mRNA_E-siliculosus-1a_M_contig95.17469.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig95.17469.1 vs. uniprot
Match: D8LKS0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKS0_ECTSI) HSP 1 Score: 1059 bits (2739), Expect = 0.000e+0 Identity = 580/694 (83.57%), Postives = 596/694 (85.88%), Query Frame = 2 Query: 263 MMKERAIIIKALSEVSAFGPLDRATLEHIADGTSERAVPDGEVVAAQDALATEFYIVVSGVIRVSRRAVLTEGATGRSEEVNRLLAGSNFGAGELLAGEQYSTTYEAAGPVTLAVMGVNDFHACTDRAIVNKSNTSGVGGGSSESSVTDEELEEGSTGEGGARGGAMTLAGGGGNAFPDRVANAVNRVPIFAPLSMEQKRLVSHALLEVHFRPGLYICEEGKPGSSFHIITSGTCRVTIHDPNAPGQRREVTKLHQDDFFGEVALLESGLRTATVVAETDVTCLSLTRRHFDLYLKPIKAAILESAAAKELQVLQMDEDEFDDDIEDEFDGKPDKARNSGVGDXXXXXXXXXXXDRGEKKGGGGNPGAGGSRSFRNPRRGGRRRKRITSFRGVATHALRVQRRARINFYDRFADDMSIPLSPTKDSRRASRRLSGISGQLRGSQSNGTGGGGRWILAKAATVATNIEGLTKSRATLVVRTIARMMVLALENDVYGMLLDEMIDRPTTLPECNKIVSKVLCEDLRKWDVAYDLIRATARRGLRKTSTRLKEGELAVLSGMFRIHPLLRQRHCTDWPEYHWSEVCKHMRLEEVRSLDKVYVHGAHGTKCYVLLRGLARVLQSEEDPDTGVVRYVPDADLGPGDLFGDDVLRGVPKRPNSVVAVTDCEFAVLDESDYAAVKDRGLSQMSLDDKCHFL 2344
MMKERAIIIKALSEVSAFGPLDRATLEHIADGTSERAVPDGEVVAAQDALATE G+ G + G GE A + A+G +DEELEEGS GEG A AMTLAGGGGNAFPDRVANAVNRVPIFAPLSMEQKRLVSHALLEVHFRPGLYICEEGKPGSSFHIITSGTCRVTIHDPNAPGQRREVTKLHQDDFFGEVALLESGLRTATVVAETDVTCLSLTRRHFDLYLKPIKAAILESAAAKELQVLQMDEDEFDDDIED+FDGKPDKARNSGVGD XXXXXXXXXDRGE+KGGGG PGAGGSRSFRNPRRGGRRRKRITSFRGVATHALRVQRRARINFYDRF+DD+SIPLSP KDSRRASRRLSGISG+LRGSQSNGT G GRW+LAKAATVAT+IE LTKSRATLVVRTIARMMVLALEND YG+LLDEMIDRPTTLPECNKIVSKVLCEDLRKWDVAYDLIRATARRGLRKTSTRLKEGELAVLSGMFRIHPLLRQRHCT+WPEYHWSEVCKHMRLEEVRSLDKVYVHGAHGTKCYVLLRGLARVLQ EEDP+TGVVRYVPDADLGPGDLFGDDVLRGVPKRPNSVVAVTDCEFAVLDESDY VKDRGLS+MSLDDKCHFL
Sbjct: 1 MMKERAIIIKALSEVSAFGPLDRATLEHIADGTSERAVPDGEVVAAQDALATE----------------PAGGSDGGCDGA--------VGGGEPAACGKQLRRRRASG--------------------------------------SDEELEEGSAGEGEAXXXAMTLAGGGGNAFPDRVANAVNRVPIFAPLSMEQKRLVSHALLEVHFRPGLYICEEGKPGSSFHIITSGTCRVTIHDPNAPGQRREVTKLHQDDFFGEVALLESGLRTATVVAETDVTCLSLTRRHFDLYLKPIKAAILESAAAKELQVLQMDEDEFDDDIEDQFDGKPDKARNSGVGDGAXXXXXXXXXDRGEEKGGGGTPGAGGSRSFRNPRRGGRRRKRITSFRGVATHALRVQRRARINFYDRFSDDVSIPLSPAKDSRRASRRLSGISGRLRGSQSNGTSGSGRWMLAKAATVATDIEALTKSRATLVVRTIARMMVLALENDAYGILLDEMIDRPTTLPECNKIVSKVLCEDLRKWDVAYDLIRATARRGLRKTSTRLKEGELAVLSGMFRIHPLLRQRHCTEWPEYHWSEVCKHMRLEEVRSLDKVYVHGAHGTKCYVLLRGLARVLQPEEDPNTGVVRYVPDADLGPGDLFGDDVLRGVPKRPNSVVAVTDCEFAVLDESDYTTVKDRGLSKMSLDDKCHFL 632
BLAST of mRNA_E-siliculosus-1a_M_contig95.17469.1 vs. uniprot
Match: A0A835Z9P8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9P8_9STRA) HSP 1 Score: 302 bits (773), Expect = 5.720e-84 Identity = 194/582 (33.33%), Postives = 284/582 (48.80%), Query Frame = 2 Query: 815 VNRVPIFAPLSMEQKRLVSHALLEVHFRPGLYICEEGKPGSSFHIITSGTCRVTIHDPNAPGQRREVTKLHQDDFFGEVALLESGLRTATVVAETDVTCLSLTRRHFDLYLKPIK---------------------AAILESAAAKELQVLQMDEDEFDD---DIEDEFDGKPDKARNSGVGDXXXXXXXXXXXDRGEKKGGGGNPGAGGSRSFRNPRRGGRRRKRITSFRGVATHALRVQRRARINF---------YDRFADDMSIPLSPTKDSRRASRRLSGISGQLRGSQSNGTGGGGRWILAKAATVATNIEGLTKSRATLVVRTIARMMVLALENDVYGMLLDEMIDRPTTLPECNKIVSKVLCEDLRKWDVAYDLIRATARRGLRKTSTRLKEGELAVLSGMFR--------------------------------------IHPLLRQRHCTDWPEYHWSEVCKHMRLEEVRSLDKVYVHGAHGTKCYVLLRGLARVLQSEEDPDTGVVRYVPDADLGPGDLFGDDVLRGVPKRPNSVVAVTDCEFAVLDESDYAAVKDRGLSQMSLDDKCHFLK 2347
+N VP+F PL EQ+ V+ AL+E+ FRPG YICE+GKPG+SF+II G C+VT+HDP+ PGQ+REVTKLH DFFGEVAL+E +RTA+VVAET V CLSLTRRHF+ +L IK A ++E +A K+L + ++D+ +D IE+E KA RR+ + SF+G+A H L++Q R + F + A P + + A R+ + + + SQ G G W+ + A A DVY LL E++D P LPE +KI+++VL + + +W A +L+RAT L K + + EGE+A +S + + P LR+++ WP+Y W ++C+HM+LE+V S++ ++ + G+K Y++L GL R+L+ D TG R V +DL PGD+ GD VL GV R ++ VAV+ +D DY V+D G+S +S+DDK HFLK
Sbjct: 476 LNMVPVFEPLPAEQREQVASALVEMSFRPGAYICEQGKPGNSFYIIVEGVCKVTVHDPSVPGQQREVTKLHASDFFGEVALIEKSMRTASVVAETVVRCLSLTRRHFETHLSGIKXXXXXXXXXXXXXXXXXXXXXATLMEHSATKQLMAGEGNDDDANDLFHPIEEEGGTAAKKASKPSTA----------------------------------------RRQSMRSFQGIAMHVLKLQNRKQGTFARHPPYIEQHRGAAQHQRAPSAAAPEDDDAPRQRLSTNARRKASQDAMDCGPGAWLTKRVA--------------------------YAHSADVYQQLLAELVDHPANLPEHSKIMAEVLHKSVGEWAHAVELLRATVTSALSKRHSHVTEGEVAAVSAVXXXXXXXXXXXXXVRPALRHNKXXXXXXXXXXXXXXXXXXMRPALRRKYAKGWPDYQWLDLCRHMQLEQVESMETIFAAESQGSKAYLVLTGLVRLLERVVDDSTGTARLVYHSDLCPGDVLGDGVLDGVRTRHHTAVAVSRATLLSVDVEDYLRVRDHGVSLLSVDDKFHFLK 991
BLAST of mRNA_E-siliculosus-1a_M_contig95.17469.1 vs. uniprot
Match: A0A482T0W6_9ARCH (Cyclic nucleotide-binding domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482T0W6_9ARCH) HSP 1 Score: 98.2 bits (243), Expect = 3.960e-18 Identity = 51/136 (37.50%), Postives = 82/136 (60.29%), Query Frame = 2 Query: 809 NAVNRVPIFAPLSMEQKRLVSHALLEVHFRPGLYICEEGKPGSSFHIITSGTCRVTIHDPNAPGQRREVTKLHQDDFFGEVALLE-SGLRTATVVAETDVTCLSLTRRHFDLYLKPIKAAILESAAAKELQVLQMD 1213
+ ++ VP+F ++ K+ + A++ + + PG YIC +G G+SF I+T G CRVTI+ + R+V L DFFGEVAL+E S RTA V++ V+CL+L+R F+ L+ +K I+E A + V + +
Sbjct: 73 DVLDTVPLFKNMTSVNKKKLLEAMIPMTYLPGSYICRQGTTGNSFFILTEGGCRVTIN--TSDHNERDVATLRAGDFFGEVALIEASNRRTANVISNNTVSCLTLSRSDFNRMLRNLKVKIMEHQAMRNASVQKTE 206
BLAST of mRNA_E-siliculosus-1a_M_contig95.17469.1 vs. uniprot
Match: A0A7S2G2W4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G2W4_9STRA) HSP 1 Score: 95.5 bits (236), Expect = 1.520e-16 Identity = 52/217 (23.96%), Postives = 109/217 (50.23%), Query Frame = 2 Query: 1697 RTIARMMVLALENDVYGMLLDEMIDRPTTLPECNKIVSKVLCEDLRKWDVAYDLIRATARRGLRKTSTRLKEGELAVLSGMFRIHPLLRQRHCTDWPEYHWSEVCKHMRLEEVRSLDKVYVHGAHGTKCYVLLRGLARVLQSEEDPDTGVVRYVPDADLGPGDLFGDDVLRGVPKRPNSVVAVTDCEFAVLDESDYAAVKDRGLSQMSLDDKCHFLK 2347
R +A ++ D + L++E++ PT + + + + + R++ + + L+ + L K + +L+++ G+ + L++++C WP+Y ++++C+H + E ++ D +Y + A GT +++LRG + + DTG V + PG FGD L G+ R + A +D ++ +Y + D G S +S+D K FL+
Sbjct: 459 RNLANLIAKNYGTDSFQRLVNEVLRSPTHMNKYGAACTAIFLSNNREFSLKH-LLHQQFVKALAKPHFERSDSDLSMVVGITKQKNQLQEKYCAAWPQYQYADLCRHFQYREYKADDVIYDYNARGTTIFIVLRGTVSLTKQVVSKDTGNKERVFIRHVSPGGCFGDAALAGMNMREYTARATSDVICVDFEQIEYQKIVDHGHSTISVDAKFQFLR 674
BLAST of mRNA_E-siliculosus-1a_M_contig95.17469.1 vs. uniprot
Match: A0A537Z8H6_9ACTN (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A537Z8H6_9ACTN) HSP 1 Score: 82.8 bits (203), Expect = 4.250e-14 Identity = 51/123 (41.46%), Postives = 69/123 (56.10%), Query Frame = 2 Query: 806 ANAVNRVPIFAPLSMEQKRLVSHALLEVHFRPGLYICEEGKPGSSFH-IITSGTCRVTIHDPNAPGQRREVTKLHQDDFFGEVALLESGLRTATVVAETDVTCLSLTRRHF-DLYLKPIKAAI 1168
A ++ VP+FA LS R V+ E F PG + +EGKPGSSF+ +I GT RVT R + KL D+FGE+ALL G RTA+V+AET + + + R F L LK + A+
Sbjct: 92 ARLLSNVPLFAGLSARDLRRVAGLAEETWFNPGRIVVQEGKPGSSFYAVILDGTARVTRRG-------RTIRKLRPGDYFGELALLTGGPRTASVIAETSLDTIRIQRSAFRKLLLKEPEVAL 207
BLAST of mRNA_E-siliculosus-1a_M_contig95.17469.1 vs. uniprot
Match: A0A537Y0H2_9ACTN (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A537Y0H2_9ACTN) HSP 1 Score: 82.0 bits (201), Expect = 5.720e-14 Identity = 51/123 (41.46%), Postives = 69/123 (56.10%), Query Frame = 2 Query: 806 ANAVNRVPIFAPLSMEQKRLVSHALLEVHFRPGLYICEEGKPGSSFH-IITSGTCRVTIHDPNAPGQRREVTKLHQDDFFGEVALLESGLRTATVVAETDVTCLSLTRRHF-DLYLKPIKAAI 1168
A ++ VP+FA LS R V+ E F PG + +EGKPGSSF+ +I GT RVT R + KL D+FGE+ALL G RTA+V+AET + + + R F L LK + A+
Sbjct: 77 ARLLSNVPLFAGLSARDLRRVAGLAEETWFNPGRIVVQEGKPGSSFYAVILDGTARVTRRG-------RTIRKLGPGDYFGELALLTGGPRTASVIAETSLDTIRIQRSAFRKLLLKEPEVAL 192
BLAST of mRNA_E-siliculosus-1a_M_contig95.17469.1 vs. uniprot
Match: A0A2H5WEN1_9BACT (Cyclic nucleotide-gated potassium channel n=1 Tax=bacterium HR12 TaxID=2035407 RepID=A0A2H5WEN1_9BACT) HSP 1 Score: 77.8 bits (190), Expect = 3.030e-13 Identity = 49/109 (44.95%), Postives = 60/109 (55.05%), Query Frame = 2 Query: 797 DRVANAVNRVPIFAPLSMEQKRLVSHALLEVHFRPGLYICEEGKPGSSFHIITSGTCRVTIHDPNAPGQRREVTKLHQDDFFGEVALLESGLRTATVVAETDVTCLSLT 1123
D VA N VPIF+ S + LV+ + V R G I EG+PG +I G C VT+ G+RR KL DFFGE+ALL+ G RTATV A TDVT +T
Sbjct: 5 DIVARLAN-VPIFSGCSKRELALVARSAKTVTHRKGTVIAREGEPGVGLFVILEGECEVTVG-----GRRRG--KLGPGDFFGEIALLDGGPRTATVTALTDVTLAGIT 105
BLAST of mRNA_E-siliculosus-1a_M_contig95.17469.1 vs. uniprot
Match: A0A3N5TT75_9ACTN (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A3N5TT75_9ACTN) HSP 1 Score: 77.4 bits (189), Expect = 4.250e-13 Identity = 43/117 (36.75%), Postives = 70/117 (59.83%), Query Frame = 2 Query: 800 RVANAVNRVPIFAPLSMEQKRLVSHALLEVHFRPGLYICEEGKPGSSFHIITSGTCRVTIHDPNAPGQRREVTKLHQDDFFGEVALLESGLRTATVVAETDVTCLSLTRRHFDLYLK 1150
R +A+ +VP+F + + ++ + E F G I EG+PG +F++I G +V D N R +++L DFFGE++L++ G RTATVVAET++T L+L+R+ F L+
Sbjct: 4 RARDALGQVPLFNGVPSRFLKHLADKMDEQRFMEGAVIVREGEPGDAFYVIVQGEAKVK--DRNG----RTLSRLIPGDFFGEISLMDGGPRTATVVAETNLTALALSRQDFAKLLR 114
BLAST of mRNA_E-siliculosus-1a_M_contig95.17469.1 vs. uniprot
Match: A0A1V5WFT9_9CHLR (Acetyltransferase Pat n=1 Tax=Chloroflexi bacterium ADurb.Bin222 TaxID=1852858 RepID=A0A1V5WFT9_9CHLR) HSP 1 Score: 77.4 bits (189), Expect = 4.710e-13 Identity = 48/142 (33.80%), Postives = 71/142 (50.00%), Query Frame = 2 Query: 794 PDRVANAVNRVPIFAPLSMEQKRLVSHALLEVHFRPGLYICEEGKPGSSFHIITSGTCRVTIHDPNAPGQRREVTKLHQDDFFGEVALLESGLRTATVVAETDVTCLSLTRRHFDLYLKP---IKAAILESAAAKELQVLQM 1210
P A + R P+F L+ Q ++ +E + G I +G+ G F I+ SG R +A G+R + L DFFGE+ALL G+RTA+V+ TCL LTR F L+ + AIL+ A + +VL +
Sbjct: 4 PKMTAQVLQRTPLFTNLNQRQLERLAKRFVEREYAAGEKIVTQGRGGEGFFIVASG--RAEAVREHADGERTVLNPLEPGDFFGEMALLTEGMRTASVITTEPTTCLILTRWDFLSLLREDADMAVAILQELAERFSRVLSV 143
BLAST of mRNA_E-siliculosus-1a_M_contig95.17469.1 vs. uniprot
Match: A0A7K0A6K6_9ACTN (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7K0A6K6_9ACTN) HSP 1 Score: 76.6 bits (187), Expect = 8.740e-13 Identity = 50/131 (38.17%), Postives = 74/131 (56.49%), Query Frame = 2 Query: 806 ANAVNRVPIFAPLSMEQKRLVSHALLEVHFRPGLYICEEGKPGSSFHIITSGTCRVTIHDPNAPGQRREVTKLHQDDFFGEVALLESGLRTATVVAETDVTCLSLTRRHFDLYLK--PIKAA-ILESAAAK 1189
A+A+ VP+ A L+ +Q R++ EV F G +C+EG+ G+ H+I G +V + G+ R +L F+GE+ALL+ G RTATVVAETD LS+ +F +K P A +LE AA+
Sbjct: 11 ASALRGVPLLAGLNDKQLRIIERQAKEVTFSEGKVLCKEGEMGTGLHVILEGETKVQVR-----GRTRR--RLGPGAFYGEIALLDGGPRTATVVAETDGRLLSIPVWNFKNLIKEYPTMALKMLEEVAAR 134 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig95.17469.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig95.17469.1 >prot_E-siliculosus-1a_M_contig95.17469.1 ID=prot_E-siliculosus-1a_M_contig95.17469.1|Name=mRNA_E-siliculosus-1a_M_contig95.17469.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=781bp MKPPEPCGGTMRRNHAAQPGHHHNCDNSIRCEPWRTGRERQSPSHACAPMback to top mRNA from alignment at E-siliculosus-1a_M_contig95:25940..39377+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig95.17469.1 ID=mRNA_E-siliculosus-1a_M_contig95.17469.1|Name=mRNA_E-siliculosus-1a_M_contig95.17469.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=13438bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:25940..39377+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig95:25940..39377+ >mRNA_E-siliculosus-1a_M_contig95.17469.1 ID=mRNA_E-siliculosus-1a_M_contig95.17469.1|Name=mRNA_E-siliculosus-1a_M_contig95.17469.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=4686bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig95:25940..39377+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |