mRNA_E-siliculosus-1a_M_contig94.17445.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig94.17445.1 vs. uniprot
Match: D8LN13_ECTSI (Regulator of chromosome condensation-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN13_ECTSI) HSP 1 Score: 1062 bits (2746), Expect = 0.000e+0 Identity = 554/629 (88.08%), Postives = 574/629 (91.26%), Query Frame = 1 Query: 70 MKRGQEILVGVGDSSFCQVPCPWASWSRQPVDENSKSSSS-NDDVRRVQTKISQIACGATTCLA-VXXXXXXXXXSAIDNARPAYLLEWGTGLYGERLSTETSVPQQGDERHHASFLNHPAQVALSSLPLGLRSSPPAIRYIACGAHFVVASLENGGCISWGGGREGRRALGRGSCGTCGQCRNGSTPAAPPLSYPSSSRPDWVAEPLGLGGSKVADLAAGDDHVIAVGTDGSAWAWGRGDCGQLGYGSPPDGADCDGGGSACVPMAVQLPSPASGTPLDEVGLASTSSGAAGAATGVKSGHGLQDPQKRPGALVIRAACGRDHSAIITNDGRIWTFGSGLHGQLGLGTVGETSSIPTVVDALIGVGTMRPDGSFTGMEAVACGAWHTAALSTTGDVYTWGWARFGALGPSPFVVGSPRRSQRDTTASSTGDSATINDSGASPASGKRKLETASSTPAEEEEGEVRPYPGLVDGMDDILADDGDELVSVSCGARYTLATSREGRVFVWGQVAPPLQRYGGRGGGKQKGGDGSSVRGTGTGDGK----GPQLGPFSVPREMNPAELLQDAAPPNSQMDEGGEGRCCCELGSAKGVRAGADDKGGSRWKVSAVGCGPWFVVFGLQEEERQG 1938
MKRGQEILVGVGDSSFCQ+PCPWASWSRQ D NSKS S N+DVRRVQTKISQIACGATTCLA V XXXXXXXXSAID+ARP++LLEWGTGLYGERLSTETSVPQQGDER+HASFLNHPAQVALSSLPLGLRSSPP IRYIACGAHFVVASLENGGCISWGGGREGRRALGRGSCGTCGQCRNGSTPAAPPLSYPSSS+PDWVAEPLGLGGSKVADLAAGDDHVIAVGTDGSAWAWGRGDCGQLGYGSPPDGADCDGGGSACVPMAVQLPSPASGTPLDE GLASTSSGAAGAATGVKSGHG+ GALVIRAACGRDHSAIITNDGRIWTFGSGLHGQLGLGTVGETSSIPTVVDALIGVGTMRPDGSFTGMEAVACGAWHTAALSTTGDVYTWGWARFGALGPSPFV GSP R Q+DTTAS+TGDSATINDSGASPASGKRKL++A STPAEEE GEVRPYPGLVD MDDILADD D+LVSVSCGARYT+ATS +GR FVWGQVAPPLQ YGGRGG G +LGPFS PREM PAELLQDAAPPNSQMDEGGEGRCCCE+GSAKG+RAGADD+G SRW+VSAVGCGPWFVVFGLQEEERQG
Sbjct: 1 MKRGQEILVGVGDSSFCQIPCPWASWSRQTADANSKSHPSRNEDVRRVQTKISQIACGATTCLAAVNXXXXXXXXSAIDHARPSFLLEWGTGLYGERLSTETSVPQQGDERNHASFLNHPAQVALSSLPLGLRSSPPVIRYIACGAHFVVASLENGGCISWGGGREGRRALGRGSCGTCGQCRNGSTPAAPPLSYPSSSKPDWVAEPLGLGGSKVADLAAGDDHVIAVGTDGSAWAWGRGDCGQLGYGSPPDGADCDGGGSACVPMAVQLPSPASGTPLDEGGLASTSSGAAGAATGVKSGHGVH------GALVIRAACGRDHSAIITNDGRIWTFGSGLHGQLGLGTVGETSSIPTVVDALIGVGTMRPDGSFTGMEAVACGAWHTAALSTTGDVYTWGWARFGALGPSPFVTGSPLRPQQDTTASATGDSATINDSGASPASGKRKLKSARSTPAEEE-GEVRPYPGLVDEMDDILADDDDQLVSVSCGARYTVATSTKGRAFVWGQVAPPLQHYGGRGGXXXXXXXXXXXXXXXXXXXXXXXXGRRLGPFSAPREMKPAELLQDAAPPNSQMDEGGEGRCCCEVGSAKGLRAGADDEGDSRWRVSAVGCGPWFVVFGLQEEERQG 622
BLAST of mRNA_E-siliculosus-1a_M_contig94.17445.1 vs. uniprot
Match: A0A6H5KPF1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPF1_9PHAE) HSP 1 Score: 1056 bits (2730), Expect = 0.000e+0 Identity = 556/634 (87.70%), Postives = 568/634 (89.59%), Query Frame = 1 Query: 70 MKRGQEILVGVGDSSFCQVPCPWASWSRQPVDENSKS--SSSNDDVRRVQTKISQIACGATTCLAVXXXXXXXXXS------AIDNARPAYLLEWGTGLYGERLSTETSVPQQGDERHHASFLNHPAQVALSSLPLGLRSSPPAIRYIACGAHFVVASLENGGCISWGGGREGRRALGRGSCGTCGQCRNGSTPAAPPLSYPSSSRPDWVAEPLGLGGSKVADLAAGDDHVIAVGTDGSAWAWGRGDCGQLGYGSPPDGADCDGGGSACVPMAVQLPSPASGTPLDEVGLASTSSGAAGAATG----VKSGHGLQDPQKRPGALVIRAACGRDHSAIITNDGRIWTFGSGLHGQLGLGTVGETSSIPTVVDALIGVGTMRPDGSFTGMEAVACGAWHTAALSTTGDVYTWGWARFGALGPSPFVVGSPRRSQRDTTASSTGDSATINDSGASPASGKRKLETASSTPAEEEEGEVRPYPGLVDGMDDILADDGDELVSVSCGARYTLATSREGRVFVWGQVAPPLQRYGGRGGGKQKGGDGSSVRGTGTGDGKGPQLGPFSVPREMNPAELLQDAAPPNSQMDEGGEGRCCCELGSAKGVRAGADDKGGSRWKVSAVGCGPWFVVFGLQEEERQ 1935
MKRGQEILVGVGDSSFCQ+PCPWASWSRQ DE KS SSSNDDV RVQTKISQIACGATTCLA XXXXXXX AID A PAYLLEWGTGLYGERLSTETSVPQQGDER+ SFLNHPA VA SSLPLGLRSSPPAIRYIACGAHFVVASLENGGCISWGGGREGRRALGRGSCGTCGQC +GSTPAA PLSYPSSS PDWVAEPLGLGGSKVADLAAGDDHVIAVGTDG AWAWGRGDCGQLGYGSP DG D DGGGSACVPMAVQLPSPASGTPLDE GLASTSSGAAGA VKSGHGLQDP+KRPGALVIRAACGRDHSAIITNDGRIWTFGSGLHGQLGLGTVGETSSIPTVVDALIGVGTMRPDGSFTGME VACGAWHTAALSTTGDVYTWGWARFGALGPSP V G RR Q+DTTAS GDSATINDSGASPASGKRKLET SSTPA EE GEVRPYPGLVDGMDDILADD D+LVSVSCGARYTLATS +GR FVWGQVAPPLQ+YGGRGGG+QKGGDGSSVRG TGD KGP LGPFSVPREM PA+LLQDAAP NSQ DE EGRC CE+GS +GVRAGA DKG SRWKVS VGCGPWFVVFGLQEEERQ
Sbjct: 1 MKRGQEILVGVGDSSFCQIPCPWASWSRQTADEKGKSHGSSSNDDVCRVQTKISQIACGATTCLAAVNXXXXXXXXXXXXXXAIDPAPPAYLLEWGTGLYGERLSTETSVPQQGDERNQESFLNHPAPVAFSSLPLGLRSSPPAIRYIACGAHFVVASLENGGCISWGGGREGRRALGRGSCGTCGQCHDGSTPAARPLSYPSSSNPDWVAEPLGLGGSKVADLAAGDDHVIAVGTDGCAWAWGRGDCGQLGYGSP-DGVDYDGGGSACVPMAVQLPSPASGTPLDEGGLASTSSGAAGAXXXXXXXVKSGHGLQDPRKRPGALVIRAACGRDHSAIITNDGRIWTFGSGLHGQLGLGTVGETSSIPTVVDALIGVGTMRPDGSFTGMETVACGAWHTAALSTTGDVYTWGWARFGALGPSPLVAGFHRRPQQDTTASVIGDSATINDSGASPASGKRKLETTSSTPAAEE-GEVRPYPGLVDGMDDILADDDDQLVSVSCGARYTLATSSKGRAFVWGQVAPPLQQYGGRGGGEQKGGDGSSVRGIDTGDRKGPPLGPFSVPREMKPADLLQDAAPSNSQTDERREGRCYCEVGSPRGVRAGAVDKGDSRWKVSTVGCGPWFVVFGLQEEERQ 632
BLAST of mRNA_E-siliculosus-1a_M_contig94.17445.1 vs. uniprot
Match: A0A7S2WVU6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WVU6_9STRA) HSP 1 Score: 103 bits (256), Expect = 2.740e-21 Identity = 49/98 (50.00%), Postives = 66/98 (67.35%), Query Frame = 1 Query: 997 GALVIRAACGRDHSAIITNDGRIWTFGSGLHGQLGLGTVGETSSIPTVVDALIGVGTMRPDGSFTGMEAVACGAWHTAALSTTGDVYTWGWARFGALG 1290
GA A G HSA++ + GR++TFGSG QLG G + P +V+ L+GVG + P+G+ TG+ V+CG WHTAA++T GD+YTWGW RFG LG
Sbjct: 16 GAQAWSVAAGPVHSAVVDSKGRLYTFGSGGRYQLGHGQAVDEPE-PRLVETLLGVGRLLPNGTSTGIRQVSCGTWHTAAITTDGDLYTWGWGRFGQLG 112
BLAST of mRNA_E-siliculosus-1a_M_contig94.17445.1 vs. uniprot
Match: W4GMU7_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GMU7_9STRA) HSP 1 Score: 100 bits (250), Expect = 2.110e-19 Identity = 52/91 (57.14%), Postives = 65/91 (71.43%), Query Frame = 1 Query: 1018 ACGRDHSAIITNDGRIWTFGSGLHGQLGLGTVGETSSIPTVVDALIGVGTMRPDGSFTGMEAVACGAWHTAALSTTGDVYTWGWARFGALG 1290
A G HSA+I+ DG ++TFG GL+ QLG GT + PT V +L GVG ++ + FTG+ VACGAWHTAAL+TTGDVYTWGW + G LG
Sbjct: 165 AAGAHHSAVISCDGHLYTFGWGLYHQLGHGTTNNVFT-PTRVRSLEGVGQLQRN-HFTGLARVACGAWHTAALTTTGDVYTWGWGQHGQLG 253
BLAST of mRNA_E-siliculosus-1a_M_contig94.17445.1 vs. uniprot
Match: W4GLY5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GLY5_9STRA) HSP 1 Score: 99.4 bits (246), Expect = 2.440e-19 Identity = 55/103 (53.40%), Postives = 68/103 (66.02%), Query Frame = 1 Query: 1018 ACGRDHSAIITNDGRIWTFGSGLHGQLGLGTVGETSSIPTVVDALIGVGTMRPDGSFTGMEAVACGAWHTAALSTTGDVYTWGWARFGALGPSPFVVGSPRRS 1326
A G HSA+I+ DG ++TFG GL+ QLG GT + PT V +L GVG ++ + FTG+ VACGAWHTAAL+TTGDVYTWGW + G L F S RS
Sbjct: 165 AAGAHHSAVISCDGHLYTFGWGLYHQLGHGTTNNVFT-PTRVRSLEGVGQLQRN-HFTGLARVACGAWHTAALTTTGDVYTWGWGQHGQLVRDLFFPFSVLRS 265
BLAST of mRNA_E-siliculosus-1a_M_contig94.17445.1 vs. uniprot
Match: M4C452_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C452_HYAAE) HSP 1 Score: 97.8 bits (242), Expect = 2.900e-18 Identity = 65/196 (33.16%), Postives = 89/196 (45.41%), Query Frame = 1 Query: 703 KVADLAAGDDHVIAVGTDGSAWAWGRGDCGQLGYGSPPDGADCDGGGSACVPMAVQLPSPASGTPLDEVGLASTSSGAAGAATGVKSGHGLQDPQKRPGALVIRAACGRDHSAIITNDGRIWTFGSGLHGQLGLGTVGETSSIPTVVDALIGVGTMRPDGSFTGMEAVACGAWHTAALSTTGDVYTWGWARFGALG 1290
++ ++AAG H +A+ + G WAWG GQ+G GS + C P V LP GV+ H A G HSA+++ G ++TFG GL+ QLG G + +P VDAL G+ + + VACG WHTAAL+ +GD+YTWGW R G LG
Sbjct: 96 RITEVAAGGMHSLAIDSCGRVWAWGSNTYGQVGIGSKTE--------QLCAPRCVMLP------------------------LGVRVHH---------------IAAGWAHSALVSTIGEVFTFGWGLYNQLGHGCT-QDEPLPVAVDALHGLDS--------DVVQVACGNWHTAALTASGDMYTWGWGRDGQLG 235
BLAST of mRNA_E-siliculosus-1a_M_contig94.17445.1 vs. uniprot
Match: A0A1V9YQ58_9STRA (Ultraviolet-B receptor UVR8 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YQ58_9STRA) HSP 1 Score: 97.1 bits (240), Expect = 3.980e-18 Identity = 47/91 (51.65%), Postives = 64/91 (70.33%), Query Frame = 1 Query: 1018 ACGRDHSAIITNDGRIWTFGSGLHGQLGLGTVGETSSIPTVVDALIGVGTMRPDGSFTGMEAVACGAWHTAALSTTGDVYTWGWARFGALG 1290
A G H+A+IT G ++T G GL+ QLG G+ + + P V +L+GVG R DG+F+G+ V+CGAWHT AL+TTGD+YTWGW + G LG
Sbjct: 162 AAGAHHTALITLTGELYTMGWGLYHQLGHGSTADLFA-PECVTSLLGVGDYR-DGAFSGLTQVSCGAWHTVALTTTGDIYTWGWGQHGQLG 250
BLAST of mRNA_E-siliculosus-1a_M_contig94.17445.1 vs. uniprot
Match: A0A0L9UW84_PHAAN (Uncharacterized protein n=6 Tax=Vigna TaxID=3913 RepID=A0A0L9UW84_PHAAN) HSP 1 Score: 99.4 bits (246), Expect = 4.060e-18 Identity = 76/215 (35.35%), Postives = 104/215 (48.37%), Query Frame = 1 Query: 697 GSKVADLAAGDDHVIAVGTDGSAWAWGRGDCGQLGYGSPPDGADCDGGGSACVPMAVQLPSPASGTPLDEVGLASTSSGAAGAATGVKSGHGLQDPQKR-PGALVIRAACGRDHSAIITNDGRIWTFGSGLHGQLGLGTVGETSSIPTVVDALIGVGTMRPDGSFTGMEAVACGAWHTAALSTTGDVYTWGWARFGALGPS-------PFVVGSP 1317
G ++A +AAG H +A+ G WAWG G GQLG GS +++ S P + S+ G +AT V+ G + R PG+ + R ACG HSA+IT+ G + TFG GL+GQ G G+ + S PT V +L+G+ +E VA G WHT S GDVY +G +FG LG P +V SP
Sbjct: 250 GIRIASVAAGGRHTLALSDTGLVWAWGYGGEGQLGLGS-----------------RIRMVSSPHLVPCID----SSYYGKDRSATLVRGSMGSEGQSFRVPGSYIKRIACGGRHSAVITDAGALLTFGWGLYGQCGQGSTDDELS-PTCVSSLLGIH----------IEGVAAGLWHTVCTSADGDVYAFGGNQFGQLGTGADQAETLPRLVDSP 432
BLAST of mRNA_E-siliculosus-1a_M_contig94.17445.1 vs. uniprot
Match: A0A6P4MW89_GOSAR (ultraviolet-B receptor UVR8-like n=33 Tax=Malvaceae TaxID=3629 RepID=A0A6P4MW89_GOSAR) HSP 1 Score: 98.2 bits (243), Expect = 8.350e-18 Identity = 71/198 (35.86%), Postives = 99/198 (50.00%), Query Frame = 1 Query: 697 GSKVADLAAGDDHVIAVGTDGSAWAWGRGDCGQLGYGSPPDGADCDGGGSACVPMAVQLPSPASGTPLDEVGLASTSSGAAGAATGVKSGHGLQDPQKRPGALVIRAACGRDHSAIITNDGRIWTFGSGLHGQLGLGTVGETSSIPTVVDALIGVGTMRPDGSFTGMEAVACGAWHTAALSTTGDVYTWGWARFGALG 1290
G ++A +AAG H +A+ +G W WG G GQLG GS + M V P P +G S+ + G+ + + + PG+ V ACG HSA+IT+ G + TFG GL+GQ G G+ + S PT V AL+G+ +E+VA G WHT +ST GDVY +G +FG LG
Sbjct: 229 GVRIATVAAGGRHTLALSDNGQVWGWGYGGEGQLGLGSR-------------IRM-VSSPHPIPCIEPSSLGKDRASALSRGSLSSERQSFRV------PGSYVKGIACGGRHSAVITDAGALLTFGWGLYGQCGQGSTDDELS-PTCVSALLGIR----------IESVAAGLWHTVCVSTDGDVYAFGGNQFGQLG 395
BLAST of mRNA_E-siliculosus-1a_M_contig94.17445.1 vs. uniprot
Match: A0A0B0PG70_GOSAR (RCC1 domain-containing 1 n=1 Tax=Gossypium arboreum TaxID=29729 RepID=A0A0B0PG70_GOSAR) HSP 1 Score: 97.4 bits (241), Expect = 8.620e-18 Identity = 71/198 (35.86%), Postives = 98/198 (49.49%), Query Frame = 1 Query: 697 GSKVADLAAGDDHVIAVGTDGSAWAWGRGDCGQLGYGSPPDGADCDGGGSACVPMAVQLPSPASGTPLDEVGLASTSSGAAGAATGVKSGHGLQDPQKRPGALVIRAACGRDHSAIITNDGRIWTFGSGLHGQLGLGTVGETSSIPTVVDALIGVGTMRPDGSFTGMEAVACGAWHTAALSTTGDVYTWGWARFGALG 1290
G ++A +AAG H +A+ G W WG G GQLG GS + M V P P +G S+ + G+ + + + PG+ V ACG HSA+IT+ G + TFG GL+GQ G G+ + S PT V AL+G+ +E+VA G WHT +ST GDVY +G +FG LG
Sbjct: 163 GVRIATVAAGGRHTLALSDTGQVWGWGYGGEGQLGLGSR-------------IRM-VSSPHPIPCIEPSSLGKDRASALSRGSLSSERQSFRV------PGSYVKGIACGGRHSAVITDAGALLTFGWGLYGQCGQGSTDDELS-PTCVSALLGIR----------IESVAAGLWHTVCVSTDGDVYAFGGNQFGQLG 329 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig94.17445.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig94.17445.1 >prot_E-siliculosus-1a_M_contig94.17445.1 ID=prot_E-siliculosus-1a_M_contig94.17445.1|Name=mRNA_E-siliculosus-1a_M_contig94.17445.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=624bp MKRGQEILVGVGDSSFCQVPCPWASWSRQPVDENSKSSSSNDDVRRVQTKback to top mRNA from alignment at E-siliculosus-1a_M_contig94:513855..516511+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig94.17445.1 ID=mRNA_E-siliculosus-1a_M_contig94.17445.1|Name=mRNA_E-siliculosus-1a_M_contig94.17445.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=2657bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig94:513855..516511+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig94:513855..516511+ >mRNA_E-siliculosus-1a_M_contig94.17445.1 ID=mRNA_E-siliculosus-1a_M_contig94.17445.1|Name=mRNA_E-siliculosus-1a_M_contig94.17445.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=3744bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig94:513855..516511+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |