Homology
BLAST of mRNA_E-siliculosus-1a_M_contig95.17472.1 vs. uniprot
Match: D7G138_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G138_ECTSI) HSP 1 Score: 129 bits (323), Expect = 9.670e-32 Identity = 63/70 (90.00%), Postives = 65/70 (92.86%), Query Frame = 2 Query: 2 TCVEAVHAVSWLWAKDAPSTARPVKGTSTTRTTCGHWSLMVSLMKPGGGARRSKLAAIFRYSAKPSSIEF 211
TCVEAVHAV WLWA DAPSTAR VKGTSTTRTTCGHWSLMVSLMK G G+RRSKLAAIFRYSAKPSSI+F
Sbjct: 217 TCVEAVHAVFWLWANDAPSTARHVKGTSTTRTTCGHWSLMVSLMKRGDGSRRSKLAAIFRYSAKPSSIKF 286
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 0 |
| Stop | 1 |
| Cds size | 456 |
| Model size | 888 |
| Exons | 2 |
| Hectar predicted targeting category | other localisation |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622936508.361413-CDS-E-siliculosus-1a_M_contig95:57966..58146 | 1622936508.361413-CDS-E-siliculosus-1a_M_contig95:57966..58146 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig95 57967..58146 + |
| 1696251109.8329074-CDS-E-siliculosus-1a_M_contig95:57966..58146 | 1696251109.8329074-CDS-E-siliculosus-1a_M_contig95:57966..58146 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig95 57967..58146 + |
| 1622936508.3888571-CDS-E-siliculosus-1a_M_contig95:58834..59110 | 1622936508.3888571-CDS-E-siliculosus-1a_M_contig95:58834..59110 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig95 58835..59110 + |
| 1696251109.841497-CDS-E-siliculosus-1a_M_contig95:58834..59110 | 1696251109.841497-CDS-E-siliculosus-1a_M_contig95:58834..59110 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig95 58835..59110 + |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622936508.401755-UTR-E-siliculosus-1a_M_contig95:59110..59542 | 1622936508.401755-UTR-E-siliculosus-1a_M_contig95:59110..59542 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig95 59111..59542 + |
| 1696251109.849468-UTR-E-siliculosus-1a_M_contig95:59110..59542 | 1696251109.849468-UTR-E-siliculosus-1a_M_contig95:59110..59542 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig95 59111..59542 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig95.17472.1 >prot_E-siliculosus-1a_M_contig95.17472.1 ID=prot_E-siliculosus-1a_M_contig95.17472.1|Name=mRNA_E-siliculosus-1a_M_contig95.17472.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=152bp
HVCGGSPCRVLVVGQRCSIHRPPCQGHQHDPDYLWTLVFDGVAHEAGGRS
PPFEIGGHFQVFREAFIDRIHRDQRSWCWGRRGGFRATSVVIDGADPWRR
TQASFDRVFGGGNISNSNGNTSEVEMTMLGYAWYALRFSGTCHVHVVCFI
L* back to topmRNA from alignment at E-siliculosus-1a_M_contig95:57967..59542+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_M_contig95.17472.1 ID=mRNA_E-siliculosus-1a_M_contig95.17472.1|Name=mRNA_E-siliculosus-1a_M_contig95.17472.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=1576bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:57967..59542+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CACGTGTGTGGAGGCAGTCCATGCCGTGTCTTGGTTGTGGGCCAAAGATG
CTCCATCCACCGCCCGCCCTGTCAAGGGCACCAGCACGACCCGGACTACC
TGTGGACATTGGTCTTTGATGGTGTCGCTCATGAAGCCGGGGGGCGGAGC
CCGCCGTTCGAAATTGGCGGCCATTTTCAGGTGTAGTGGGGCGCATGCGG
TGAAAGTTGGGGGAATCATGAAGGTCGGTCTCATCTCGACCGCCGTTCCA
GATTATTAGCCTCTACTGTTGGATGCGGCCACTGCTGTTGCGGCTGTTGC
TTGTAGTAGGGAGCGCTGCGCTGCCTCGTCGCTAAGCGTGAATTCACGTA
GTCCCGCTGGCCTGGTACCCTTCGGTCGGACATGCGTACCACTCCTCCGC
TCCTGTAAGATGGTAGGCGGGAGGGTCCCGTAGACACAGAAACTTCATTT
GCCAGAAGGGCGCGCGCTCTCATGTCAACAGTACACAATGCCGCCTGGCC
GGCGCCTTCCCAAACGCTTTGCCGTCTACTCGCCGGGCTACCCTTACGTT
GCACGTGCCATATATCAAGGCGACTCCTCCTGTGCGTTAGCTTGGTGATG
AGTTGATAGCAGGCCTATCGTATCGGTGCTTGCAGGAGTGGTGTCGATTC
GCACGCGCCATCCGGTTCTTTGAAAATCGAATCCGGTTGATTTTTTCCAG
TTCAAAACGCGCGCCACACCGCTTGAAGAGGAAGAAAATGTTTCATTGTC
CGGCTTTTCGGCCTGTTCGGAATCGGAACTCGTTCCCCACCACGTTGCCG
AGACGGTCTGTTAGCTCGCGCAGTCTACGTCAACTTTGCAGTCCGATCAA
TTTCGCGCACTTCTGCAGGTATTCCGCGAAGCCTTCATCGATCGAATTCA
TCGTGATCAACGGTCCTGGTGTTGGGGGCGGAGAGGGGGTTTTCGGGCCA
CTTCCGTTGTCATTGACGGAGCGGATCCATGGCGGCGCACGCAGGCCAGC
TTCGATAGAGTGTTCGGCGGTGGCAACATCAGCAACAGCAACGGCAACAC
ATCAGAGGTCGAAATGACTATGCTAGGTTACGCCTGGTACGCGTTGAGGT
TTTCGGGAACGTGCCATGTTCACGTTGTTTGTTTTATCCTATAGTTCAGG
GTGCAGACTAATGTTTCTGCGTGCTTTGAAGCATCTACCAGGTAGCTTTG
AGCGATATACGCTCCGCGCAAGCCCACCCGCTTATTGTCACTCGCAATTA
ATGGGTACGTGCGCTGCCTTTTCATGATAGGCTATCCGAAGCAGCTTGAG
GGGGATGCTTGTGTGAAAGAAACGCGCCGTTGTCTGGGCTGTATGCTGCT
GATAATGTTTGCTTCACGTTTTGAAGAACAGATATCGTAAACTGTTGCTG
CGAAGTCGGTTGGTTAAGAACATGCTTTGCGTGAAGAGAAAGCAAGCTCG
ATGGTACGTTGGTTTGCATATGCATACGCGATGACGCGATATAGGTTGGG
GGGTGGTACCGTGCAAAAGTCTTTGATGATTTCTTTAGTAAACATGCTTC
GCCTAACAACGGCGGCTTCATGCGCT back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_M_contig95:57967..59542+ >mRNA_E-siliculosus-1a_M_contig95.17472.1 ID=mRNA_E-siliculosus-1a_M_contig95.17472.1|Name=mRNA_E-siliculosus-1a_M_contig95.17472.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=912bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:57967..59542+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CACGTGTGTGGAGGCAGTCCATGCCGTGTCTTGGTTGTGGGCCAAAGATG
CTCCATCCACCGCCCGCCCTGTCAAGGGCACCAGCACGACCCGGACTACC
TGTGGACATTGGTCTTTGATGGTGTCGCTCATGAAGCCGGGGGGCGGAGC
CCGCCGTTCGAAATTGGCGGCCATTTTCAGCACGTGTGTGGAGGCAGTCC
ATGCCGTGTCTTGGTTGTGGGCCAAAGATGCTCCATCCACCGCCCGCCCT
GTCAAGGGCACCAGCACGACCCGGACTACCTGTGGACATTGGTCTTTGAT
GGTGTCGCTCATGAAGCCGGGGGGCGGAGCCCGCCGTTCGAAATTGGCGG
CCATTTTCAGGTATTCCGCGAAGCCTTCATCGATCGAATTCATCGTGATC
AACGGTCCTGGTGTTGGGGGCGGAGAGGGGGTTTTCGGGCCACTTCCGTT
GTCATTGACGGAGCGGATCCATGGCGGCGCACGCAGGCCAGCTTCGATAG
AGTGTTCGGCGGTGGCAACATCAGCAACAGCAACGGCAACACATCAGAGG
TCGAAATGACTATGCTAGGTTACGCCTGGTACGCGTTGAGGTTTTCGGGA
ACGTGCCATGTTCACGTTGTTTGTTTTATCCTATAGGTATTCCGCGAAGC
CTTCATCGATCGAATTCATCGTGATCAACGGTCCTGGTGTTGGGGGCGGA
GAGGGGGTTTTCGGGCCACTTCCGTTGTCATTGACGGAGCGGATCCATGG
CGGCGCACGCAGGCCAGCTTCGATAGAGTGTTCGGCGGTGGCAACATCAG
CAACAGCAACGGCAACACATCAGAGGTCGAAATGACTATGCTAGGTTACG
CCTGGTACGCGTTGAGGTTTTCGGGAACGTGCCATGTTCACGTTGTTTGT
TTTATCCTATAG back to top
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