mRNA_E-siliculosus-1a_M_contig94.17456.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig94.17456.1 vs. uniprot
Match: A0A6H5JPV0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPV0_9PHAE) HSP 1 Score: 119 bits (298), Expect = 1.400e-29 Identity = 58/96 (60.42%), Postives = 73/96 (76.04%), Query Frame = 1 Query: 46 VSQLLRAIYFAGLRAYGVKISRIVQCCGSEELERGPFHLGPWSGLLPAAGLLLSLSTTQFLTAPHLTATKCSQSYHKGLAARVAARIVQARLGEKG 333
+S+ +RA+YFA L A VK++RIVQ CGSE+L +GPFHL PW P AG LL+L TT F ++PH TATK S+SYH GLAA+ AA+I +ARLGE G
Sbjct: 266 LSEFVRALYFAALDANDVKVTRIVQSCGSEDLAKGPFHLAPWLERFPVAGHLLNLPTTPFFSSPHRTATKTSKSYHPGLAAKAAAQIFRARLGEAG 361
BLAST of mRNA_E-siliculosus-1a_M_contig94.17456.1 vs. uniprot
Match: A0A6H5L509_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L509_9PHAE) HSP 1 Score: 70.5 bits (171), Expect = 7.320e-12 Identity = 36/51 (70.59%), Postives = 43/51 (84.31%), Query Frame = 1 Query: 1 GSYSNPCAVDENVNSVSQLLRAIYFAGLRAYGVKISRIVQCCGSEELERGP 153
GS++NP A DENV+SVSQLLRA+YFAGL AYGVKI+RIVQC + E+GP
Sbjct: 134 GSHANPFARDENVDSVSQLLRAMYFAGLHAYGVKITRIVQC-RARSGEKGP 183 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig94.17456.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig94.17456.1 >prot_E-siliculosus-1a_M_contig94.17456.1 ID=prot_E-siliculosus-1a_M_contig94.17456.1|Name=mRNA_E-siliculosus-1a_M_contig94.17456.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=111bp GSYSNPCAVDENVNSVSQLLRAIYFAGLRAYGVKISRIVQCCGSEELERGback to top mRNA from alignment at E-siliculosus-1a_M_contig94:596154..596487+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig94.17456.1 ID=mRNA_E-siliculosus-1a_M_contig94.17456.1|Name=mRNA_E-siliculosus-1a_M_contig94.17456.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=334bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig94:596154..596487+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig94:596154..596487+ >mRNA_E-siliculosus-1a_M_contig94.17456.1 ID=mRNA_E-siliculosus-1a_M_contig94.17456.1|Name=mRNA_E-siliculosus-1a_M_contig94.17456.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=666bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig94:596154..596487+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |