mRNA_E-siliculosus-1a_M_contig94.17450.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig94.17450.1 vs. uniprot
Match: D8LN18_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN18_ECTSI) HSP 1 Score: 1344 bits (3479), Expect = 0.000e+0 Identity = 1013/1419 (71.39%), Postives = 1029/1419 (72.52%), Query Frame = 1 Query: 169 MASAREFSSRXXXXXXXXXXXXXXXXKPSRSTPRRXXXXXXXXXXXXXSDDEAQEETHATIGRDAAATMRQADAGIGARRVLEFARGDAALRESAAALSGGTAESWMSXXXXXXXEEGLGLLRQQLSAVQRIRIEHERKDATIAALRLEVSTLSRQREEMLALXXXRNGELLRLVRMEETVRRLEEGERDTXXXXXXXXXXXXXXXXXXXXQCRAERDRAEELAALEPALAKAKXXXXXXXXXXTRDEAGRAEAEFRAGTITERLNAEMERERAKSRGLEDKLRMLEEELAGANRLIPEVKSLQEANETLRAELAVASERRSEVELELAQLKVYRPLVERADSIDRRRIAAEEGLRAATAELSRERDALAAAKDGAAELRLALERRGLRLAEAEAEASKALSLERDLLSATGRLEAAQAARADAESSRRENASALAEXXXXXXXXXXXXXXXXXXXXXXXRIXXXXXXXXXGCGRSGDTRSAAVXXXXGLEGGVRQRGEGPRAEVDGGDGDGDRKTGRKDXXXXXXXXXXRVEAGRCSDGVARAARAVRALAEAGMAAAADRDHATKELVDAQGDLRSALDRLEASQREGTGVRRALEDACAARSALLPRLRDTQVSRAAAEAAADRASAELADIRGFLVELSALLARSNAETTSDGDASPGWSTNGSSTIPPSASDAPGAGAG--GCAKVVAAISAGVKGLLAERTVAASALRELDNRFSQGKREAEEASADARDRDTAHREQLVELRSWCESEVEAQRRAKKAAQTAADCALRDLSTARRLISGFEKEKSRISGHAAALNARLSTITEEASAAKTGLRLLARACWPLLERCRLLAEHKRLLAKWHGSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRPGAGGRGDGVRGDXXXXXXXXXXXXXXGSQQPTTVLIIDGLRSLVEALSQDGDEEEGQAERGXXXXXXXXXSFAPASRAHGIPRRPGSSEGGDGCGEVRDAAGNVHYHQHHDKRQQRRPLVSLRATCIAAVAAQRLVRLAACRASQREAXXXXXXXXXXXXXXXXXXXXXXXXAGGRPGPSRDGDAGIGEDIIPLGPRGSGGXXXXXXGVPMLLDTQVVSPASMSLASMSLLADHSKDGTGDPSQAGGVACRSDGGXXXXXXXXXXD-GERCMGLLGALVVVDAGNVSSVGTGXXXXXXXAAATGEWLGRGGGGTPVVTGAARDAAGRTSLLEVLAGGQVGHWRRVEKRGLVPWAGSGGGSGSDPRLLGGASRVVASRCARHHGQDVWKAWQERAAAEEACSLLGATRRGTAALARLAGEAERRLLESEAGRLQAKAEVEALEASKQALRVALEKKSELVSFLEERVQMMEGEASGTVPAAALAGTEKALTESLAEVETLRVRSASLYAELAEASALRKREARQARKGAQVANQEKAI 4416 M S RE S XXXXXXXXXXXXXXXXK SRSTPRRXXXX XX X SDDEAQE T TIGRDAAA MRQADAGIG RRVLEFARGDAALRESAAALSGGTAESWMS EEGLGLLRQQLSAVQRIRIEHERKDATIAALRLE S + +R R EE R+ QCRAERDRAEELAALEPALAKA+ XXXXX RDEAGRAEAEFRAGTITERLNAEMERERAKSRGLEDKLR+LEEELAGANRLIPEVKS+Q ANE LRAEL VASERRSEVELELAQLKVYRPLVERAD IDRRR+AAEEGLRAATAELSRERDALAAAKDGAAELRLALERR EXXXXXXXXXXXXXXXXXXXXXXX L DIRGFLVELSALLARSNAE SDG+ASPGWSTNGSSTIPPSASDAPGAGAG GC KVVAAISAGVKGLLAERTVAASALRELDNRFSQGKREAEEASAD RDRDTAHREQLVELRSWCESEVEAQRRAK+AAQTAADCALRDLSTARRLIS FEKEK+RISG+A ALNARLST+TEEASAAK GLRLLARACWPLLERCRLLAEHKRLLAKWH SSXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXX GSQQPT VLIIDGLRSLV+ALSQDGDEEEGQA RG APASRAHG PRRPGSSEGG GCGEV D AGNVH HQHHDKRQQRRPLVSLRATCIAAVA QRLVRLAACRAS+REAXXXXXXXXXXXXXXXXXXXXX AGGRP PSR GDAGIGE IIPLGPRGSGG GVPMLLDTQVVSP SMSLA MSLL DHSKDGTGDPSQAGGVACR DGGXXXXXXXXXX GERCMGLLGALVVVDAGN+SS AAATGEW GRG GT V TGAARDAAGRTSLLEVLAGGQVGHWRRVEKRGLVPWAGSGGGSGSDPRLLGGASRVVASRCARHHGQDVWKAWQERAAAEEACSLLGATRRGTAALARLAGEAERRLLESEAGRLQAKAEVEALEASKQALRVALEKKSELVSFLEERVQMMEGEASGTVPAAALAGTEKALTESLAEVETLRVRSASLYAELAEASA RKREARQARKGAQVANQEK + Sbjct: 1 MESVRESSXXXXXXXXXXXXXXXXXXKTSRSTPRRXXXXPRXXTXTPTSDDEAQE-TRPTIGRDAAAYMRQADAGIGTRRVLEFARGDAALRESAAALSGGTAESWMSGSGGGGDEEGLGLLRQQLSAVQRIRIEHERKDATIAALRLEASADTARR----------------CTREEEAWRK---------------------QLRDMQEQCRAERDRAEELAALEPALAKARSEAVAXXXXXARDEAGRAEAEFRAGTITERLNAEMERERAKSRGLEDKLRVLEEELAGANRLIPEVKSIQGANEALRAELVVASERRSEVELELAQLKVYRPLVERADFIDRRRVAAEEGLRAATAELSRERDALAAAKDGAAELRLALERR--------------------------------------------------EXXXXXXXXXXXXXXXXXXXXXXXXX-------------------------------------------------------------------------------------------------------------------------------------------------------------------------LGDIRGFLVELSALLARSNAEAASDGEASPGWSTNGSSTIPPSASDAPGAGAGAGGCVKVVAAISAGVKGLLAERTVAASALRELDNRFSQGKREAEEASADTRDRDTAHREQLVELRSWCESEVEAQRRAKRAAQTAADCALRDLSTARRLISDFEKEKARISGNAVALNARLSTVTEEASAAKNGLRLLARACWPLLERCRLLAEHKRLLAKWHDSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------XXXXXXXXXXXXXXXXXPGSQQPTMVLIIDGLRSLVDALSQDGDEEEGQAGRGLGSENGGGDPPAPASRAHGTPRRPGSSEGGGGCGEVGDTAGNVHNHQHHDKRQQRRPLVSLRATCIAAVAVQRLVRLAACRASRREAXXXXXXXXXXXXXXXXXXXXXTA-AGGRPSPSRHGDAGIGEAIIPLGPRGSGGGSGGG-GVPMLLDTQVVSPGSMSLALMSLLGDHSKDGTGDPSQAGGVACRGDGGXXXXXXXXXXXXGERCMGLLGALVVVDAGNISS-----------AAATGEWFGRGFEGTAVETGAARDAAGRTSLLEVLAGGQVGHWRRVEKRGLVPWAGSGGGSGSDPRLLGGASRVVASRCARHHGQDVWKAWQERAAAEEACSLLGATRRGTAALARLAGEAERRLLESEAGRLQAKAEVEALEASKQALRVALEKKSELVSFLEERVQMMEGEASGTVPAAALAGTEKALTESLAEVETLRVRSASLYAELAEASAQRKREARQARKGAQVANQEKVV 1143
BLAST of mRNA_E-siliculosus-1a_M_contig94.17450.1 vs. uniprot
Match: A0A6H5KPE9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPE9_9PHAE) HSP 1 Score: 631 bits (1627), Expect = 1.480e-202 Identity = 469/565 (83.01%), Postives = 478/565 (84.60%), Query Frame = 1 Query: 2425 EVEAQRRAKKAAQTAADCALRDLSTARRLISGFEKEKSRISGHAAALNARLSTITEEASAAKTGLRLLARACWPLLERCRLLAEHKRLLAKWHGSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRPGAGGRGDGVRGDXXXXXXXXXXXXXXGSQQPTTVLIIDGLRSLVEALSQDGDEEEGQAERGXXXXXXXXXSFAPASRAHGIPRRPGSSEGGDGCGEVRDAAGNVHYHQHHDKRQQRRPLVSLRATCIAAVAAQRLVRLAACRASQREAXXXXXXXXXXXXXXXXXXXXXXXXAGGRPGPSRDGDAGIGEDIIPLGPRGSGGXXXXXXGVPMLLDTQVVSPASMSLASMSLLADHSKDGTGDPSQAGGVACRSDGGXXXXXXXXXXDGERCMGLLGALVVVDAGNVSSVGTGXXXXXXXAAATGEWLGRGGGGTPVVTGAARDAAGRTSLLEVLAGGQVGHWRRVEKRGLVPWAGSGGGSGSDPRLLGGASRVVASRCARHHGQDVWKAWQERAAAEEACSLLGATRRGTAALARLAGEAERRLLESEAGRLQAKAEV 4119 +VEAQRRAKKAAQTAADCALRDLSTARRLISGFE+EKSRISG+AAALNARLSTITEEASAAK GLRLL RAC PLLERCRLLAEHKRLLAKWHGSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXX TVL+IDGLRSLV+AL QDGDEEEGQA G S APASR HG PRRPGS EGG GCGEV D AGNVHYHQ+HDKRQQRRPLVSLRATCIAAVA QRLV XXXXXXXXXXXXXXXXXXXXXX AGGRP PS GDAGI EDIIPLGPRGSGG GVPMLLDTQVVSPASMSLA MSLLAD SKDGTGDPSQAG VACRSDGGXXXXXXXX DGERCMGLLGALVVVDAGNVSS XXXXXXX A GEW RG GT VVTGAARDAAGRTSLL+VLAGGQVGHWRRVEKRGLVPWAGSGGGSGSDPRLLGGASRVVASRCARHHG +VWKA QERAAAEEACSLLGATRRGTAALARLAGEAERRLLESEAGRLQAKAE+ Sbjct: 20 QVEAQRRAKKAAQTAADCALRDLSTARRLISGFEEEKSRISGNAAALNARLSTITEEASAAKAGLRLLVRACLPLLERCRLLAEHKRLLAKWHGSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------XXXXXXXXXXXXXXXXXXXXXXXXTVLMIDGLRSLVDALRQDGDEEEGQAGGGLGSNNGRGGSPAPASRTHGTPRRPGSCEGGGGCGEVGDMAGNVHYHQNHDKRQQRRPLVSLRATCIAAVAVQRLVXXX--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAAGGRPSPSPHGDAGIREDIIPLGPRGSGGGSSGG-GVPMLLDTQVVSPASMSLALMSLLADLSKDGTGDPSQAGCVACRSDGGXXXXXXXX--DGERCMGLLGALVVVDAGNVSSXXXXXXXXXXXXA--GEWFTRGDKGTAVVTGAARDAAGRTSLLQVLAGGQVGHWRRVEKRGLVPWAGSGGGSGSDPRLLGGASRVVASRCARHHGPEVWKARQERAAAEEACSLLGATRRGTAALARLAGEAERRLLESEAGRLQAKAEI 571
BLAST of mRNA_E-siliculosus-1a_M_contig94.17450.1 vs. uniprot
Match: A0A6H5KR29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR29_9PHAE) HSP 1 Score: 258 bits (658), Expect = 1.480e-75 Identity = 154/162 (95.06%), Postives = 156/162 (96.30%), Query Frame = 1 Query: 4147 LRVALEKKSELVSFLEERVQMMEGEASGTVPAAALAGTEKALTESLAEVETLRVRSASLYAELAEASALRKREARQARKGAQVANQEKAIRAQLQDELLSLRSYVLRSEQTVQELQEQARRQAREQGRYTDSSGGDSSGRNNDLHQPFLAVADRAAAAEGLF 4632 +RVALEKKSELVSFLEERVQMMEGEASGTVPAAALAGTE+ALTESLAEVETLRVRSASLYAELAEASA RKREARQARKGAQVANQEKAIRAQLQDELLSLRSYVLRSEQTVQELQEQARRQAREQGRYTDSSGGDSSGRNN QPFLAVAD AAA EGLF Sbjct: 1 MRVALEKKSELVSFLEERVQMMEGEASGTVPAAALAGTERALTESLAEVETLRVRSASLYAELAEASAQRKREARQARKGAQVANQEKAIRAQLQDELLSLRSYVLRSEQTVQELQEQARRQAREQGRYTDSSGGDSSGRNNHRDQPFLAVADHAAA-EGLF 161
BLAST of mRNA_E-siliculosus-1a_M_contig94.17450.1 vs. uniprot
Match: A0A6H5L4I7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4I7_9PHAE) HSP 1 Score: 162 bits (409), Expect = 1.620e-41 Identity = 156/176 (88.64%), Postives = 160/176 (90.91%), Query Frame = 1 Query: 1357 ASKALSLERDLLSATGRLEAAQAARADAESSRRENASALAEXXXXXXXXXXXXXXXXXXXXXXXRIXXXXXXXXX--GCGRSGDTRSAAVXXXXGLEGGVRQRGEGPRAEVDGGDGDGDRKTGRKDXXXXXXXXXX-RVEAGRCSDGVARAARAVRALAEAGMAAAADRDHATKEL 1875 ASKALSLERDL+SATGRLEAA+AARADAE SRRENASALAEXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXX GCGR GD XXXX LEGGVRQRGEGPRAEVDGGDGDG+RKT RKD XXXXXXXXX RVEAGRCSDGVARAARAVRALAEAGMAAAADRDHATK+L Sbjct: 7 ASKALSLERDLISATGRLEAAEAARADAEGSRRENASALAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGRIGDXXXXXXXXXXXLEGGVRQRGEGPRAEVDGGDGDGERKTRRKDVXXXXXXXXXXRVEAGRCSDGVARAARAVRALAEAGMAAAADRDHATKKL 182 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig94.17450.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 4 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig94.17450.1 >prot_E-siliculosus-1a_M_contig94.17450.1 ID=prot_E-siliculosus-1a_M_contig94.17450.1|Name=mRNA_E-siliculosus-1a_M_contig94.17450.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=1489bp MASAREFSSRRRRQHPPITTTAATTSKPSRSTPRRRRRQPRPPTPTPTSDback to top mRNA from alignment at E-siliculosus-1a_M_contig94:542186..559339+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig94.17450.1 ID=mRNA_E-siliculosus-1a_M_contig94.17450.1|Name=mRNA_E-siliculosus-1a_M_contig94.17450.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=17154bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig94:542186..559339+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig94:542186..559339+ >mRNA_E-siliculosus-1a_M_contig94.17450.1 ID=mRNA_E-siliculosus-1a_M_contig94.17450.1|Name=mRNA_E-siliculosus-1a_M_contig94.17450.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=8934bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig94:542186..559339+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |