mRNA_E-siliculosus-1a_M_contig94.17458.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig94.17458.1 vs. uniprot
Match: D7FU27_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU27_ECTSI) HSP 1 Score: 1229 bits (3181), Expect = 0.000e+0 Identity = 744/873 (85.22%), Postives = 762/873 (87.29%), Query Frame = 1 Query: 1 CAAEVLPGGLSKGSDGGLETTTVAEATTRDLLRSPPSSWNPGGDGRVRKPAQSPRSPSRWATSARDLLTGLTSSPSPPRPLRFSVGSGGGGFARRNSAGGGRAGKGAVAAADGVLLASRVLAGVTEVHAEGVEAALALFRRGLRNRRKEGHVVISARLVSVGGSDKRVDKKRVPDSASETGELVFVELGDCPNGDLPQTLRTALAHLKVGNHGLGRVDPRAPRSSRLATTKKAAGVSPPLSEQSSGNXVRXXXXGLRHDPLWALLSAFAQAGTGGADTLLSCPTTVTGEGGGGADLRPSTSHSPRREVAVTGTMRGPRTGEGGAARGASVGRGPLVVSVIATLRSGDGRFQEEKALLQIMVSMPSFSWRSSPTGPAGTAXXXXXXXXVAYGSXXXXXXXXXXXXXXXXXXEASVARSNSAFSRSASXXXXXXXXXXXXXXXXXXXXDAGGDVIVSSGAADGGFGPPTFPSSRVASLTAEEDVVCGVGTNSTPFGNGSGSTARAVGGNLALQNLGELATGGGHDSARTGGQRSGSASRYRFSIEEADEEAAKAGGTMKASWENKSSERRMSPPWDDSMLGLRGLTPDELVARVLQAEKESRHWQAQHALVDRKLTDLLTAMTKHSRRPGGDGGRNVYSGGSLHGETA--RDDRIEGASIAAGARGVEGRDGVKVCYSGFGXXXXXXXXXXXXXXLPDSKRSLAXXXXXXXXXXXXXXXXXXXXXVEDAWKERPPGVGPWPLFEQTREGRASLDDKLRVSNRGSVGSSGGTRKIESSTAPETNGEPTATAPGGDGGKALGKSNRDYGTPYGDE*DRGRRNARPQQWWRASPQPILRGVQADGAGWVGPSQVTVWCLGRGSLDVFQASSEQRPWDV 2613
C +EVLPGGLSKGS GGLETTTVAEATTRDLLRSPPSSWNPGGDGR RK AQSPRSPS WATSARDLLTGLTSSPSPPRPLRFSVGSGGGGF RRNS GGGR GKGAVAAADGVLLASRVLAGVTEVHA+GVEAALALFRRGLRNRRKEGHVVISARLVSVGGSDKRVDKKRV DSA ETGELVFVELGDCPNGDLPQTLRTALAHLKVGNHGLG VDPRAPRSSRLATTKKAAGVSPPLSEQS GN VR GLRHDPLWALLSAFAQAGTGGADT L P TVT EGGG ADLRPST HSPR EVA+TGTMRGPR GEGGAARGA+VGRGPLVVSV+ATLRSGDGRFQEEKALLQIMVSMPSFSWRSSPTGPAGTAXXXXXXXX AYGSXXXXXXXXXXXXXXXXXX R XXXXXXXXXXXXXXXXXXXX GDVIVSSGAADGGF PPTFPSS SLT EEDVVCGVG +STPFGNGSGSTA+AVGGNLALQNLG+LAT GGHDSARTGG RSGS S +RFSIEEADEEA KAGGTMKAS EN++SERRMSPPWDDSMLGLRGLTPDELVARVLQAEKESRHWQAQHALVDRKLT+LLTAMTKHSRRPGGDGGR+VYSGGSL+ + DDRIEGAS+AAG R V GRDGVKV Y FG XXXXXXXXXXXX LPDSKRSLA XXXXXXXXXXX VEDAWKERPPGVGPWPLFEQTREGRASLDDKLRVSNRGS GS GGTRK ESST PET PGGDGGKALGK NRDYGTPYGDE DRGR+NARPQ PILRGVQADG GWVGPSQ TVWC DVFQAS+EQRPWDV
Sbjct: 15 CVSEVLPGGLSKGSGGGLETTTVAEATTRDLLRSPPSSWNPGGDGRGRKAAQSPRSPSTWATSARDLLTGLTSSPSPPRPLRFSVGSGGGGFGRRNSVGGGRPGKGAVAAADGVLLASRVLAGVTEVHADGVEAALALFRRGLRNRRKEGHVVISARLVSVGGSDKRVDKKRVLDSALETGELVFVELGDCPNGDLPQTLRTALAHLKVGNHGLGGVDPRAPRSSRLATTKKAAGVSPPLSEQSGGNNVRDGGGGLRHDPLWALLSAFAQAGTGGADTHLRSPMTVTDEGGGRADLRPSTPHSPR-EVAITGTMRGPRAGEGGAARGAAVGRGPLVVSVMATLRSGDGRFQEEKALLQIMVSMPSFSWRSSPTGPAGTAXXXXXXXXXAYGSXXXXXXXXXXXXXXXXXXXXXXXRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDVIVSSGAADGGFCPPTFPSSGATSLTTEEDVVCGVGNSSTPFGNGSGSTAQAVGGNLALQNLGDLATCGGHDSARTGGDRSGSVSSHRFSIEEADEEAGKAGGTMKASSENQNSERRMSPPWDDSMLGLRGLTPDELVARVLQAEKESRHWQAQHALVDRKLTNLLTAMTKHSRRPGGDGGRSVYSGGSLNADRGDGEDDRIEGASLAAGTRDVAGRDGVKVRYGSFGGXXXXXXXXXXXXELPDSKRSLASHQDDVAXXXXXXXXXXXSGSVEDAWKERPPGVGPWPLFEQTREGRASLDDKLRVSNRGSAGSGGGTRKFESSTPPETK------EPGGDGGKALGKPNRDYGTPYGDEQDRGRQNARPQ--------PILRGVQADGTGWVGPSQATVWCWEGAVPDVFQASTEQRPWDV 872
BLAST of mRNA_E-siliculosus-1a_M_contig94.17458.1 vs. uniprot
Match: A0A6H5KRU7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRU7_9PHAE) HSP 1 Score: 377 bits (968), Expect = 5.820e-111 Identity = 252/287 (87.80%), Postives = 259/287 (90.24%), Query Frame = 1 Query: 1078 MVSMPSFSWRSSPTGPAGTAXXXXXXXXVAYGSXXXXXXXXXXXXXXXXXXEASVARSNSAFSRSASXXXXXXXXXXXXXXXXXXXXDAGGDVIVSSGAADGGFGPPTFPSSRVASLTAEEDVVCGVGTNSTPFGNGSGSTARAVGGNLALQNLGELATGGGHDSARTGGQRSGSASRYRFSIEEADEEAAKAGGTMKASWENKSSERRMSPPWDDSMLGLRGLTPDELVARVLQAEKESRHWQAQHALVDRKLTDLLTAMTKHSRRPGGDGGRNVYSGGSLHGETA 1938
MVSMPSFSWRSSPTGPAGTA XXXXXXX Y XXXXXXXXXXXXXXXXXXEASVARSNS FSRSA XXXXXXXXXXXXXXXXX AGGD IVSSGA DG FGPPTFPSS ASLTAEEDVVCGVG +STPFGNGSGSTA+AVGGNLAL NLGELATG GHDSARTGG+ SGS S YR SIEEADEE KAGGTMKAS EN++SERRMSPPWDDSMLGLRGLTPDELVARVLQAEKESRHWQAQHALVDRKLTDLLTAMTKHSRRPGGDG NV+SGGSL+GETA
Sbjct: 1 MVSMPSFSWRSSPTGPAGTAAXXXXXXXXXYXXXXXXXXXXXXXXXXXXXXEASVARSNSTFSRSAXXXXXXXXXXXXXXXXXXIG--AGGDGIVSSGAVDGDFGPPTFPSSGAASLTAEEDVVCGVGNSSTPFGNGSGSTAQAVGGNLALHNLGELATGRGHDSARTGGEPSGSVSSYRLSIEEADEEVEKAGGTMKASSENQNSERRMSPPWDDSMLGLRGLTPDELVARVLQAEKESRHWQAQHALVDRKLTDLLTAMTKHSRRPGGDGDCNVHSGGSLNGETA 285 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig94.17458.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig94.17458.1 >prot_E-siliculosus-1a_M_contig94.17458.1 ID=prot_E-siliculosus-1a_M_contig94.17458.1|Name=mRNA_E-siliculosus-1a_M_contig94.17458.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=497bp MRGPRTGEGGAARGASVGRGPLVVSVIATLRSGDGRFQEEKALLQIMVSMback to top mRNA from alignment at E-siliculosus-1a_M_contig94:603215..610550+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig94.17458.1 ID=mRNA_E-siliculosus-1a_M_contig94.17458.1|Name=mRNA_E-siliculosus-1a_M_contig94.17458.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=7336bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig94:603215..610550+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig94:603215..610550+ >mRNA_E-siliculosus-1a_M_contig94.17458.1 ID=mRNA_E-siliculosus-1a_M_contig94.17458.1|Name=mRNA_E-siliculosus-1a_M_contig94.17458.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=2982bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig94:603215..610550+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |