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Homology
BLAST of mRNA_E-siliculosus-1a_M_contig94.17453.1 vs. uniprot
Match: D7FU30_ECTSI (zf-met2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FU30_ECTSI) HSP 1 Score: 83.6 bits (205), Expect = 8.170e-16 Identity = 38/39 (97.44%), Postives = 38/39 (97.44%), Query Frame = 2 Query: 1979 QVCRQSFMSVSNDAMLTDHVTAKHNKKKTPAECFPGRLS 2095
QVCRQSFMSVSNDAML DHVTAKHNKKKTPAECFPGRLS
Sbjct: 41 QVCRQSFMSVSNDAMLADHVTAKHNKKKTPAECFPGRLS 79
BLAST of mRNA_E-siliculosus-1a_M_contig94.17453.1 vs. uniprot
Match: Y2309_ARATH (Uncharacterized protein At2g23090 n=4 Tax=Camelineae TaxID=980083 RepID=Y2309_ARATH) HSP 1 Score: 52.8 bits (125), Expect = 5.570e-5 Identity = 31/46 (67.39%), Postives = 33/46 (71.74%), Query Frame = 2 Query: 488 MGGGNAQKSATARARNEAKKAKAGKGSQLAVNKAAQSIVCQVCFIT 625
MGGGNAQKSA ARA+N K AGKGSQL NK A SI C+VC T
Sbjct: 1 MGGGNAQKSAMARAKNLEKAKAAGKGSQLEANKKAMSIQCKVCMQT 46
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 321 |
| Model size | 3499 |
| Exons | 1 |
| Ec32 ortholog | Ec-27_001220.1 |
| Ec32 ortholog description | At2g23090 like |
| Hectar predicted targeting category | other localisation |
| Best eggNOG OG | NA|NA|NA |
| Best tax level | Eukaryota |
| COG Functional cat. | S |
| EggNOG OGs | 2DZSG@1,2SCN8@2759 |
| EggNOG free text desc. | Zinc-binding |
| Seed eggNOG ortholog | 2880.D7FU30 |
| Seed ortholog evalue | 1.5e-12 |
| Seed ortholog score | 79.0 |
| Taxonomic scope | Eukaryota |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622936506.073356-UTR-E-siliculosus-1a_M_contig94:574419..574906 | 1622936506.073356-UTR-E-siliculosus-1a_M_contig94:574419..574906 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig94 574420..574906 + |
| 1696251108.8342125-UTR-E-siliculosus-1a_M_contig94:574419..574906 | 1696251108.8342125-UTR-E-siliculosus-1a_M_contig94:574419..574906 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig94 574420..574906 + |
| 1622936506.1020567-UTR-E-siliculosus-1a_M_contig94:575227..577918 | 1622936506.1020567-UTR-E-siliculosus-1a_M_contig94:575227..577918 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig94 575228..577918 + |
| 1696251108.8671644-UTR-E-siliculosus-1a_M_contig94:575227..577918 | 1696251108.8671644-UTR-E-siliculosus-1a_M_contig94:575227..577918 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig94 575228..577918 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622936506.0875108-CDS-E-siliculosus-1a_M_contig94:574906..575227 | 1622936506.0875108-CDS-E-siliculosus-1a_M_contig94:574906..575227 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig94 574907..575227 + |
| 1696251108.8482854-CDS-E-siliculosus-1a_M_contig94:574906..575227 | 1696251108.8482854-CDS-E-siliculosus-1a_M_contig94:574906..575227 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig94 574907..575227 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig94.17453.1 >prot_E-siliculosus-1a_M_contig94.17453.1 ID=prot_E-siliculosus-1a_M_contig94.17453.1|Name=mRNA_E-siliculosus-1a_M_contig94.17453.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=107bp
MGGGNAQKSATARARNEAKKAKAGKGSQLAVNKAAQSIVCQVCFITQNGT
STSHYISAVMCPRAHQTRRVWVFPLFSWQMRSRWHVCRLQGELALRNVES
LDICSP* back to topmRNA from alignment at E-siliculosus-1a_M_contig94:574420..577918+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_M_contig94.17453.1 ID=mRNA_E-siliculosus-1a_M_contig94.17453.1|Name=mRNA_E-siliculosus-1a_M_contig94.17453.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=3499bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig94:574420..577918+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GACGTGTTGAACCTGCCTCTTCTCTCTCCCCCAAGGTGAGCTAACCGGCG
CGAACGGCTAGCCTAAACCCGAAAACAGGTGTTGGCGTTGGTATATTTCT
GTGTGGGCGCCTCTCGTTCTGTGTTGCTTTACTTTTTGGTCCAAGAAAGC
GCGGCGTATTTGCAGACGACGACACGACCATCACCCACAGCAGCAAGTGC
TTGATGGTGGCCCCGCTGCTTACAGACCATCGCTGACGCTGTTCAGATCA
AGAGAGAGCTTCGGCTGCTCTCTATTTACCCTCTGTATCTAGTCGCATCG
TTTCTCTTGTGCTATGTAGTTCCAAAACCTACCAATCTTTCTCTACTACA
GAGTATAGAGAGAGGTGGTTGCCTACGTAAGCAAGGGAGAGCACCCGGAT
CTCTCTTACAGCAGTAAAGGCCACCCTCGCTCGCCTCTCTGCAACCACGA
TCCCGTCGCAGTCTTGTGAACCGGACTCAAACAAGCCATGGGAGGAGGAA
ACGCCCAGAAGTCGGCCACCGCCCGCGCGCGGAACGAGGCGAAGAAGGCC
AAGGCCGGAAAGGGGTCTCAGCTTGCAGTCAACAAGGCCGCACAGAGCAT
CGTCTGCCAGGTGTGTTTTATTACACAAAATGGTACTTCTACATCTCACT
ACATCTCAGCCGTGATGTGTCCACGCGCGCACCAAACGAGGCGCGTGTGG
GTGTTTCCTCTATTTTCATGGCAGATGAGATCCAGATGGCACGTCTGCCG
TTTACAGGGAGAGCTTGCGTTACGTAACGTAGAAAGCTTGGACATTTGTT
CGCCATAGGCGGGCTTTGCACACATTCCAGCAGCGCCGAAAATGTGATCG
TTTTTTTTTGCGTTACACCGGGACGGACGTTTCTGCCTGTTGTTCGGCAC
CGCTGCAGTAGGCCTACCATGCATTAGAACCCGGGAGATGTCATTGCCGA
CTGGCGGCAAGCAATAAAAGGAAGGACTCGCTACAAGAAACAGCCTTTAA
CTTTCGATCCCTTGCTGTTGCCCCCTCGGCTCTTGGAGGTTCGACGTTAT
TTCTTTCACGGCAGTGGGTGTCCCCGAAGGAAGGGGGTGGTGGGGTAGCT
GATAACGACCGCCTTTAACGGCCTCTCGTTTAATGTTTAGGACAACATAT
TGTTTATGCCAGCCAATTTTCACCGCCTTGTTTTAAAGGGCGACCGCCTT
TGATTCATACCGCCTTATTCCGGAACCCCCATGGTACAGGCTTCTGCTTC
AGACCCGAGATACAGCCTGTAGTATTGCTGTATGCATAGAATGACTGCAA
CGATTTTCTTTGGATTGTTCTTGTCGAAGGCTGTTGGCTCACGTTAGTTC
CGCTTCTTCTCTGACCAACGCGACACCATGACCACAATTTTCTCTCTCTC
GCCACTATTTCATGTCGGCTGTCTTAGCGATCAGGTGTATCCGAAGGACG
CCCCGTCACCGGAGGTAGTCAGAATCCTCTAAACAACTGGGCTCGAATAT
CTTCGCTCGCACCGCCCTTGATAACGCCCGTTTTTGACAATTTGTGAACT
GCTGTTTTTCTCCCCGTGTGTGGTAACCGGGTGTTTAACTTGTGGTGTGT
GGACTTGGCCAATGGGAAGTCACATGTTATTAGGTAATCAGCCCCTCGTT
GGGGATGGAGTCCTGACATGGATCAATTGCCAATGCAGTCTTCGAGCTTT
CTCCGCTCATCGGCGTTCTGTAAGCGTCTCTTTGGACAGTTCAGACGGCC
CAGGGAGGCAGGTCATTTACGACCTCAATGCATCTTGATGCACATATTTT
TTGTCCTGAAGCTCGTTCCGTTCTACAGCAAGTAACATATACCAAAGCAC
CACTTAATTCCCCCGGGACTGTCGTTTATATCTTGAGATGTTCCCTGAGA
AGCAACATTAGCACCCCTCTTTCTCTTTGTCCCTCCTCTCTCTCTAAAAT
CAAACTACATATTTACGACCCCTCCCTCCAGGTCTGCCGCCAGTCGTTCA
TGTCCGTGTCCAACGACGCCATGCTCACAGACCACGTGACGGCCAAGCAT
AACAAGAAGAAGACCCCGGCCGAGTGCTTTCCGGGACGGCTGAGCTGATC
TACCTATCGTCGTGTTCTTATTTCCTCGCGTTATCTCCCACGGCAAACGA
GAACGCACGGGACAAGGAGGGCCACCTTTCTTCCAGGGTGGGGGGAAAAG
TTCACCGTTCCGCACAAGGACATGCGGGAAGAAGATGGTTTGAGTTCACC
ATTCCGCACAAGGGCATGGCTGGAGTTCACCACTCCGCACAAGGGCTTTG
GTGGCTATTTTGGTGGCTTTGGTGTTAATTTTCGGGGACAAGTTGTGCGG
GGATGAAAAAAATGCTACATATGTTCTCCGGCGGCATCCTCTTTTTTTTT
TGTGTTTTGTAGAGGTGGGGCCCGTGGAGCAGACACACGGGCGGCTGAGC
CTGACTTAAGAGCGCAGCGGTTGTGTGAGCAGGTGTTTTTGTTAGGGGGT
GAGTGAGAGGTTCGGACCGATTTCGCATATGTGCTCGCTGGTGTTGATAT
TTGCTGCGGATCCATGTGCGCGGTATTGTACGAAAAAGGAGAGCTCCCTT
TTGGAGGAAGATTGGTTGGGGGGTTGGGCCTGGTGGTGACAAGTGCTGGC
GGTGGAGTAAGCATGTGTAAAATTGGATTGAAGAGGAAACGGCCCTGAGA
AAGCGTGGAGAGTCTCCGGATTGGTTGCTTCCATTTCCGGGATACCTGTT
TTCATTACCGCGTGCTGGAGGAGTTGTAGTTCGTGCCGCACCGTCCGTGG
CCGCTTGTCCTTGGCGGGAAAGGCCAACACCCCTCGCAAGCATCGCTGCG
ATGCCACCCTCACCCCCCTCCCCCGGGGCGGACGCGTAAATTGTAGGGCT
TCCTAAAATAAATGCTAAATTGAAAGCTATTGATAGGTGACGAAATTGAG
AGATAGGTCCAGCTCGAGGCTGTGTCTGCAGGACCTGCCTAAAACATTAT
TTTCTTTGGAGTTGGGCACATTCCGCCGGCATCGCCGTCTGCGTTCCTCC
ATTGGCCCGTGTAGCTTTAGGGTGTGGTGACTCCTTTGACGGCTCCTCCT
TGTGAATATCTATTGCAGAAACATGACGGCAGCATCTGGGCCAGGTCAGA
GCGCAAAACTGGCCACTGGAGAGCAAGTTTGAAGGGCCGTTCCCACTGCA
AAATGCGAACATAGGGATGTTTCCTTCCAAGTAGAAGGTGAAACCAAACG
AAGCGCTGTGCTAGTCGAATCGGTTTCTAGTGTTGGATATAATGGTGTAG
GAGCGCAACTGCTCTTGGTTGTACCCAAGCCGGTCGATCGTTTCCGACGA
CCGCCAGCTGTTGTTTTTTCCCGAAGCCTGTGCTGCAACGAACGGCAGAA
ATTACTGCGCGTGTTGTTCGAATTTGTTGTGTTGGGACTTCTCAGCCAGC
AAATTCCCAAGCTCGGTAGAGCTTGGGTCGCTGCTGTCGGCCGTTAGTC back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_M_contig94:574420..577918+ >mRNA_E-siliculosus-1a_M_contig94.17453.1 ID=mRNA_E-siliculosus-1a_M_contig94.17453.1|Name=mRNA_E-siliculosus-1a_M_contig94.17453.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=642bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig94:574420..577918+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGGAGGAGGAAACGCCCAGAAGTCGGCCACCGCCCGCGCGCGGAACGA
GGCGAAGAAGGCCAAGGCCGGAAAGGGGTCTCAGCTTGCAGTCAACAAGG
CCGCACAGAGCATCGTCTGCCAGGTGTGTTTTATTACACAAAATGGTACT
TCTACATCTCACTACATCTCAGCCGTGATGTGTCCACGCGCGCACCAAAC
GAGGCGCGTGTGGGTGTTTCCTCTATTTTCATGGCAGATGAGATCCAGAT
GGCACGTCTGCCGTTTACAGGGAGAGCTTGCGTTACGTAACGTAGAAAGC
TTGGACATTTGTTCGCCATAGATGGGAGGAGGAAACGCCCAGAAGTCGGC
CACCGCCCGCGCGCGGAACGAGGCGAAGAAGGCCAAGGCCGGAAAGGGGT
CTCAGCTTGCAGTCAACAAGGCCGCACAGAGCATCGTCTGCCAGGTGTGT
TTTATTACACAAAATGGTACTTCTACATCTCACTACATCTCAGCCGTGAT
GTGTCCACGCGCGCACCAAACGAGGCGCGTGTGGGTGTTTCCTCTATTTT
CATGGCAGATGAGATCCAGATGGCACGTCTGCCGTTTACAGGGAGAGCTT
GCGTTACGTAACGTAGAAAGCTTGGACATTTGTTCGCCATAG back to top
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