mRNA_E-siliculosus-1a_M_contig94.17452.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig94.17452.1 vs. uniprot
Match: D7FU31_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FU31_ECTSI) HSP 1 Score: 414 bits (1065), Expect = 1.230e-142 Identity = 207/209 (99.04%), Postives = 207/209 (99.04%), Query Frame = 3 Query: 33 MVQYSKEIEGTKSAKARGSNLRVHFKHMREVAHLIKGMKLSKAKVYLQDVLEYKRAVPFTMFTGGVGRHAQGKLPIAKDYTGDPSSKTVPGNKHKHTFVSPGSKCRWPQKATRIVLDLVKNAESNAESKALDVDGLYIVHVQCNRAPKQRRRTYRAHGRINPYMSSPAHIELILSEKEVQVKKGDEPKKPTRKQVAKTRFVKAGGGVEV 659 MVQYSKEIEGTKSAKARGSNLRVHFKHMREVAHLIKGMKLSKAKVYLQDVLEYKRAVPFTMFTGGVGRHAQGKLPIAKDY GDPSSKTVPGNKHKHTFVSPGSKCRWPQKATRIVLDLVKNAESNAESKALDVD LYIVHVQCNRAPKQRRRTYRAHGRINPYMSSPAHIELILSEKEVQVKKGDEPKKPTRKQVAKTRFVKAGGGVEV Sbjct: 1 MVQYSKEIEGTKSAKARGSNLRVHFKHMREVAHLIKGMKLSKAKVYLQDVLEYKRAVPFTMFTGGVGRHAQGKLPIAKDYMGDPSSKTVPGNKHKHTFVSPGSKCRWPQKATRIVLDLVKNAESNAESKALDVDSLYIVHVQCNRAPKQRRRTYRAHGRINPYMSSPAHIELILSEKEVQVKKGDEPKKPTRKQVAKTRFVKAGGGVEV 209
BLAST of mRNA_E-siliculosus-1a_M_contig94.17452.1 vs. uniprot
Match: A0A6V1UCU8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1UCU8_HETAK) HSP 1 Score: 241 bits (614), Expect = 1.020e-74 Identity = 129/211 (61.14%), Postives = 155/211 (73.46%), Query Frame = 3 Query: 33 MVQYSKEIEGTKSAKARGSNLRVHFKHMREVAHLIKGMKLSKAKVYLQDVLEYKRAVPFTMFTGGVGRHAQGKLPIAKDYTGDPSSKTVPGNKHKHTFVSPGSKCRWPQKATRIVLDLVKNAESNAESKALDVDGLYIVHVQCNRAPKQRRRTYRAHGRINPYMSSPAHIELILSEKEVQVKKGDEPK----KPTRKQVAKTRFVKAGGGV 653 MV YS + E KS+KA+GS+LRVHFKHMREVAH IKGMKL+KAK +L+DVL++K+AV FT FTGG+G HAQGKL A PG+KCRWPQKAT+IVLDL+KNAE+NAE K LD++ L + H+Q NRAPKQRRRTYRAHGRINPYMSSPAHIEL+L+E+ V KG+E + K +RKQ A+ R V GGGV Sbjct: 1 MVNYSIKDEPEKSSKAKGSHLRVHFKHMREVAHNIKGMKLAKAKAFLEDVLQFKQAVTFTKFTGGIGHHAQGKLRKA-----------------------PGNKCRWPQKATKIVLDLLKNAEANAEVKGLDIESLVVTHIQTNRAPKQRRRTYRAHGRINPYMSSPAHIELLLAEEGSNVAKGEEEEGKQLKLSRKQAARRR-VTVGGGV 187
BLAST of mRNA_E-siliculosus-1a_M_contig94.17452.1 vs. uniprot
Match: W7TUF4_9STRA (60s ribosomal protein l17-2 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TUF4_9STRA) HSP 1 Score: 239 bits (610), Expect = 3.230e-74 Identity = 127/207 (61.35%), Postives = 149/207 (71.98%), Query Frame = 3 Query: 33 MVQYSKEIEG-TKSAKARGSNLRVHFKHMREVAHLIKGMKLSKAKVYLQDVLEYKRAVPFTMFTGGVGRHAQGKLPIAKDYTGDPSSKTVPGNKHKHTFVSPGSKCRWPQKATRIVLDLVKNAESNAESKALDVDGLYIVHVQCNRAPKQRRRTYRAHGRINPYMSSPAHIELILSEKEVQVKKGDEPKKPTRKQVAKTRFVKAGGG 650 MV+YS+EI+ K+AKARGS+LRVHFKH+REV+H I G ++ KAK +L+DVL+YKRAVPFT F GG+GRHAQGKL PGS+C WPQKAT+IVLD++ NAESNAE K +D D LYIVH Q NRAPKQRRRTYRAHGRINPYMSSPAH+E+IL+EK V VKK K TRKQ A+ R GGG Sbjct: 1 MVRYSREIDDPNKAAKARGSHLRVHFKHVREVSHTITGWQVGKAKQFLEDVLQYKRAVPFTRFKGGIGRHAQGKL-----------------------LSVPGSQCAWPQKATKIVLDMLTNAESNAEVKGMDTDNLYIVHAQTNRAPKQRRRTYRAHGRINPYMSSPAHLEIILTEKPVPVKKEPGAPKLTRKQAARVRV---GGG 181
BLAST of mRNA_E-siliculosus-1a_M_contig94.17452.1 vs. uniprot
Match: A0A5D6XKD7_9STRA (Uncharacterized protein n=25 Tax=Oomycota TaxID=4762 RepID=A0A5D6XKD7_9STRA) HSP 1 Score: 227 bits (578), Expect = 2.590e-69 Identity = 126/210 (60.00%), Postives = 148/210 (70.48%), Query Frame = 3 Query: 33 MVQYSKEIEGT-KSAKARGSNLRVHFKHMREVAHLIKGMKLSKAKVYLQDVLEYKRAVPFTMFTGGVGRHAQGKLPIAKDYTGDPSSKTVPGNKHKHTFVSPGSKCRWPQKATRIVLDLVKNAESNAESKALDVDGLYIVHVQCNRAPKQRRRTYRAHGRINPYMSSPAHIELILSEKEVQVKKGDEPK--KPTRKQVAKTRFVKAGGGV 653 M YS+E E ++AKARGS+LRVHFKH REV+H IKGM LSKAK +L VL+YK+AVPFT FTGG GRHAQGKL A PG KC+WPQKAT+I+LDLVKNAE+NAE K LD D LY+ H Q N A KQRRRTYRAHGRI PYM++PAHIELIL+EK V+K D+ K K +RK+ A+ R K+GGGV Sbjct: 1 MPSYSQEPEDAQRAAKARGSHLRVHFKHCREVSHAIKGMPLSKAKSFLSAVLDYKQAVPFTKFTGGCGRHAQGKLRNA-----------------------PGDKCKWPQKATKIILDLVKNAEANAEVKGLDTDKLYVSHAQANAAIKQRRRTYRAHGRIGPYMANPAHIELILTEKRDNVQKSDDKKEVKVSRKRQAQLRL-KSGGGV 186
BLAST of mRNA_E-siliculosus-1a_M_contig94.17452.1 vs. uniprot
Match: A0A485L8A8_9STRA (Aste57867_17649 protein n=4 Tax=Aphanomyces TaxID=100860 RepID=A0A485L8A8_9STRA) HSP 1 Score: 226 bits (577), Expect = 3.650e-69 Identity = 127/210 (60.48%), Postives = 146/210 (69.52%), Query Frame = 3 Query: 33 MVQYSKEIEG-TKSAKARGSNLRVHFKHMREVAHLIKGMKLSKAKVYLQDVLEYKRAVPFTMFTGGVGRHAQGKLPIAKDYTGDPSSKTVPGNKHKHTFVSPGSKCRWPQKATRIVLDLVKNAESNAESKALDVDGLYIVHVQCNRAPKQRRRTYRAHGRINPYMSSPAHIELILSEKEVQVKKGDEPK--KPTRKQVAKTRFVKAGGGV 653 M YS+E E T+SAKARG +LRVH+KH REV H IKG L+KAK +L DVLE K AVPFT +TGG GRHAQGKL +PG KCRWPQKATRI+LDLVKNAE+NAE K LDV+ LYI H Q N A KQRRRTYRAHGRI PYM++PAHIELIL+EK+ V K +EPK K +RK+ A R K+GGGV Sbjct: 1 MPSYSQEPEDQTRSAKARGRHLRVHYKHCREVCHTIKGYSLAKAKKFLGDVLEMKAAVPFTKYTGGPGRHAQGKL-----------------------LNAPGDKCRWPQKATRIILDLVKNAEANAELKGLDVEKLYIAHTQANMAIKQRRRTYRAHGRIGPYMANPAHIELILTEKKENVAKAEEPKAAKVSRKRQAVLRL-KSGGGV 186
BLAST of mRNA_E-siliculosus-1a_M_contig94.17452.1 vs. uniprot
Match: A0A7S1TQM1_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TQM1_9STRA) HSP 1 Score: 225 bits (573), Expect = 1.410e-68 Identity = 124/211 (58.77%), Postives = 147/211 (69.67%), Query Frame = 3 Query: 33 MVQYSKEIE-GTKSAKARGSNLRVHFKHMREVAHLIKGMKLSKAKVYLQDVLEYKRAVPFTMFTGGVGRHAQGKLPIAKDYTGDPSSKTVPGNKHKHTFVSPGSKCRWPQKATRIVLDLVKNAESNAESKALDVDGLYIVHVQCNRAPKQRRRTYRAHGRINPYMSSPAHIELILSEKEVQVKKGDE--PKKPTRKQVAKTRFVKAGGGVE 656 MV+YS + + KSAKARGS+LRVHFKH REV I+GMKLSKAK +L+DVLEYK+ VPFT FTGGVGRHAQ K +PGSK RWPQKA++IVLDL+ NAE+NAE K LD D LY+ H QCNRAP RRRTYRAHGRIN YMS PAH+E+IL+E++ V + DE P K +RK+ A+ R K GGGVE Sbjct: 1 MVKYSFDADLPVKSAKARGSHLRVHFKHCREVTTTIRGMKLSKAKAFLEDVLEYKQIVPFTKFTGGVGRHAQAK-----------------------NMKAPGSKGRWPQKASKIVLDLLTNAEANAEVKGLDTDALYVTHTQCNRAPPGRRRTYRAHGRINAYMSQPAHVEIILTEQDDAVARADEEKPLKLSRKRKAQLRL-KQGGGVE 187
BLAST of mRNA_E-siliculosus-1a_M_contig94.17452.1 vs. uniprot
Match: A0A067CFI1_SAPPC (50S ribosomal protein L22 n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CFI1_SAPPC) HSP 1 Score: 224 bits (572), Expect = 1.980e-68 Identity = 125/210 (59.52%), Postives = 147/210 (70.00%), Query Frame = 3 Query: 33 MVQYSKEIEG-TKSAKARGSNLRVHFKHMREVAHLIKGMKLSKAKVYLQDVLEYKRAVPFTMFTGGVGRHAQGKLPIAKDYTGDPSSKTVPGNKHKHTFVSPGSKCRWPQKATRIVLDLVKNAESNAESKALDVDGLYIVHVQCNRAPKQRRRTYRAHGRINPYMSSPAHIELILSEKEVQVKKGDE--PKKPTRKQVAKTRFVKAGGGV 653 M YS+E E ++SAK+RGS+LRVHFKH REV H IKG+ + KAK +L+ VLE K AVPFT FTGGVGRHAQGK T +PG KCRWPQKAT+I+LDLVKNAE+NAE K LD D LYI H Q N A KQRRRTYRAHGRI PYMS+PAHIELIL+EK+ V K ++ P K +RK+ A+ R K+GGGV Sbjct: 1 MPSYSQEPEDQSRSAKSRGSHLRVHFKHCREVCHTIKGLPVGKAKKFLEAVLEKKAAVPFTKFTGGVGRHAQGK-----------------------TLNAPGDKCRWPQKATKIILDLVKNAEANAELKGLDTDKLYIAHTQANAAIKQRRRTYRAHGRIGPYMSNPAHIELILTEKKENVAKAEDAAPAKISRKRNAQLRL-KSGGGV 186
BLAST of mRNA_E-siliculosus-1a_M_contig94.17452.1 vs. uniprot
Match: A0A7S2WRP5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WRP5_9STRA) HSP 1 Score: 223 bits (569), Expect = 8.560e-68 Identity = 123/210 (58.57%), Postives = 150/210 (71.43%), Query Frame = 3 Query: 27 TTMVQYSKEI-EGTKSAKARGSNLRVHFKHMREVAHLIKGMKLSKAKVYLQDVLEYKRAVPFTMFTGGVGRHAQGKLPIAKDYTGDPSSKTVPGNKHKHTFVSPGSKCRWPQKATRIVLDLVKNAESNAESKALDVDGLYIVHVQCNRAPKQRRRTYRAHGRINPYMSSPAHIELILSEKEVQVKKG-DEPKKPTRKQVAKTRFVKAGGG 650 +TMV+YS ++ E T +KA+ S+LRVHFKH RE+ H IKGM+L+KA +L+DVL+YK+AVPFT FTGG+GRHAQ K +PGSK RWPQKAT++VLDLVKNAE+NAE+K LD D L++ H Q NRA KQRRRTYRAHGRINPYMSSPAHIELIL+ E V K D P+K TR++ A+ R VK GGG Sbjct: 14 STMVKYSMDMDEATDYSKAKASSLRVHFKHTREIMHTIKGMQLAKALKFLEDVLQYKQAVPFTKFTGGIGRHAQLKQ-----------------------MKAPGSKGRWPQKATKVVLDLVKNAEANAETKGLDTDKLFVKHAQANRAQKQRRRTYRAHGRINPYMSSPAHIELILASIEDPVAKAEDAPQKLTRRRQAQLR-VKVGGG 199
BLAST of mRNA_E-siliculosus-1a_M_contig94.17452.1 vs. uniprot
Match: A0A7S2FZJ5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FZJ5_9STRA) HSP 1 Score: 223 bits (568), Expect = 1.910e-67 Identity = 123/211 (58.29%), Postives = 148/211 (70.14%), Query Frame = 3 Query: 33 MVQYSKEI--EGTKSAKARGSNLRVHFKHMREVAHLIKGMKLSKAKVYLQDVLEYKRAVPFTMFTGGVGRHAQGKLPIAKDYTGDPSSKTVPGNKHKHTFVSPGSKCRWPQKATRIVLDLVKNAESNAESKALDVDGLYIVHVQCNRAPKQRRRTYRAHGRINPYMSSPAHIELILSEKEVQVKKGDEPKKP---TRKQVAKTRFVKAGGG 650 MV+YS + + +KARGS+LRVHFKH RE+ H IKGM LS+AK +L+DVL+ K+AVPFT FTGG+GRHAQ K F +PGSK RWPQKA++I+LDL+KNAE+NAE K LDVD L +VH QCNRA +QRRRTYRAHGRINPYMS PAHIEL+L + VKK DE KK TRKQ A+ R +K+GGG Sbjct: 28 MVKYSYDQLDDSVDCSKARGSHLRVHFKHCREITHTIKGMSLSRAKQFLEDVLQMKQAVPFTKFTGGIGRHAQLKQ-----------------------FKAPGSKGRWPQKASKIILDLLKNAEANAEFKGLDVDDLEVVHAQCNRAQQQRRRTYRAHGRINPYMSHPAHIELVLENPKNPVKKEDEDKKVPRLTRKQQAQLR-IKSGGG 214
BLAST of mRNA_E-siliculosus-1a_M_contig94.17452.1 vs. uniprot
Match: A0A836C7U9_9STRA (Ribosomal protein L22/L17 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7U9_9STRA) HSP 1 Score: 221 bits (564), Expect = 3.240e-67 Identity = 123/211 (58.29%), Postives = 144/211 (68.25%), Query Frame = 3 Query: 33 MVQYSKEIEG-TKSAKARGSNLRVHFKHMREVAHLIKGMKLSKAKVYLQDVLEYKRAVPFTMFTGGVGRHAQGKLPIAKDYTGDPSSKTVPGNKHKHTFVSPGSKCRWPQKATRIVLDLVKNAESNAESKALDVDGLYIVHVQCNRAPKQRRRTYRAHGRINPYMSSPAHIELILSEKEVQVKKGDEPKKPTRKQVAKTRF--VKAGGGVE 656 M +Y+KE E K++KARG+ LR HFKH+REVAH I+G +A +L+DVL++KRAV FT FTGGVGRHAQGKL A PG K RWPQKAT++VL LVKNAESNA +K LDVD L I H+ N AP+QRRRTYRAHGRIN YMS+P H ELIL+EK VQV K E K +RKQVA RF VK GGG+E Sbjct: 1 MTRYAKEAENPAKASKARGAYLRCHFKHLREVAHNIRGKSCVEAVRFLEDVLKFKRAVTFTKFTGGVGRHAQGKLVNA-----------------------PGDKVRWPQKATKVVLGLVKNAESNAVTKGLDVDKLVITHIMANHAPQQRRRTYRAHGRINAYMSTPGHFELILAEKAVQVPKAAEAPKLSRKQVAAARFKSVKVGGGLE 188 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig94.17452.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig94.17452.1 >prot_E-siliculosus-1a_M_contig94.17452.1 ID=prot_E-siliculosus-1a_M_contig94.17452.1|Name=mRNA_E-siliculosus-1a_M_contig94.17452.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=210bp MVQYSKEIEGTKSAKARGSNLRVHFKHMREVAHLIKGMKLSKAKVYLQDVback to top mRNA from alignment at E-siliculosus-1a_M_contig94:568391..574258- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig94.17452.1 ID=mRNA_E-siliculosus-1a_M_contig94.17452.1|Name=mRNA_E-siliculosus-1a_M_contig94.17452.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=5868bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig94:568391..574258- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig94:568391..574258- >mRNA_E-siliculosus-1a_M_contig94.17452.1 ID=mRNA_E-siliculosus-1a_M_contig94.17452.1|Name=mRNA_E-siliculosus-1a_M_contig94.17452.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1260bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig94:568391..574258- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |