mRNA_E-siliculosus-1a_M_contig944.17464.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig944.17464.1 vs. uniprot
Match: A0A2Z4HGD5_9EUKA (Uncharacterized protein n=1 Tax=Cyanophora sudae TaxID=1522369 RepID=A0A2Z4HGD5_9EUKA) HSP 1 Score: 89.4 bits (220), Expect = 4.140e-22 Identity = 42/53 (79.25%), Postives = 46/53 (86.79%), Query Frame = 1 Query: 1 YAALAIVSNCYSPPKGKFSRVTHPSATKVLTLSYDLHV*SIPPAFILSQDQTL 159 Y LA+VSNC PPKG+FSRVTHPSATK+L S+DLHV SIPPAFILSQDQTL Sbjct: 35 YGVLAVVSNCCPPPKGRFSRVTHPSATKILRSSFDLHVLSIPPAFILSQDQTL 87
BLAST of mRNA_E-siliculosus-1a_M_contig944.17464.1 vs. uniprot
Match: A0A212LM72_9HYPH (Uncharacterized protein n=1 Tax=uncultured Pleomorphomonas sp. TaxID=442121 RepID=A0A212LM72_9HYPH) HSP 1 Score: 70.5 bits (171), Expect = 1.540e-13 Identity = 34/53 (64.15%), Postives = 40/53 (75.47%), Query Frame = 1 Query: 1 YAALAIVSNCYSPPKGKFSRVTHPSATKVLTLSYDLHV*SIPPAFILSQDQTL 159 + LA +S YS PKG F RVTHPSAT L ++DLHV S+PPAF+LSQDQTL Sbjct: 41 HPVLAEISLSYSEPKGMFPRVTHPSATPALLRAFDLHVLSLPPAFVLSQDQTL 93
BLAST of mRNA_E-siliculosus-1a_M_contig944.17464.1 vs. uniprot
Match: A0A212LKU8_9HYPH (Uncharacterized protein n=2 Tax=uncultured Pleomorphomonas sp. TaxID=442121 RepID=A0A212LKU8_9HYPH) HSP 1 Score: 70.5 bits (171), Expect = 2.110e-13 Identity = 34/53 (64.15%), Postives = 40/53 (75.47%), Query Frame = 1 Query: 1 YAALAIVSNCYSPPKGKFSRVTHPSATKVLTLSYDLHV*SIPPAFILSQDQTL 159 + LA +S YS PKG F RVTHPSAT L ++DLHV S+PPAF+LSQDQTL Sbjct: 41 HPVLAEISLSYSEPKGMFPRVTHPSATPALLRAFDLHVLSLPPAFVLSQDQTL 93
BLAST of mRNA_E-siliculosus-1a_M_contig944.17464.1 vs. uniprot
Match: A0A1H9GND4_9PROT (Uncharacterized protein n=1 Tax=Nitrosomonas ureae TaxID=44577 RepID=A0A1H9GND4_9PROT) HSP 1 Score: 55.8 bits (133), Expect = 2.840e-9 Identity = 30/51 (58.82%), Postives = 35/51 (68.63%), Query Frame = -1 Query: 13 LILAQDERWRYALHMQVVRK--C*NF--SGGRVSNT*EFTFRWGITIGNDC 153 +ILAQ ERWR+ALHMQV R+ C + SGGRVSNT E +WGIT C Sbjct: 1 MILAQIERWRHALHMQVERQHGCLHLVASGGRVSNTSERVLKWGITHRKMC 51
BLAST of mRNA_E-siliculosus-1a_M_contig944.17464.1 vs. uniprot
Match: A0A7J8PTL5_GOSRA (Uncharacterized protein (Fragment) n=1 Tax=Gossypium raimondii TaxID=29730 RepID=A0A7J8PTL5_GOSRA) HSP 1 Score: 57.0 bits (136), Expect = 3.860e-9 Identity = 31/53 (58.49%), Postives = 35/53 (66.04%), Query Frame = 1 Query: 1 YAALAIVSNCYSPPKGKFSRVTHPSATKVLTLSYDLHV*SIPPAFILSQDQTL 159 Y LA+VSN S PKG+F RVTHPS DLH+ S+ P FILSQDQTL Sbjct: 50 YEVLAVVSNYCSTPKGRFLRVTHPS---------DLHMLSMSPTFILSQDQTL 93
BLAST of mRNA_E-siliculosus-1a_M_contig944.17464.1 vs. uniprot
Match: A0A0D2T5Z7_GOSRA (Uncharacterized protein n=1 Tax=Gossypium raimondii TaxID=29730 RepID=A0A0D2T5Z7_GOSRA) HSP 1 Score: 57.0 bits (136), Expect = 5.220e-9 Identity = 31/53 (58.49%), Postives = 35/53 (66.04%), Query Frame = 1 Query: 1 YAALAIVSNCYSPPKGKFSRVTHPSATKVLTLSYDLHV*SIPPAFILSQDQTL 159 Y LA+VSN S PKG+F RVTHPS DLH+ S+ P FILSQDQTL Sbjct: 16 YEVLAVVSNYCSTPKGRFLRVTHPS---------DLHMLSMSPTFILSQDQTL 59
BLAST of mRNA_E-siliculosus-1a_M_contig944.17464.1 vs. uniprot
Match: A0A1F7QY20_9BACT (Uncharacterized protein n=1 Tax=Candidatus Saccharibacteria bacterium RIFCSPHIGHO2_12_FULL_42_8 TaxID=1802139 RepID=A0A1F7QY20_9BACT) HSP 1 Score: 53.1 bits (126), Expect = 4.260e-8 Identity = 31/55 (56.36%), Postives = 34/55 (61.82%), Query Frame = 1 Query: 1 YAALAIVSNCYSPPKGKFSRVTHPSATKV--LTLSYDLHV*SIPPAFILSQDQTL 159 YA L VS+ Y G+F RVT P A +V L DLHV PPAFILSQDQTL Sbjct: 5 YAVLDTVSDAYPSLWGEFPRVTQPFAARVPRRALPLDLHVLGTPPAFILSQDQTL 59
BLAST of mRNA_E-siliculosus-1a_M_contig944.17464.1 vs. uniprot
Match: A0A2N9CJ98_9BURK (Uncharacterized protein n=1 Tax=Burkholderia cenocepacia TaxID=95486 RepID=A0A2N9CJ98_9BURK) HSP 1 Score: 53.1 bits (126), Expect = 1.270e-7 Identity = 30/56 (53.57%), Postives = 33/56 (58.93%), Query Frame = 3 Query: 3 CGISNRFQLLFPT*R*ILTCYSPVRH*----SFNTFVRLACVKHTASVHPEPGSNS 158 CGI+ F L PT + YSPVRH S VRLACV+H ASV EPGSNS Sbjct: 46 CGINPAFAGLSPTTGHVPMYYSPVRHSPPGASTRAAVRLACVRHAASVQSEPGSNS 101
BLAST of mRNA_E-siliculosus-1a_M_contig944.17464.1 vs. uniprot
Match: A0A3B9NXX7_9PROT (Uncharacterized protein n=1 Tax=Gallionellaceae bacterium TaxID=2052162 RepID=A0A3B9NXX7_9PROT) HSP 1 Score: 51.6 bits (122), Expect = 1.900e-7 Identity = 29/48 (60.42%), Postives = 34/48 (70.83%), Query Frame = -1 Query: 28 ESLILAQDERWRYALHMQVVRK--C*NF--SGGRVSNT*EFTFRWGIT 159 +SLILAQ ERWR+ALHMQV R+ C + SG RVSN E +WGIT Sbjct: 19 KSLILAQIERWRHALHMQVERQHGCLHLMASGERVSNISEHIRKWGIT 66
BLAST of mRNA_E-siliculosus-1a_M_contig944.17464.1 vs. uniprot
Match: A0A8D6XTT1_STRTR (Uncharacterized protein n=2 Tax=Streptococcus thermophilus TaxID=1308 RepID=A0A8D6XTT1_STRTR) HSP 1 Score: 51.2 bits (121), Expect = 7.490e-7 Identity = 30/58 (51.72%), Postives = 40/58 (68.97%), Query Frame = 1 Query: 1 YAALAIVSNCYSPPKGK----FSRVTHPSA-TKVLTLSYDLHV*SIPPAFILSQDQTL 159 YA LAIVSN Y P +G+ +S V + S +K+L+ ++ LHV PPAF+LSQDQTL Sbjct: 8 YAVLAIVSNSYPPLQGRLPTRYSPVRNSSKKSKLLSSAFYLHVLGTPPAFVLSQDQTL 65 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig944.17464.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig944.17464.1 >prot_E-siliculosus-1a_M_contig944.17464.1 ID=prot_E-siliculosus-1a_M_contig944.17464.1|Name=mRNA_E-siliculosus-1a_M_contig944.17464.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=39bp YAALAIVSNCYSPPKGKFSRVTHPSATKVLTLSYDLHV*back to top mRNA from alignment at E-siliculosus-1a_M_contig944:4013..4171+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig944.17464.1 ID=mRNA_E-siliculosus-1a_M_contig944.17464.1|Name=mRNA_E-siliculosus-1a_M_contig944.17464.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=159bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig944:4013..4171+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig944:4013..4171+ >mRNA_E-siliculosus-1a_M_contig944.17464.1 ID=mRNA_E-siliculosus-1a_M_contig944.17464.1|Name=mRNA_E-siliculosus-1a_M_contig944.17464.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=234bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig944:4013..4171+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |