mRNA_E-siliculosus-1a_M_contig94.17441.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig94.17441.1 vs. uniprot
Match: D8LN09_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LN09_ECTSI) HSP 1 Score: 708 bits (1827), Expect = 3.250e-249 Identity = 444/476 (93.28%), Postives = 444/476 (93.28%), Query Frame = 1 Query: 1 MQKPRGRPTFALLCYYLGAATTTRTLPTAVSGFHHPCAARRVRRRPAGQALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRWRSPGQATAXXXXXLQCAXGDDEDDNYGSADYSEYGYEPEFELQGEEPNADEETLARWRLEKLLANDRWQFGKYGTQNVGNWIGDWQEYVAEDLSAGSDPESDIGAMIGIIPGKKFVATTKITRRVIESAEDTKIFEHEQGQATGGEGQGAVGYESEACPQPVVETLFSDSFRGGNGTQVVGNAYTSAETLAVAGGGADGPWIEVGLRVQDVRMRCVFEYGSGAGGSVDAEEGGGVPAXXXXXXXXXXGSTSIRRVFVVREGLDRLPPEDADKEPELYGSAGKGLYDPPSLSRSPLYFSIYAEGGLTMRFPLRVEEGQGGVFSVDWTAGSRRYQADRVFDVLDGSLRRLEVTEIGTQDAEVFLPMEKF 1428
MQKPRGR TFALLCYYLGAATTTRTLPTAVSGFHHPCAARRVRRRPAGQA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXX X NYGSADYSEYGYEPEFELQGEEPNADEETLARWRLEKLLANDRWQFGKYGTQNVGNWIG WQEYVAEDLSAGSDPESDIGAMIGIIPGKKFVATTKITRRVIESAEDTKIFEHEQGQATGGEGQGAVGYESEACPQPVVETLFSDSFRGGNGTQVVGNAYTSAETLAVA GGADGPWIEVGLRVQDVRMRCVFEYG GAGGSVDAE XXXXXXXXXXGSTSIRRVFVVREGLDRLPPEDADKEPELYGSAGKGLYDPPSLSRSPLYFSIYAEGGLTMRFPLRVEEGQGGVFSVDWTAGSRRYQADRVFDVLDGSLRRLEVTEIGTQDAEVFLPMEKF
Sbjct: 1 MQKPRGRATFALLCYYLGAATTTRTLPTAVSGFHHPCAARRVRRRPAGQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNYGSADYSEYGYEPEFELQGEEPNADEETLARWRLEKLLANDRWQFGKYGTQNVGNWIGSWQEYVAEDLSAGSDPESDIGAMIGIIPGKKFVATTKITRRVIESAEDTKIFEHEQGQATGGEGQGAVGYESEACPQPVVETLFSDSFRGGNGTQVVGNAYTSAETLAVAAGGADGPWIEVGLRVQDVRMRCVFEYGPGAGGSVDAEXX--XXXXXXXXXXXXXGSTSIRRVFVVREGLDRLPPEDADKEPELYGSAGKGLYDPPSLSRSPLYFSIYAEGGLTMRFPLRVEEGQGGVFSVDWTAGSRRYQADRVFDVLDGSLRRLEVTEIGTQDAEVFLPMEKF 474
BLAST of mRNA_E-siliculosus-1a_M_contig94.17441.1 vs. uniprot
Match: A0A7S4B393_CHRCT (Hypothetical protein n=2 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B393_CHRCT) HSP 1 Score: 124 bits (312), Expect = 6.480e-27 Identity = 103/314 (32.80%), Postives = 135/314 (42.99%), Query Frame = 1 Query: 475 DEETLARWRLEKLLANDRWQFGKYGTQNVGNWIGDWQEYVAEDLSAGSDPESDIGAMIGIIPGKKFVATTKITRRVIESAEDTKIFEHEQGQATGGEGQGAVGYESEACPQPVVETLFSDSFRGGNGTQVVGNAYTSAETLAVAGGGADGPWIEVGLRVQDVRMRCVFEYGSGAGGSVDAEEGGGVPAXXXXXXXXXXGSTSIRRVFVVREGLDRLPPEDADKEPELYGSAGKGLYDPPSLSRSPLYFSIYAEGGLTMRFPLRVEEGQGGVFSVDWTAGSRRYQADRVFDVLDGSLRRLEVTEIGTQDAEVFLP 1416
D E L ++R ++ AN RWQ + +G+W G Y AE +G + ++P ++ +E + E TG + + A+ + L SF G VG AYT + L G G IEVGLR + R+RC F Y D E G PA + ++ VVRE + A G GLYDPP R+ YFS+Y E GLT+ FP G SVDWTAG+ RYQADR F LDGSL LE+TEI DAE +LP
Sbjct: 152 DMELLEKYRRQQWEANSRWQLNVFAQGQLGSWEGVCTPYAAEVSPSGG---------VEMLPQPSAPCSS---HAAVEKNNAVECSE------TGHDARLALNMQ-----------LTPSSFDREKGCMTVGTAYTMSRRLDAEAAG--GLLIEVGLREKAQRVRCKFLY------LPDDESRGSGPAQMLR----------LEKLAVVRENVVGTAAPAASPP-------GGGLYDPPPGDRTN-YFSLYCEDGLTLVFPTTCATDAAGFISVDWTAGAMRYQADRKFHQLDGSLASLELTEISAADAETYLP 410
BLAST of mRNA_E-siliculosus-1a_M_contig94.17441.1 vs. uniprot
Match: W7TMB2_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TMB2_9STRA) HSP 1 Score: 122 bits (307), Expect = 3.150e-26 Identity = 108/332 (32.53%), Postives = 150/332 (45.18%), Query Frame = 1 Query: 421 SEYGYEPEFELQGEEPN--ADEETLARWRLEKLLANDRWQFGKYGTQNVGNWIGDWQEYVAEDLSAGSDPESDIGAMIGIIPGKKFVATTKITRRVIESAEDTKIFEHEQGQATGGEGQGAVGYESEACPQPVVETLFSDSFRGGNGTQVVGNAYTSAETLAVAGGGADGPWIEVGLRVQDVRMRCVFEYGSGAGGSVDAEEGGGVPAXXXXXXXXXXGSTSIRRVFVVREGLDRLPPEDADKEPELYGSAGKGLYDPPSLSRSPLYFSIYAEGGLTMRFPLRVEEGQGGVFSVDWTAGSRRYQADRVFDVLDGSLRRLEVTEIGTQDAEVF 1410
SEY Y+ E+ Q E D+E LAR+R + +ND+WQ + G W G W EY E S G + E+ + M I G+ R + E T + A GG + V E P SFRG G N ++ + G + E+ +R D R R F Y S PA + +V V +E L + P +EPEL+GS+G+G+YDP + R P + + GGL++ FP + GQ G VDWTAG+ R+QADR+FD DG+L LEVT+IGTQD+ F
Sbjct: 112 SEYEYQSEYTDQQAEIEYLGDDELLARYRADMQNSNDQWQLNLFLKAQTGIWSGVWSEYTPEPNS-GPNGETVL-RMTNIYKGRH-ECEGDYDARSVWWREVTLLHA-----ADGGPLEPVVVGERRMEPT---------SFRGELGAMAADNVFSCSHVRFK--GATEVFEAEIWIRQGDYRTRVTFVYKSPD------------PAY----------AFQASKVLVKKERLGKEGP--TAEEPELFGSSGRGIYDPNA--RVPGSWVLSLHGGLSLAFPPTLPRGQRGAVIVDWTAGTMRFQADRIFDRPDGTLGSLEVTQIGTQDSLTF 398
BLAST of mRNA_E-siliculosus-1a_M_contig94.17441.1 vs. uniprot
Match: A0A0M0JC69_9EUKA (Uncharacterized protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JC69_9EUKA) HSP 1 Score: 112 bits (279), Expect = 1.220e-22 Identity = 100/329 (30.40%), Postives = 142/329 (43.16%), Query Frame = 1 Query: 460 EEPNADEETLARWRLEKLLANDRWQFGKYGTQNVGNWIGDWQEYVAEDLSAGSDPESDIGAMIGIIPGKKFVATTKITRRVIESAEDTKIFEHEQGQATGGEGQGAVGYESEACPQPVVET-LFSDSFRGGNGTQVVGNAYTSAETLAVAGG----GADGPWIEVGLRVQDVRMRCVFEYGSGAGGSVDAEEGGGVPAXXXXXXXXXXGSTSIRRVFVVRE--GLDRLPPEDADKEPELYGSAGKGLYDPPSLSRSPLYFSIYAEGGLTMRFPLRVEEGQGGVFSVDWTAGSRRYQADRVFDVLDGSLRRLEVTEIGTQDAEVFLPMEK 1425
EE DE L ++R ++ N RWQ + +G W G + Y+A+D G M+ K + +T + A +T G EA Q +E L +FR G V +A++ + A GG + +E+ L + R+RC Y D E V SI ++ +VRE G + +A +L G+ G+GLYDPP +S Y S+Y EGG+T+ FP V G GV S+DW AGS RYQ DR + V DGSL LE+TEI DAE+ P +
Sbjct: 140 EEDIEDEALLEQYRQKRWDDNARWQLNTFAQSQLGKWAGHMELYLADDA----------GRML-----PKELKSTACSCEARVCASNTI---------------GLTESLPEAAAQLTLEAELGLAAFRPEVGNMAVASAFSVSRRGADVGGESARAGEPLLLELALGEAERRVRCKLLY------VADRGEAAAVRPY------------SIAQLAIVREVRGGGQFIDGNAGSA-DLDGTPGRGLYDPPPGDKSG-YISLYLEGGMTLAFPTSVAAGAAGVISLDWIAGSMRYQIDRKWKVFDGSLSSLELTEIRKDDAEIVPPSTR 418
BLAST of mRNA_E-siliculosus-1a_M_contig94.17441.1 vs. uniprot
Match: A0A7S0I494_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0I494_9EUKA) HSP 1 Score: 108 bits (270), Expect = 1.510e-21 Identity = 103/327 (31.50%), Postives = 137/327 (41.90%), Query Frame = 1 Query: 460 EEPNADEETLARWRLEKLLANDRWQFGKYGTQNVGNWIGDWQEYVAEDLSAGSDPESDIGAMIGIIPGKKFVATTKITRRVIESAEDTKIFEHEQGQATGGEGQGAVGYESEACPQPVVETLFSDSFRGGN-GTQVVGNAYTSAETLAVAGGGADGPWIEVGLRVQDVRMRCVFEYGSGAGGSVDAEEGGGVPAXXXXXXXXXXGSTSIRRVFVVREGLDRLPPEDADKEPELYGSAGKGLYDPPSLSRSPLYFSIYAEGGLTMR----FPLRVEEGQGGVFSVDWTAGSRRYQADRVFDVLDGSLRRLEVTEIGTQDAEVFLPMEK 1425
EE DEE L R K N RWQ + + +G+W G Y DL D +P AT+ + S D+ + E G EG+ + A TL S+SF G VGNA+T + +G G+ +EVGL+ R+R Y D +E G P +RRV +VRE DA G G GLYD P+ + Y S+Y EGGLT+ PL ++ G S+DWT RYQADR F VLDGSL E+TEI + D++ + P K
Sbjct: 132 EEGLDDEELLEAMRERKWAENARWQLNVFAQEQLGDWQGKCTVY---DLVPAEDG----------VPRLVEAATSACASGAVISGGDSVDWRDELG-----EGEALAAMTTAA-------TLSSESFYPQKQGNMAVGNAFTLS-----SGPGSVPLLLEVGLKEAAERVRAKLVY--------DLDESGAAP------------QMRLRRVAIVREASGA----DAAAADAGLGRPGTGLYDVPAGDKEK-YCSLYCEGGLTLVCPFVLPLAPDDEARGCISLDWTGAKMRYQADRKFGVLDGSLSTFELTEILSTDSQDYTPDFK 403
BLAST of mRNA_E-siliculosus-1a_M_contig94.17441.1 vs. uniprot
Match: A0A0G4G6Y0_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4G6Y0_9ALVE) HSP 1 Score: 89.4 bits (220), Expect = 3.290e-15 Identity = 100/356 (28.09%), Postives = 145/356 (40.73%), Query Frame = 1 Query: 472 ADEETLARWRLEKLLANDRWQFGKYGTQNVGNWIGDWQEYVAEDLSAGSD--PESDIGAMIGIIPGKKFVATTKITRRVIESAEDTKIFEHEQGQATGGEGQGAVGYESEACPQPVVETLFSDSFRGGNGTQVVGNAYTSAET-LAVAGGGADGP--------WIEVGLRVQD--VRMRCVFEYGSGAGGSVDAEEGGGVPAXXXXXXXXXXGSTSIRRVFVVREGLDRLPPE-DADK-----EPELYGSA-GKGLYDPPSLSRSPLYFSIYAEGGLTMRFPLRV------EEGQG---------------GVFSVDWTAGSRRYQADRVFDVLDGSLRRLEVTEIGTQDAEVFLP 1416
+DEE L + R + ND WQF + + G+W G QEY S + E + + + + G ++ I R + + + VE L R G Q+VG A+T + + DGP EVG+R +D R+R + +Y EE G S +R + VVRE R E +A + + +L+ + GKG+YD P +S P Y ++ G LT+ PL+V + QG G SVDWT G RYQADR FD LDGS+ LE TEI +DA+V++P
Sbjct: 95 SDEEILEKMRESRQTTNDMWQFLLFA-EMAGDWEGLTQEYRLSSTSGELELVEEEETSSSLRVEGGTDPSSSRLIFRNLFGANQ--------------------------------VEELSPTDCRPQKGKQIVGTAFTLCTCPTSSSERRPDGPEERPPQSHLCEVGIRSKDNKKRIRVILDY------EQKEEESGP--------------SWELRSLKVVREVRVRSANETEASRTFNRMDTDLFWTQPGKGIYDLPPVSSQPEYRTLSVMGRLTVCLPLKVGVSWEKQLRQGATDQVPFREGGTKVVGAISVDWTIGKMRYQADRKFDRLDGSISSLEETEILGEDADVYVP 397 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig94.17441.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 6 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig94.17441.1 >prot_E-siliculosus-1a_M_contig94.17441.1 ID=prot_E-siliculosus-1a_M_contig94.17441.1|Name=mRNA_E-siliculosus-1a_M_contig94.17441.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=477bp MQKPRGRPTFALLCYYLGAATTTRTLPTAVSGFHHPCAARRVRRRPAGQAback to top mRNA from alignment at E-siliculosus-1a_M_contig94:476601..483046- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig94.17441.1 ID=mRNA_E-siliculosus-1a_M_contig94.17441.1|Name=mRNA_E-siliculosus-1a_M_contig94.17441.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=6446bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig94:476601..483046- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig94:476601..483046- >mRNA_E-siliculosus-1a_M_contig94.17441.1 ID=mRNA_E-siliculosus-1a_M_contig94.17441.1|Name=mRNA_E-siliculosus-1a_M_contig94.17441.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=2862bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig94:476601..483046- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |