Homology
BLAST of mRNA_E-siliculosus-1a_M_contig94.17444.1 vs. uniprot
Match:
D8LN12_ECTSI (Protein YIPF n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LN12_ECTSI)
HSP 1 Score: 391 bits (1005), Expect = 1.120e-130
Identity = 206/209 (98.56%), Postives = 208/209 (99.52%), Query Frame = 2
Query: 56 MAEAMAMAEFDGGIGMQTAERTPQSMMNTLDEPVSETIMRDLRSVGAKLKIVLNPRGDQDGVLTKLKDWDLWGPLMVCLTLSIVLSVSAPADQGALVFAAVFVVVWCGAALVTLNAQLLGGTISFFQSVCVLGYCVFPLLVSAVICLVLSLFNLMNVFVRVAVVLVGFVWATRASKVFISEIISDERKMLAVYPVFFFYTFISWMIVIH 682
MAEAMAMAEFDGGIGMQTAERTPQSMMNTLDEPVSETIMRDLRSVGAKLKIVLNPRGDQDGVLTKLKDWDLWGPLMVCLTLSIVLSVSAPADQGALVFAAVFVVVWCGAALVTLNAQLLGGTISFFQSVCVLGYCVFPLLVSAV+CL+LSLFN MNVFVRVAVVLVGFVWATRASKVFISEIISDERKMLAVYPVFFFYTFISWMIVIH
Sbjct: 1 MAEAMAMAEFDGGIGMQTAERTPQSMMNTLDEPVSETIMRDLRSVGAKLKIVLNPRGDQDGVLTKLKDWDLWGPLMVCLTLSIVLSVSAPADQGALVFAAVFVVVWCGAALVTLNAQLLGGTISFFQSVCVLGYCVFPLLVSAVVCLILSLFNFMNVFVRVAVVLVGFVWATRASKVFISEIISDERKMLAVYPVFFFYTFISWMIVIH 209
BLAST of mRNA_E-siliculosus-1a_M_contig94.17444.1 vs. uniprot
Match:
A0A7S1UDR8_9STRA (Protein YIPF n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UDR8_9STRA)
HSP 1 Score: 265 bits (676), Expect = 1.210e-81
Identity = 136/190 (71.58%), Postives = 163/190 (85.79%), Query Frame = 2
Query: 110 AERTPQSMMNTLDEPVSETIMRDLRSVGAKLKIVLNPRGDQDGVLTKLKDWDLWGPLMVCLTLSIVLSVSAPADQGALVFAAVFVVVWCGAALVTLNAQLLGGTISFFQSVCVLGYCVFPLLVSAVICLVLSLFNLMNVFVRVAVVLVGFVWATRASKVFISEIISDERKMLAVYPVFFFYTFISWMIVI 679
A+ +M TLDEPVSETIMRDLR V KLK+VL PR DQ+GV+ KLKDWDLWGPL+VCLTLS++LSV+AP Q ALVFA+VF V+WCGAA+VTLNAQLLGGTISFFQSVCVLGYCVFPL ++A++C+ LSL L ++ VR VV++GFVWATRAS VFI++II ERK+LAVYPVFFFYTF+SWMI++
Sbjct: 2 ADNMVTAMPTTLDEPVSETIMRDLRQVADKLKVVLLPREDQEGVVQKLKDWDLWGPLLVCLTLSLLLSVTAPESQKALVFASVFFVIWCGAAVVTLNAQLLGGTISFFQSVCVLGYCVFPLTIAAIVCVFLSLIGLGHIAVRCIVVVLGFVWATRASVVFIAKIIKAERKILAVYPVFFFYTFLSWMILL 191
BLAST of mRNA_E-siliculosus-1a_M_contig94.17444.1 vs. uniprot
Match:
A0A836CPM4_9STRA (Protein YIPF n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPM4_9STRA)
HSP 1 Score: 258 bits (658), Expect = 7.900e-79
Identity = 136/201 (67.66%), Postives = 167/201 (83.08%), Query Frame = 2
Query: 83 FDGGIGMQTAERTPQSMM--NTLDEPVSETIMRDLRSVGAKLKIVLNPRGDQDGVLTKLKDWDLWGPLMVCLTLSIVLSVSAPADQGALVFAAVFVVVWCGAALVTLNAQLLGGTISFFQSVCVLGYCVFPLLVSAVICLVLSLFNLMNVFVRVAVVLVGFVWATRASKVFISEIISDERKMLAVYPVFFFYTFISWMIVI 679
+DG +G P +M NTLDEPVSETIMRDLR VG+KLKIVL P+GDQ+GVL KLK+WDLWGPL+VCL LSI+LS +APA+QGALVFA+VFVVVWCGAA+VT+NAQLLGG ISFFQSVCVLGYCVFPL++++ CL+ + F+R +V+VGF+W+TRAS VFI +IIS ERK+LAVYPVFFFY F+SWM+++
Sbjct: 7 YDGRLG-----GAPGNMAYYNTLDEPVSETIMRDLRQVGSKLKIVLMPKGDQEGVLKKLKEWDLWGPLLVCLVLSIMLSSTAPANQGALVFASVFVVVWCGAAMVTVNAQLLGGGISFFQSVCVLGYCVFPLVLASAACLIAKALTGLF-FIRALLVVVGFMWSTRASVVFIKQIISPERKVLAVYPVFFFYAFLSWMVLL 201
BLAST of mRNA_E-siliculosus-1a_M_contig94.17444.1 vs. uniprot
Match:
A0A7S2V1N2_9STRA (Protein YIPF n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1N2_9STRA)
HSP 1 Score: 256 bits (654), Expect = 2.800e-78
Identity = 135/180 (75.00%), Postives = 156/180 (86.67%), Query Frame = 2
Query: 140 TLDEPVSETIMRDLRSVGAKLKIVLNPRGDQDGVLTKLKDWDLWGPLMVCLTLSIVLSVSAPADQGALVFAAVFVVVWCGAALVTLNAQLLGGTISFFQSVCVLGYCVFPLLVSAVICLVLSLFNLMNVFVRVAVVLVGFVWATRASKVFISEIISDERKMLAVYPVFFFYTFISWMIVI 679
TLDEPVSETIMRDL+ V KLK+VL PR +Q GVL KLK+WDLWGPLMVCLTLS++L +APADQ ALVFAAVFVVVW GAA+VTLNAQLLGGTISFFQSVCVLGYCVFPL V A++ L++ L N+FV++ +V +GF WATRAS VFI++IIS +RK+LAVYPVFFFYTFISWMIVI
Sbjct: 19 TLDEPVSETIMRDLKQVYGKLKVVLLPRENQQGVLHKLKEWDLWGPLMVCLTLSMLLCATAPADQTALVFAAVFVVVWVGAAIVTLNAQLLGGTISFFQSVCVLGYCVFPLTVVALVLLLVRLLIFNNIFVKLVLVAIGFAWATRASVVFIAQIISPQRKILAVYPVFFFYTFISWMIVI 198
BLAST of mRNA_E-siliculosus-1a_M_contig94.17444.1 vs. uniprot
Match:
I2CPI6_NANGC (Protein YIPF n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPI6_NANGC)
HSP 1 Score: 235 bits (600), Expect = 3.450e-70
Identity = 120/180 (66.67%), Postives = 154/180 (85.56%), Query Frame = 2
Query: 140 TLDEPVSETIMRDLRSVGAKLKIVLNPRGDQDGVLTKLKDWDLWGPLMVCLTLSIVLSVSAPADQGALVFAAVFVVVWCGAALVTLNAQLLGGTISFFQSVCVLGYCVFPLLVSAVICLVLSLFNLMNVFVRVAVVLVGFVWATRASKVFISEIISDERKMLAVYPVFFFYTFISWMIVI 679
TLDEPV +T+ RDL VG+KL++VL PR +QDGVL KLKDWDLWGPL+VCLTLSI+LS++AP +QGALVFAAVF VVW GAA+VT+NAQLLGGTISFFQS+C+LGYCVFPL ++A+ L++ L ++ V+ VV VGF WATRAS VFI ++I+ ERK+LA++PVFFFYTF++W+++I
Sbjct: 28 TLDEPVWQTVKRDLTQVGSKLQVVLLPRENQDGVLKKLKDWDLWGPLLVCLTLSILLSITAPEEQGALVFAAVFFVVWFGAAVVTMNAQLLGGTISFFQSLCILGYCVFPLDIAALANLLIGL-AFQSLVVKAVVVAVGFAWATRASVVFIGQVIAPERKVLALFPVFFFYTFLAWLVLI 206
BLAST of mRNA_E-siliculosus-1a_M_contig94.17444.1 vs. uniprot
Match:
A0A1V9Z1I2_9STRA (Protein YIPF n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z1I2_9STRA)
HSP 1 Score: 225 bits (574), Expect = 1.550e-66
Identity = 113/183 (61.75%), Postives = 149/183 (81.42%), Query Frame = 2
Query: 131 MMNTLDEPVSETIMRDLRSVGAKLKIVLNPRGDQDGVLTKLKDWDLWGPLMVCLTLSIVLSVSAPADQGALVFAAVFVVVWCGAALVTLNAQLLGGTISFFQSVCVLGYCVFPLLVSAVICLVLSLFNLMNVFVRVAVVLVGFVWATRASKVFISEIISDERKMLAVYPVFFFYTFISWMIVI 679
++NTLDEPVSETIMRD+R VG+KLK+VL P+ D L L+DWDLWGPLMVCLTLSI+LS++AP +Q A+VF +VFVVVW GAA+VT+NAQLLG TISFFQS+CVLGYCVFPL+++ + C + + + +V +R+ V +GF+W+TRAS VF+S+++ ++K L VYPV FY FISWMI+I
Sbjct: 13 VVNTLDEPVSETIMRDVRLVGSKLKVVLAPKNTSDETLQALRDWDLWGPLMVCLTLSIMLSMTAPTNQSAMVFTSVFVVVWVGAAVVTINAQLLGSTISFFQSICVLGYCVFPLVIATIACFLTRVVS-SHVAIRLVFVGIGFIWSTRASVVFMSQLVPPKKKALTVYPVLLFYIFISWMILI 194
BLAST of mRNA_E-siliculosus-1a_M_contig94.17444.1 vs. uniprot
Match:
F0Y2B8_AURAN (Protein YIPF n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y2B8_AURAN)
HSP 1 Score: 225 bits (573), Expect = 1.960e-66
Identity = 124/180 (68.89%), Postives = 144/180 (80.00%), Query Frame = 2
Query: 140 TLDEPVSETIMRDLRSVGAKLKIVLNPRGDQDGVLTKLKDWDLWGPLMVCLTLSIVLSVSAPADQGALVFAAVFVVVWCGAALVTLNAQLLGGTISFFQSVCVLGYCVFPLLVSAVICLVLSLFNLMNVFVRVAVVLVGFVWATRASKVFISEIISDERKMLAVYPVFFFYTFISWMIVI 679
TLDEPV ETIMRDLR VGAKLK+V+ PR Q+GVL +LK+WDLWGPL VCL LSIVLSVSAP Q ALVFAAVFVVVW GAA+VTLNAQLLGG ISFFQSVC+LGY +FPL V A++CLVL ++ +R VV V F W+TR S VF EII +R+ LA+YPVF FY+FI+WMI+I
Sbjct: 12 TLDEPVRETIMRDLREVGAKLKLVILPRVSQEGVLDRLKEWDLWGPLAVCLALSIVLSVSAPEAQRALVFAAVFVVVWVGAAIVTLNAQLLGGRISFFQSVCILGYSIFPLNVGALLCLVLHPVT-KSLLLRALVVGVCFAWSTRVSVVFFGEIIEAKRRALAIYPVFGFYSFIAWMILI 190
BLAST of mRNA_E-siliculosus-1a_M_contig94.17444.1 vs. uniprot
Match:
A0A485KII9_9STRA (Protein YIPF n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A485KII9_9STRA)
HSP 1 Score: 225 bits (573), Expect = 2.550e-66
Identity = 113/185 (61.08%), Postives = 147/185 (79.46%), Query Frame = 2
Query: 125 QSMMNTLDEPVSETIMRDLRSVGAKLKIVLNPRGDQDGVLTKLKDWDLWGPLMVCLTLSIVLSVSAPADQGALVFAAVFVVVWCGAALVTLNAQLLGGTISFFQSVCVLGYCVFPLLVSAVICLVLSLFNLMNVFVRVAVVLVGFVWATRASKVFISEIISDERKMLAVYPVFFFYTFISWMIVI 679
Q TLDEPVSETI+RD+R VG+KLK+VL P+ D L L+DWDLWGPL+VCL LSI+LS++AP +Q A+VF VFVVVW GAA+VT+NAQLLG TISFFQS+CVLGYCVFPL+++ ++ V L +L +V VR+ +V VGF+W+TRAS VF+S+++ +R+ L VYPV FY FI+WMI+I
Sbjct: 15 QKKETTLDEPVSETILRDVRLVGSKLKVVLMPKNTSDQTLQALRDWDLWGPLLVCLVLSIMLSITAPTNQSAMVFTGVFVVVWAGAAVVTVNAQLLGSTISFFQSICVLGYCVFPLVIATLVNTVFRLASLGHVAVRIVIVAVGFIWSTRASVVFMSQLVPPKRQALTVYPVLLFYLFIAWMILI 199
BLAST of mRNA_E-siliculosus-1a_M_contig94.17444.1 vs. uniprot
Match:
A0A067CCZ0_SAPPC (Protein YIPF n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CCZ0_SAPPC)
HSP 1 Score: 224 bits (570), Expect = 5.970e-66
Identity = 115/181 (63.54%), Postives = 148/181 (81.77%), Query Frame = 2
Query: 137 NTLDEPVSETIMRDLRSVGAKLKIVLNPRGDQDGVLTKLKDWDLWGPLMVCLTLSIVLSVSAPADQGALVFAAVFVVVWCGAALVTLNAQLLGGTISFFQSVCVLGYCVFPLLVSAVICLVLSLFNLMNVFVRVAVVLVGFVWATRASKVFISEIISDERKMLAVYPVFFFYTFISWMIVI 679
NTLDEPVSETI+RD+R VG+KLK+VL PR D L L+DWDLWGPLMVCL LSI+LS++APA+Q A+VF +VFVVVW GAA+VT+NAQLLG TISFFQS+CVLGYCVFPL+++ + C + + + +V +R+ +V VGFVW+TRAS VF+S+++ ++K L VYPV FY FISWMI+I
Sbjct: 15 NTLDEPVSETILRDVRLVGSKLKVVLMPRNTSDETLQALRDWDLWGPLMVCLMLSILLSLTAPANQSAMVFTSVFVVVWVGAAVVTVNAQLLGSTISFFQSICVLGYCVFPLVIATLACFLTRVVS-SHVTIRLILVGVGFVWSTRASVVFMSQLVPPKKKALTVYPVLLFYIFISWMILI 194
BLAST of mRNA_E-siliculosus-1a_M_contig94.17444.1 vs. uniprot
Match:
A0A8J2SB60_9STRA (Protein YIPF n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SB60_9STRA)
HSP 1 Score: 220 bits (561), Expect = 1.210e-64
Identity = 122/180 (67.78%), Postives = 138/180 (76.67%), Query Frame = 2
Query: 140 TLDEPVSETIMRDLRSVGAKLKIVLNPRGDQDGVLTKLKDWDLWGPLMVCLTLSIVLSVSAPADQGALVFAAVFVVVWCGAALVTLNAQLLGGTISFFQSVCVLGYCVFPLLVSAVICLVLSLFNLMNVFVRVAVVLVGFVWATRASKVFISEIISDERKMLAVYPVFFFYTFISWMIVI 679
TLDEPVSETI RDLR VGAKLK+VL PR Q GVL +LK+WDLWGPL VCLTLSI LS AP Q ALVFAAVFVVVW GAA+VTLNAQLLGG ISFFQSVCVLGY +FPL A CL+L + +R+AVV F W+TR S VF SEII +R+ LA+YPVF FY F++WMI+I
Sbjct: 13 TLDEPVSETIRRDLREVGAKLKLVLLPRASQHGVLDRLKEWDLWGPLAVCLTLSIALSAGAPESQRALVFAAVFVVVWAGAAIVTLNAQLLGGRISFFQSVCVLGYSIFPLDCGAFACLLLHALT-RSFLLRLAVVGTCFAWSTRVSVVFFSEIIEAKRRALAIYPVFGFYAFLAWMILI 191
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig94.17444.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90 )
Total hits: 25
0 1 Expect = 1.12e-130 / Id = 98.56 Expect = 1.21e-81 / Id = 71.58 Expect = 7.90e-79 / Id = 67.66 Expect = 2.80e-78 / Id = 75.00 Expect = 3.45e-70 / Id = 66.67 Expect = 1.55e-66 / Id = 61.75 Expect = 1.96e-66 / Id = 68.89 Expect = 2.55e-66 / Id = 61.08 Expect = 5.97e-66 / Id = 63.54 Expect = 1.21e-64 / Id = 67.78 Sequence D8LN12_ECTSI A0A7S1UDR8_9STRA A0A836CPM4_9STRA A0A7S2V1N2_9STRA I2CPI6_NANGC A0A1V9Z1I2_9STRA F0Y2B8_AURAN A0A485KII9_9STRA A0A067CCZ0_SAPPC A0A8J2SB60_9STRA Pages
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Start 1 Stop 1 Cds size 630 Model size 1916 Exons 6 Ec32 ortholog Ec-27_000980.1 Ec32 ortholog description terbinafine resistance locus protein (yip1) Hectar predicted targeting category other localisation Best eggNOG OG NA|NA|NA Best tax level Eukaryota COG Functional cat. U EggNOG OGs COG5080@1,KOG2946@2759 EggNOG free text desc. intestinal epithelial cell development GOs GO:0000138,GO:0002064,GO:0002065,GO:0002066,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005794,GO:0005795,GO:0005797,GO:0005798,GO:0005801,GO:0005802,GO:0007275,GO:0008150,GO:0009888,GO:0009987,GO:0012505,GO:0030134,GO:0030135,GO:0030154,GO:0030855,GO:0031410,GO:0031982,GO:0031984,GO:0031985,GO:0032501,GO:0032502,GO:0035295,GO:0042802,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0048468,GO:0048565,GO:0048731,GO:0048856,GO:0048869,GO:0055123,GO:0060429,GO:0060575,GO:0060576,GO:0097708,GO:0098791 Preferred name YIPF6 Seed eggNOG ortholog 2880.D8LN12 Seed ortholog evalue 2.1e-106 Seed ortholog score 391.7 Taxonomic scope Eukaryota
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622936504.0371277-UTR-E-siliculosus-1a_M_contig94:504780..506011 1622936504.0371277-UTR-E-siliculosus-1a_M_contig94:504780..506011 Ectocarpus siliculosus Ec864m_EcPH12_78m male UTR E-siliculosus-1a_M_contig94 504781..506011 - 1696251107.9571087-UTR-E-siliculosus-1a_M_contig94:504780..506011 1696251107.9571087-UTR-E-siliculosus-1a_M_contig94:504780..506011 Ectocarpus siliculosus Ec864m_EcPH12_78m male UTR E-siliculosus-1a_M_contig94 504781..506011 - 1622936504.2207377-UTR-E-siliculosus-1a_M_contig94:513180..513235 1622936504.2207377-UTR-E-siliculosus-1a_M_contig94:513180..513235 Ectocarpus siliculosus Ec864m_EcPH12_78m male UTR E-siliculosus-1a_M_contig94 513181..513235 - 1696251108.0370169-UTR-E-siliculosus-1a_M_contig94:513180..513235 1696251108.0370169-UTR-E-siliculosus-1a_M_contig94:513180..513235 Ectocarpus siliculosus Ec864m_EcPH12_78m male UTR E-siliculosus-1a_M_contig94 513181..513235 -
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622936504.0583584-CDS-E-siliculosus-1a_M_contig94:506011..506121 1622936504.0583584-CDS-E-siliculosus-1a_M_contig94:506011..506121 Ectocarpus siliculosus Ec864m_EcPH12_78m male CDS E-siliculosus-1a_M_contig94 506012..506121 - 1696251107.9761066-CDS-E-siliculosus-1a_M_contig94:506011..506121 1696251107.9761066-CDS-E-siliculosus-1a_M_contig94:506011..506121 Ectocarpus siliculosus Ec864m_EcPH12_78m male CDS E-siliculosus-1a_M_contig94 506012..506121 - 1622936504.1089253-CDS-E-siliculosus-1a_M_contig94:508072..508224 1622936504.1089253-CDS-E-siliculosus-1a_M_contig94:508072..508224 Ectocarpus siliculosus Ec864m_EcPH12_78m male CDS E-siliculosus-1a_M_contig94 508073..508224 - 1696251107.9878092-CDS-E-siliculosus-1a_M_contig94:508072..508224 1696251107.9878092-CDS-E-siliculosus-1a_M_contig94:508072..508224 Ectocarpus siliculosus Ec864m_EcPH12_78m male CDS E-siliculosus-1a_M_contig94 508073..508224 - 1622936504.1525154-CDS-E-siliculosus-1a_M_contig94:509173..509336 1622936504.1525154-CDS-E-siliculosus-1a_M_contig94:509173..509336 Ectocarpus siliculosus Ec864m_EcPH12_78m male CDS E-siliculosus-1a_M_contig94 509174..509336 - 1696251107.9978523-CDS-E-siliculosus-1a_M_contig94:509173..509336 1696251107.9978523-CDS-E-siliculosus-1a_M_contig94:509173..509336 Ectocarpus siliculosus Ec864m_EcPH12_78m male CDS E-siliculosus-1a_M_contig94 509174..509336 - 1622936504.1656556-CDS-E-siliculosus-1a_M_contig94:510376..510467 1622936504.1656556-CDS-E-siliculosus-1a_M_contig94:510376..510467 Ectocarpus siliculosus Ec864m_EcPH12_78m male CDS E-siliculosus-1a_M_contig94 510377..510467 - 1696251108.0077708-CDS-E-siliculosus-1a_M_contig94:510376..510467 1696251108.0077708-CDS-E-siliculosus-1a_M_contig94:510376..510467 Ectocarpus siliculosus Ec864m_EcPH12_78m male CDS E-siliculosus-1a_M_contig94 510377..510467 - 1622936504.1824806-CDS-E-siliculosus-1a_M_contig94:511922..511993 1622936504.1824806-CDS-E-siliculosus-1a_M_contig94:511922..511993 Ectocarpus siliculosus Ec864m_EcPH12_78m male CDS E-siliculosus-1a_M_contig94 511923..511993 - 1696251108.017843-CDS-E-siliculosus-1a_M_contig94:511922..511993 1696251108.017843-CDS-E-siliculosus-1a_M_contig94:511922..511993 Ectocarpus siliculosus Ec864m_EcPH12_78m male CDS E-siliculosus-1a_M_contig94 511923..511993 - 1622936504.2030573-CDS-E-siliculosus-1a_M_contig94:513137..513180 1622936504.2030573-CDS-E-siliculosus-1a_M_contig94:513137..513180 Ectocarpus siliculosus Ec864m_EcPH12_78m male CDS E-siliculosus-1a_M_contig94 513138..513180 - 1696251108.027834-CDS-E-siliculosus-1a_M_contig94:513137..513180 1696251108.027834-CDS-E-siliculosus-1a_M_contig94:513137..513180 Ectocarpus siliculosus Ec864m_EcPH12_78m male CDS E-siliculosus-1a_M_contig94 513138..513180 -
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig94.17444.1
>prot_E-siliculosus-1a_M_contig94.17444.1 ID=prot_E-siliculosus-1a_M_contig94.17444.1|Name=mRNA_E-siliculosus-1a_M_contig94.17444.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=210bp
MAEAMAMAEFDGGIGMQTAERTPQSMMNTLDEPVSETIMRDLRSVGAKLK back to top mRNA from alignment at E-siliculosus-1a_M_contig94:504781..513235-
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig94.17444.1 ID=mRNA_E-siliculosus-1a_M_contig94.17444.1|Name=mRNA_E-siliculosus-1a_M_contig94.17444.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=8455bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig94:504781..513235- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)CTGCGCATACGACACAGAGAAAAAAACTCTAGCAGGGGAGCGTGCGCAAG
CGAAG ATGGCGGAAGCTATGGCAATGGCAGAGTTTGATGGTGGCATCG GT
GAGTGAAACCTGTTTGTTCCAATTAATAGCATCTACTGCGGCATATCTGG
AGTGAAGAACAGCGTGTGTTGGGACTTACCGCAGTCTATGCCATGGCCCA
AGAGTTGCGCGAGGGTCAAGCGAGAGAGAGGGAGAGAGCAGAGAGGGCTT
GTGTGGTAGATTGCGTTACAAGCGCATGCATGTGCTCACACTTTGTTTCG
TGCTCTCTAAGGCGTGTGTGCAGAATTTTGAACCGGACATTTTCCGGACA
GAGGTTTGCGGACAGAGGCAGCATACCAAAGCGGGTCGTTACACAGCAGA
GCCTTGGCTCTGAGGGCACGACCAACACACGCGAGGTCACGCAGCCGCAC
AACCCGATAGATAACAGTTTTAAAACTCCAACACAGTTGATGGACCTGCG
AGCTCTTGGGGCTCTGCTCTTGGAGCATTGGAATTGCTATAGACACAAGA
ACAGCGCTGAATAGCGCGAAGCAACCGACTGACAGCACTTAGGGTGACCG
CCGAGCTTACCGCGGGCGAGTGAGTTCTCTGCAGTGCTTGCTGCACATGA
CTTTCGGCTATTGTACATCCGGCGGTGGGACGTTTTTGTTACGCTAGTTT
GAACAAAGAGCCTGCGGCGTATCTATGTTGCGTACATCAGAGTGCGGCCG
GCTGTACTTGTACCAAGCGTGAGACCCAACCGACCGAGCTTTTAAGAGTC
AGAAACTCTCTTAGGACAGTCGTGTGTCCTGCTTCGTCTCACGTGTCAGC
AGCTTCGCACCCTACGATCGATACCGCCGTGTGCAGCGCAGCACCGCCGT
TCAAAGTGGATGTTATGTATAAGATACTAGCATTTACCTCGGAAAGAAAA
CCGCGGCAGAACCCTATGTAAATTTACCGTCCGTAGCTTGTGTTGTTGGT
CGTATGCATAGGTATGCGTATGTAGCCACGTCGCAACGACTACGGTAGAT
AGTGTAGACCTACGCCTGCGACACATAAACGTGATCAACTAACTGGAGCC
CATCTTGACATGTATACGCACTTGTTGTGGAGTGTTGCGGGAACATGTTT
GGGACATGGCAGGCTTTGTTGAATCCCCCACCCCCCTTTTCGCTCCTCGC
CTCCTTTTCGCACGCTCTTCGCCTCCTTTTTTTCGCACGCAGGTATGCAA
ACAGCAGAACGAACACCGCAGAGCATGATGAACACGTTGGATGAGCCAGT
CTCCGAAACCATT GTGAGAGTCACAGCATTGAAATAGTTCACGCTTGGTC
TTTCCCGTAACCTCTTCTCGGGGTGTGCTTTAGCGAGGGTCCCCGAATAA
CGCGGTCTGGATGTGCAGGTCGTCCTTTTTGTGTGTGGCTGGTGAAAGTG
ACTGGCATAGCCGGAACAATCAAGTTGTTCTACACATTGAATACGGCATC
TGCCCCATTGCAAGGCGACCATTTTCAGCTGCCCCACCACCGCCTTATTC
GTGGACACCTCGCTGTACTGTAAGTCAGCCTGCACCAACCAACGATTTGG
TCATTGCACTTGTTTCTGCAGTCTCCACGCCTGCCCATCGTGCATGCCCT
ACGGCCTTAGCAACCGCTATCACACCATGGGACCAGTCATGGCTGGCTGG
TTTAGTTTCGGTTGGTAAAGGCTTGGCTGCGGGTACGATCGCATTATTGT
ACTCGCATGCGGACGGTCCACGATCTACGCATGTGCCACAATGGTATTGG
CATGATGTTGCGCTCTATACACCCTATAGGGCCGGGGAGAGTTCACCGTA
AGAAAGGGGATGGCCAGTTTTCGGGAGGGTGTACTCATAGCCGTGCAATT
TTCGGAGTGGGGGTAGGGGGACCCCACGGTAGGGTTGAGGCCCGCCGGTT
ACCCGGGTTATCCGGATACCCGGCCTACCCGGGTACCCGGCTATTTTCCG
GAGGTGAGGCCCGAACCCGGTTTGGGTATTTTGAGAGCGGGCATGCCCGC
CGGGTAGACGGGTACCCGTCCAACGGACCTCAACCCTACCCCACGGACAG
CTATCTACAACTGTGTTTGATTGTGTTCGCGTTGTTTTTTCCCAGCAGAT
CGCGCTGACGTCGTGTGGGCCGTGTTGTTACGAGGCATACATTTCATTCC
GTGGCATGGTGTATTTTCGAGGGAAGCAGGAATACGCCGTTCCGGACATA
TTTTCACATTTTTTTTGGAAGACACGGGCTGTGGTGCGCCAACAGTTGAC
AACCATGTGTTTGCCCCCTCGTTGTTTCGAACGAGTCATTTGTGGTTCCG
AAACGAAAGAGCTCAAAGCGGTGCGGAGGCGGCTTAGCCACTTTTGAGGG
AGGTAGACGCTCGACCGCACTCCCTTCGGGCTGTGCAGCATCCGTTCGCA
ACGCGGAAGAGCTGAGGTGTTCGCTTGGGTGAGGCACTATTCATGGTGTG
AAGCCAACGAAGAAACAGGATTCAACCAGCAACAACCCACCACCACTACC
ACCACAACAACAACAGAAATAAGAGCGACTCACAACCAAACCTGTGCAAC
ATCTGTTCGCAACGCGGAAGAGCTGAGGTGTTCGCCTGGGGGAGGCACTA
TTCACCGTGCGAAGCCAACCAAGAATACAGGATTAAACCAACCCACCAAC
AACAGAAACAACAGCGACTCAACAACCAAACCTCTTTTCCCTTTGTCACC
ATCGGCGGTCGCTTTCAGATGCGAGACTTGCGATCCGTGGGAGCTAAGCT
AAAGATCGTTCTCAACCCCAGGGGGGACCAAGACGGGGTGCTCACCAAGC
TCAAGGACT GTGAGTGCCGTGTTAGCCTGCCTTTGAACTCACAAGGCCCC
TCTGATTGTTTTTCGGACTATCGTGCCTACCCTCAGCCCGCAACAGCCCA
CGTTCATACCCGGACACGGTAGCATGGCCTCATAATTGTGCGGCAGCACA
GCCCTTGGGGGGGGGGGTGCCGCTTGAGCCAATCTTCCCCTCGCCGTGTC
GCGAAATTGGCTGGGTCGCATGGGGTGGTGCGGTTGCTTGCAGGTTTGGC
GCGTCGAGCTACTAGTTCTTCTCTTCTCTCTCGGAAATCACTTTCTATCT
CGATCATAGACTCTTTGCGTGTCTGATGTACCCTGATGTCGTGATTGCCT
CGGGGTGCCTTGCCCTGTATCCGAAAATGTCCCGCCGAATGATAGAGCGA
GCGTGCCCAACGAAGGTGGCACATCGTGTTATCATCAGGTATTTTTGTTG
TGTTCAAATGAACCCAGAGGGTCAATTCGATCGGCCGCTTTTATAGATCT
ATGTTGTGTTGTCTCGTCAAGATTTGTTTCGACCCCTTTCGTTAGGAGTG
GCCTCCATGGTAAAGATGCCAGGAACTGTGCTACGATCGGTGAGAATTTT
TGCCGGCGGTCTCGACGGAGGGAAGGGCAAAAACATTGAGTGAGTAAGTG
ATTGAGTGACCCCCCCTGCTGGATGATCGGCCAAAACCGGATACTCCCAG
TGCCCTGGCTGTTGAACAGTGAACAGTGCGGGCATATGCATACCGTATAT
GACACAAGATAACACACCCCCTTGACCGATTTTCAAAGCTCGATTTCTCA
ACAGCAGGAAGACTCACAGCGCCGAAAACGGCGGCGTTGGAACCGACTCG
TTGAGAGCTTTTCGAAAATGTATCATTTCGTTTATGTATCCTCTTCGTCG
TCGAGTAATCGAGTTTTGAAAATCGGGCCAGGGGGTGTGTTATCTTGTGT
CATATACGGTACTTACGGCGGCACGCCCCGGCGCGGTCTGGTGCACGATA
CTGACCGCCACCGCTCCCCCCCAAAAAAACTGCGCTCTTTCGTCGCCAGG
GGACTTGTGGGGACCGCTGATGGTGTGCCTGACGCTGTCGATCGTTCTGA
GCGTTTCGGCCCCAGCGGACCAGGGAGCGTTAGTGTTCGCGGCGGTTTTT
GTCGTGGTATGGTGTGGGGCGGCCCTGGTGACACTCAATGCTCAGCTGCT
GGGGGGAACAAT GTGAGTTGTACGAGGGATGGGACGAAATGACATAAAAT
GCAGACAAAGAGAGATAGGGTAGGTGGAGGGAAAGACTGAAGCTAGAGAG
AGAGAGGGGGGGGACGGTAGATGGACGGAGAGATCGAGGTTTTTACGAGA
ACAAGAGACGCAAAGAGTGAGCAGAAACACCCAAGGAGCTTGAATACCGA
AGTACAAGACACATGGATAGAGAGAGGGCGGCAAACACATCCGGCCTATT
TTTGGTAGAGAGATGTGAGTAGCGAAAAGCAGCACAGCGCCATGTCCAGG
AAAGAAGGTGCGGCGAACGCAAATACTCGGCGAACAACAGCAGCTATTTG
GTCCAGAGGGCTATGTATGTCCTCAGCATACCTGGTGTGTGCAGTGTTCG
CAGCTGTACATTATCCGTGGTGGTTATACTGAAGATTGGGGCGGAACGGA
GCCTTGATTGGCACGTCGTACCGCGCAGTTCTTTTGGAGAGGGGAGGCGC
CGCGTGAGAGGAGATGCTCATTGTATCAGGGTACAACACCCCGTGTCCCC
CCCCGGGTCTCTACTGTGTGGCCGTTTGCGCAATTGGCCACGACAAGGAA
GAGGCGGCCGGGCAACTATATACAACACGAGTAATTGCGCAGCCGCAGCA
TACTACTGTTGGATCATTTCGCCAGCAGCTCGTTTGGAGCCGGGGGGGGG
GGATGACGTCGAAGAGGGGCAAAGCGGTGGGTGGGTGGGAACAGCTGACT
GATTGACTTGGTGGAGCTGTGGGCATCGGTGGCATAACGAACGATAAGTT
GGAAGGACGGTCGGTAGTGGTGCAGGGGAGACTGTTCCACCGTCGACCAA
AAAACAAATACTTCGTGATGAGCTTTGCATGTCTTGTGGACCATGTTTTG
TGAAACAGGCGCCAGACTCCTCGTCATATACCCCCGTTCCCCCCGCCGCC
CGCGTGCGCAGCTCCTTCTTCCAGAGCGTGTGCGTGCTGGGTTACTGCGT
GTTCCCGCTGCTGGTGTCGGCGGTGATCTGCCTCGTCCTGAGCCTCTTTA
ATTTGATGAACGTCTTCGTACGTGTGGCCGTTGTGCTGGTAGGCTTCGTC
TGGGCAACCCGAG GTATGCATGCGTCCTGCGCGTTGCGTCCATCATCTCT
CAGCGCGTGTGCGCGAAATAGTTAAAAAAGACATTGTGGGCACCGAGTAT
GTCCGCGAGTCTTGCTCGCCTGCTGTGTGTGTGTGTACTCCGTGTGTTGA
TTCAGTTGGCGTCGATCGCGCTCCCGGGCCGAGCGCCGAGCATACGCCTT
GTCTGGTCGGAGGGGGTGTACTCATAGTCGTGCATGCCGTAGTCGTTAGA
CCATTGACCTCGCATCCCTACAAAGCCGGGACGGAGCACGCCGGGTTCTC
ACCGGACCAGGCTCTCACATCACCAAGCGCGAAGCGCCGTGAGGTATTCG
GCGAGTCGCATGAAGGGTGAGCTGCATCCTGCTAAGGGTGTTCGGCATCT
TGTGCTTACTTTCTTGCGTACGGATGACAGCTGCGTATGACTTAGTTTGT
TTTCTGGTGCTTTCACTTCCAGACACAGTTGTAAGCATTGTGTAACTGTC
TCGAGGATGCTTTACCATTTTAACACAACGTGGTGCGATCATCCCCCTTG
CGCGGAGTGAGGGTTCTCCACTCCACACAACATGATCTACTCGACCACCA
TTATGGTTACCGCCAAAAAAAAAACCAGACGTAAAAAAAAAAACGGTAAC
CTGGTTGCCGTGGTCGGAGGGGGGGGGGGGTACTCATAGTCGTGCATGCC
GTAGTCGTTAGACCATTGACCTCGCATCCCTACAAAGCCGGGACGGAGTA
CGCCGGGTTCTCACCGGACCAGGCTCTCACATCACCAAGCGCGAAGCGCC
GTGAGGTATTCGGCGAGTCGCACGAAGGGTGCGCCGCATCCTGCTAAGGG
TCGGAGGGGGGTGGTCGTATTGTGCGTGGCCCCTTGGTGGTTGCTTGCTG
GTAGGCTCGCGTTGTCTGGGGAACCGAAGTGCCAGCCTATCTTGACTTGT
TGATTCGCCGCGCACATGACGCGGGATGCTCCAGAGGTATTGCGTGCGGA
TGTGGGACGATCACACACCGGTGACTGCTTTGTGGGCTTTGTGGAGGGGC
AACACCGTGCAGCACCTTTGAAGGCGCTCGTGGTCTGTGTTCTTGACTTG
TTTTTTGTGGAATGGAAATCCCCATAACACTGACTCGAAGACGCACATGG
GTTCATTCCACTGTTACCCCCTCATTCCCTGGCGGTAACACGTCCGTCTG
TCCCGTTGTATGTGGTTTTACTGTTAACACCGTCCATCTGACGTTCCGAA
AGCGTTCCCTTGGGTAGTAGTCGCGGCGGAGAGTCTGCAAGGCGACTTGG
TTTGGTTTTGTCTTGATCTCTCGAGCTGACTCCCCTAACAATTCAGGGGT
GACGACTGCCTAAAATCAAGCACCATGTGTCCATGGTATGATTTTTCTCC
GCCGAAGAGCGCTCAAATCGACACGCAGAACGCCTTATTTATGTTTTTTT
CCCTCTTCCACCGCACTTTCTTCCGCGAGTACTCGAGACAGCCGTGTCTT
TTTTCTGGATTTCGATTCTCAATATTGTTTCAAATCAAACAAAGTGTTTG
TTGCCTGCGAGCCAGTCCCCGACCCCTCTCTCTTCTCACGAAGGAAGGGA
ATTTACATAAAAGAAATTGCTTGAGTTCATCTCAGACATCGTTGCAAAGC
CCCACACGCTATCATGTGTCGTTTCTGTTGGCCATCCTGTCGTCGCTTGT
GTTATGCTCTTTGTCGCACACAAGCATGCTTTGCTCTGTTTTCTGCGCCC
CGCCCCGACCCCGAAGCGGGGGGTTCGTGAAGTTTTTATGTTTGTTCTTG
CCTCCCTACAACCGTTGTGTTTCTCCGACTCTATTTTGCTTGCCGAGTTC
CTTTTGCTACTCCCCCCTCTACTTCTCCTAAGCCATTGACCAACGACATG
ACATACCTCCTTGTTTTGCGTTTCTGTTGCGGGTCTCTGTTCGTTACCTT
GCTCCCAATGACAGCGTCGAAGGTGTTCATCTCGGAGATCATCTCAGACG
AGCGCAAGATGCTGGCCGTGTACCCAGTGTTCTTCTTCTACACCTTCATC
AGTTGGATGATTGTTATACACTGA AGATGTGATCTGACGAATTTTTCGTT
CGCTCTCTCTCGGACTGCGGCAGTGTGCAATGTTCGCCCGTGGTTGTATC
ATCGACCGGTCGCTTGTCTTGCAACACCACCTCAGAGACATGGCGTGCGA
CGGTAGAGCAGACTGAGGGGAGGGTGACAGTGGAACGTCTGGAACCCCTG
AACCGGTGAATGTGAAGACGATCGTTGTGGCTCAACTCTTTTTTCGTCGA
ATCACTGTGTTGCAGTGCGGGGAGGGTTGCACATGTTAGTTTAACCCATG
GTCGCCCAGCATTTCCGCACGGGGCAACCCTCTCCATACTGCTATTTTCA
TGGTAGAGGCACCTCTTGGGCGCGCCTTTACGATAGCGTGACGGGACCGT
GCATCTGGGTGTCTGTACGACACCTGCCTGCGCACCAGCGCGTGGTGTTT
TCGTTTGTTGTTCTCGGTCTCGGGGGTATGTTGATTTCCGTTGTCGTAGA
CGTTGTGTCTATTCTATAGCGTGTGTTTGTGTTTGTGCCACTGCTGTGTG
TTGCATACTTCTTGATATTCCGCTGATTTGAGAGCGTAGTTTAAGGGACA
CACGTTCGGGTGGTTAGGGGAGGGGCAAGGCGAGAGGTGGCTCGTCGCAT
CGCTCCGGATAATGAATGAACGCAATACGTTTCACGTAATTAATGAATGA
ACGCTATACGTTTCACGTAAACGTTTCGCGTGGTTGAAACGCTGCTCTAC
AACGACGCCGGTGCTGTTCTCTGCTTCGCTCCGTCACCTGTACCGTATAT
GCGCAGCAGAGAGAGGGTTGGGAAGCATTTCGTGAAGTCTACTTCCCGAC
CGAAGACTAAATCTTTTTTTTGCTACTTGAAACGATGTTCCCGCGGTAGA
TCAAGAGTCGGCGACATCTTTAACCCGTGGACTTGCGTTTTGTACGAGCC
GTGGATATCGTCGCCTCAAATGATTCCACGTTGGCAAAGGTTTTTAGTTT
CGTGCGTCGTCAAAGTAACACATTCGTTTTCTTGCTAGGCAGAAATGGGA
GGTGTTTGTTCACTCAAGAGCTGGAAGGGGTGGATGAGACATTGCACCGA
CCGGTGAAGCACACGCACGCAGGACATTGGCGATGGACGGAGACTTCGTC
TGAGTGAGCTAGGTCCGTTCTCCTTACCTACATAGTCGTCTGCACGCGCA
CCAGAGAGGCTTGACGAGAGGGTCCGAGAGAAGAGAGAGAGAGAAATCGA
AACCC back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig94:504781..513235-
>mRNA_E-siliculosus-1a_M_contig94.17444.1 ID=mRNA_E-siliculosus-1a_M_contig94.17444.1|Name=mRNA_E-siliculosus-1a_M_contig94.17444.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1260bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig94:504781..513235- (Ectocarpus siliculosus Ec864m_EcPH12_78m male) back to top