLVLGCREDAMDRRRLEGIGITHVLNTCKQLPNYHPDAFIYHKIPLMDAPDAPIMSCFEVAANFLQRVERVGGRCLVHCIAGSSRSVALAIVHLMVSHHVPLHVAFHHINRMRPQANPNEGFKLQLALLEVSVLGGSSVAGRDAGDAWFFYEWNTRKNAVP 291
BLAST of mRNA_E-siliculosus-1a_M_contig95.17476.1 vs. uniprot
Match: A0A7S1CB64_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CB64_9STRA) HSP 1 Score: 135 bits (341), Expect = 6.100e-32 Identity = 69/163 (42.33%), Postives = 94/163 (57.67%), Query Frame = 1 Query: 907 VSPHICIGAREDAKNLEALKELGVTHILNCAKQLPSSHPREFVHARLELADTSEQELAPFQKAGISFLRQVEDCGGRALVHCIAGCSRSVSIVLLHLMEGHRIRLKLAYEHVRSYRMVAQPNEGFRFQLATTEVKIFGSSSVSRDADSTWNFYRWNEVKQGVP 1395
V I IG R DAK+ L E GVTH+LN KQLP+ H R+F++ +L + D+ ++L P +A FL +VHCIAG SRSV+IV+ +L+ L A V+ +R +A PNE F FQL E++ G SSV+ D W F+RWN VK+ P
Sbjct: 200 VDGFIIIGDRADAKSRTGLIEKGVTHVLNATKQLPNYHERDFMYCKLPIEDSPTEDLTPHYEAAFDFLDSARAVDSFCMVHCIAGVSRSVAIVMAYLLVRRDHTLLSAGRLVKKHRPLASPNEAFLFQLTQLEIETLGGSSVATTRDRMWQFHRWNVVKRKAP 362
BLAST of mRNA_E-siliculosus-1a_M_contig95.17476.1 vs. uniprot
Match: F0YLX9_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YLX9_AURAN) HSP 1 Score: 128 bits (321), Expect = 6.640e-32 Identity = 60/123 (48.78%), Postives = 80/123 (65.04%), Query Frame = 1 Query: 961 LKELGVTHILNCAKQLPSSHPREFVHARLELADTSEQELAPFQKAGISFLRQVEDCGGRALVHCIAGCSRSVSIVLLHLMEGHRIRLKLAYEHVRSYRMVAQPNEGFRFQLATTEVKIFGSSS 1329
L+ELGVTH+LN QLP+ HP FV+ ++ + D + + + FL++VE GGR LVHCIAG SRSV++ L+HLM HR+ L + + HV R A PNEGF+ QLA EVK+ G SS
Sbjct: 2 LQELGVTHVLNACSQLPNYHPDHFVYHKIAILDAPKAPIVTCAEVAAQFLQRVERVGGRCLVHCIAGSSRSVTLTLMHLMISHRVPLHVGFHHVNRMRPQANPNEGFKLQLALLEVKVLGGSS 124
BLAST of mRNA_E-siliculosus-1a_M_contig95.17476.1 vs. uniprot
Match: A0A485L5F9_9STRA (Aste57867_16439 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L5F9_9STRA) HSP 1 Score: 126 bits (317), Expect = 2.760e-29 Identity = 65/160 (40.62%), Postives = 89/160 (55.62%), Query Frame = 1 Query: 907 VSPHICIGAREDAKNLEALKELGVTHILNCAKQLPSSHPREFVHARLELADTSEQELAPFQKAGISFLRQVEDCGGRALVHCIAGCSRSVSIVLLHLMEGHRIRLKLAYEHVRSYRMVAQPNEGFRFQLATTEVKIFGSSSVSRDADSTWNFYRWNEVKQ 1386
+ P + +G A+N E L GVTHI N A Q P +FV+ L L D + Q+LA +F+ + +D GGR LVHC+AG SRS V++ LM + L AY HV++ R + PN FRFQLA E+ +F +SSV D W+FY N +Q
Sbjct: 119 ILPFLLLGGDAAARNHELLYRAGVTHICNVAAQCDVHFPGKFVYIHLHLQDMASQKLARHFDHVTAFILRAKDLGGRVLVHCVAGVSRSACFVIVFLMRHCNMNLAQAYAHVKAKREIVHPNSSFRFQLAMYEIDLFEASSVLHSTDPDWDFYELNVYRQ 278
BLAST of mRNA_E-siliculosus-1a_M_contig95.17476.1 vs. uniprot
Match: W4HAJ4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4HAJ4_9STRA) HSP 1 Score: 120 bits (300), Expect = 4.790e-27 Identity = 64/173 (36.99%), Postives = 96/173 (55.49%), Query Frame = 1 Query: 868 MLALKTHKGGPSLVSPHICIGAREDAKNLEALKELGVTHILNCAKQLPSSHPREFVHARLELADTSEQELAPFQKAGISFLRQVEDCGGRALVHCIAGCSRSVSIVLLHLMEGHRIRLKLAYEHVRSYRMVAQPNEGFRFQLATTEVKIFGSSSVSRDADSTWNFYRWNEVKQ 1386
+L L + P + +G A +L L++ G+TH+ N A Q P F + L L D+ Q+LA KA +F+ + + GR LVHC+AG SRSV +V+ +L+E + L AY++V+ R V P+E FR QLA E+ +F SSSV ++S W+FY N +Q
Sbjct: 111 LLGLNATPHSMDKILPFLFLGNDHAASHLPDLRKAGITHVCNVATQCNDHFPDHFEYLHLHLFDSPTQKLAKHIKAAGAFIHRAKHTNGRVLVHCVAGVSRSVCVVVAYLVEHCHMPLVQAYDYVKRKRPVMCPSESFRMQLAMYEIALFESSSVLSTSNSDWDFYELNMYRQ 283 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig95.17476.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig95.17476.1 >prot_E-siliculosus-1a_M_contig95.17476.1 ID=prot_E-siliculosus-1a_M_contig95.17476.1|Name=mRNA_E-siliculosus-1a_M_contig95.17476.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=482bp MVIGSSHRHGGASQIVPLNREPTNRASTGDDRSWRHKSTRNSPRGRWPESback to top mRNA from alignment at E-siliculosus-1a_M_contig95:91878..98549+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig95.17476.1 ID=mRNA_E-siliculosus-1a_M_contig95.17476.1|Name=mRNA_E-siliculosus-1a_M_contig95.17476.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=6672bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:91878..98549+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig95:91878..98549+ >mRNA_E-siliculosus-1a_M_contig95.17476.1 ID=mRNA_E-siliculosus-1a_M_contig95.17476.1|Name=mRNA_E-siliculosus-1a_M_contig95.17476.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=2892bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:91878..98549+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |