mRNA_E-siliculosus-1a_M_contig94.17440.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig94.17440.1 vs. uniprot
Match: D8LN08_ECTSI (Cilia- and flagella-associated protein 418 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN08_ECTSI) HSP 1 Score: 438 bits (1126), Expect = 1.470e-150 Identity = 237/260 (91.15%), Postives = 241/260 (92.69%), Query Frame = 1 Query: 517 AGDGCDLGLPAVTTAPAAVGDGFDSDSSQAQAAVAXXXXXDFDEDSQDGADDSLGLVFSAAPEQVEERTNGINSSLTTTYNNGNDDRSVKDKVTPESPQRHRAEAERRPTITEIASEQTAATIMVMLSAMPGEGRCGGXXXXXXXXXXXXXXXXRCGTVFVGGVATDRGFCASSLSQRACDKLRCTDCNFEVLCFHGRAWDDQTDYMFLRNNVPDTDKLSARLTPCSDSCAYACQCSWQNVKDVRALSPTARPRWACGGH 1296
AGD DLGLP VT AP+AVGDGFDSDSSQAQAAVA DFDEDSQDG DDSLGLVFSAAPE V+ERT+GINS LTTTY+NGNDDRSVKDKVTPESPQRHRAEAERRPTITEIASEQTAATIMV S MPGEGRC G XXXXXXXXXXXXXXRCGTVFVGGVATDRGFCASSLSQRACDKLRCTDCNFEVLCFHGRAWDDQTDYMFLRNNVPDTDKLSARLTPCSDSCAYACQCSWQNVKDVRALSPT RPRWACGGH
Sbjct: 39 AGDDRDLGLPVVTIAPSAVGDGFDSDSSQAQAAVASTVGVDFDEDSQDGVDDSLGLVFSAAPEHVKERTSGINSDLTTTYSNGNDDRSVKDKVTPESPQRHRAEAERRPTITEIASEQTAATIMVTPSTMPGEGRCAGGTXXXXXXXXXXXXXXRCGTVFVGGVATDRGFCASSLSQRACDKLRCTDCNFEVLCFHGRAWDDQTDYMFLRNNVPDTDKLSARLTPCSDSCAYACQCSWQNVKDVRALSPTERPRWACGGH 298
BLAST of mRNA_E-siliculosus-1a_M_contig94.17440.1 vs. uniprot
Match: UPI0018D7E981 (protein C8orf37 homolog isoform X1 n=2 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D7E981) HSP 1 Score: 113 bits (283), Expect = 1.130e-25 Identity = 51/106 (48.11%), Postives = 68/106 (64.15%), Query Frame = 1 Query: 979 RCGTVFVGGVATDRGFCASSLSQRACDKLRCTDCNFEVLCFHGRAWDDQTDYMFLRNNVPDTDKLSARLTPCSDSCAYACQCSWQNVKDVRALSPTARPRWACGGH 1296
RC V++GG A G +S++SQR CD+LRCT C+F+++ F WD DY+F RNNVPD KLSA+L S AYACQC W++VK V + + +W CG H
Sbjct: 108 RCNPVYLGGSADPMGL-SSAVSQRMCDQLRCTSCDFKIVAFDNYEWDSTCDYLFFRNNVPDFKKLSAKLKKRRGSRAYACQCMWRSVKTVSKVEQDLQLKWVCGKH 212
BLAST of mRNA_E-siliculosus-1a_M_contig94.17440.1 vs. uniprot
Match: A0A7N4NSQ5_SARHA (Cilia- and flagella-associated protein 418 n=1 Tax=Sarcophilus harrisii TaxID=9305 RepID=A0A7N4NSQ5_SARHA) HSP 1 Score: 113 bits (282), Expect = 1.530e-25 Identity = 50/106 (47.17%), Postives = 69/106 (65.09%), Query Frame = 1 Query: 979 RCGTVFVGGVATDRGFCASSLSQRACDKLRCTDCNFEVLCFHGRAWDDQTDYMFLRNNVPDTDKLSARLTPCSDSCAYACQCSWQNVKDVRALSPTARPRWACGGH 1296
RC V++GG +T G ++ SQR CD+LRCT C+F VL F WD DY+F RNN+P+ +KL A++T + AYACQCSW+NV+++ L + RW CG H
Sbjct: 107 RCSPVYIGGSSTPCGI-GTNTSQRTCDQLRCTACDFRVLNFDDYIWDKSCDYLFFRNNMPEFNKLKAKMTKRKGTRAYACQCSWRNVEELTDLQTDQQLRWVCGKH 211
BLAST of mRNA_E-siliculosus-1a_M_contig94.17440.1 vs. uniprot
Match: UPI0005C351DA (protein C8orf37 homolog n=1 Tax=Crassostrea gigas TaxID=29159 RepID=UPI0005C351DA) HSP 1 Score: 111 bits (277), Expect = 3.050e-25 Identity = 52/106 (49.06%), Postives = 71/106 (66.98%), Query Frame = 1 Query: 979 RCGTVFVGGVATDRGFCASSLSQRACDKLRCTDCNFEVLCFHGRAWDDQTDYMFLRNNVPDTDKLSARLTPCSDSCAYACQCSWQNVKDVRALSPTARPRWACGGH 1296
+C V++GG + +G A+S SQRACDKLRCT C+F+V F W +TDY+FLRNNVPD +L + LTP + AY CQCS +++KD+ LS + +W CG H
Sbjct: 74 KCFPVYLGGSSCSQGM-ANSFSQRACDKLRCTSCDFKVCSFDNFEWHSETDYLFLRNNVPDFHRLKSNLTPKNGCRAYCCQCSHRSIKDLTQLSDP-QLKWVCGKH 177
BLAST of mRNA_E-siliculosus-1a_M_contig94.17440.1 vs. uniprot
Match: G3Q0Q9_GASAC (Cilia- and flagella-associated protein 418 n=2 Tax=Gasterosteus aculeatus TaxID=69293 RepID=G3Q0Q9_GASAC) HSP 1 Score: 112 bits (279), Expect = 3.480e-25 Identity = 56/107 (52.34%), Postives = 67/107 (62.62%), Query Frame = 1 Query: 979 RCGTVFVGGVATDRGFCASSLSQRACDKLRCTDCNFEVLCFHGRAWDDQTDYMFLR-NNVPDTDKLSARLTPCSDSCAYACQCSWQNVKDVRALSPTARPRWACGGH 1296
RC VFVGG A G ++ S+R+CD+LRCT C+F VL F RAWD DY+FLR NNVPD +KL ARL S A+ACQCSW + + L R RW CG H
Sbjct: 102 RCCPVFVGGSAVASGV-GTATSKRSCDQLRCTSCDFRVLTFDDRAWDPSCDYLFLRRNNVPDREKLGARLRRSGGSRAFACQCSWFSADEPTDLREQPRLRWVCGKH 207
BLAST of mRNA_E-siliculosus-1a_M_contig94.17440.1 vs. uniprot
Match: A0A1S3J1B3_LINUN (Cilia- and flagella-associated protein 418 n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3J1B3_LINUN) HSP 1 Score: 111 bits (277), Expect = 3.680e-25 Identity = 49/106 (46.23%), Postives = 69/106 (65.09%), Query Frame = 1 Query: 979 RCGTVFVGGVATDRGFCASSLSQRACDKLRCTDCNFEVLCFHGRAWDDQTDYMFLRNNVPDTDKLSARLTPCSDSCAYACQCSWQNVKDVRALSPTARPRWACGGH 1296
RC V++G +G AS++++R+CDKLRCTDC+F+++ F W TDY+FLRNNVPD KL +L P + AYACQC W+NV +V+ + +W CG H
Sbjct: 80 RCYPVYLGNSTCAQGM-ASTMNKRSCDKLRCTDCDFKIVTFDNFQWAASTDYLFLRNNVPDFKKLQKQLDPKNGMRAYACQCKWRNVSEVKDVKTDQDLKWVCGRH 184
BLAST of mRNA_E-siliculosus-1a_M_contig94.17440.1 vs. uniprot
Match: A0A667Y5M5_9TELE (Cilia- and flagella-associated protein 418 n=1 Tax=Myripristis murdjan TaxID=586833 RepID=A0A667Y5M5_9TELE) HSP 1 Score: 110 bits (276), Expect = 1.020e-24 Identity = 51/106 (48.11%), Postives = 67/106 (63.21%), Query Frame = 1 Query: 979 RCGTVFVGGVATDRGFCASSLSQRACDKLRCTDCNFEVLCFHGRAWDDQTDYMFLRNNVPDTDKLSARLTPCSDSCAYACQCSWQNVKDVRALSPTARPRWACGGH 1296
+C VF+GG AT G ++LS R+CD+LRCT C+F VL F WD DY+FLRNN+PD+ KL A+L AYACQCSW + +++ L + RW CG H
Sbjct: 105 KCCPVFLGGSATTNGV-GTALSNRSCDQLRCTSCDFRVLMFDDYEWDSSCDYLFLRNNMPDSQKLRAKLKRRRGLRAYACQCSWFSARELADLKQQPQLRWVCGKH 209
BLAST of mRNA_E-siliculosus-1a_M_contig94.17440.1 vs. uniprot
Match: A0A1L8FZM7_XENLA (Cilia- and flagella-associated protein 418 n=1 Tax=Xenopus laevis TaxID=8355 RepID=A0A1L8FZM7_XENLA) HSP 1 Score: 110 bits (274), Expect = 1.450e-24 Identity = 47/106 (44.34%), Postives = 71/106 (66.98%), Query Frame = 1 Query: 979 RCGTVFVGGVATDRGFCASSLSQRACDKLRCTDCNFEVLCFHGRAWDDQTDYMFLRNNVPDTDKLSARLTPCSDSCAYACQCSWQNVKDVRALSPTARPRWACGGH 1296
+CG V+V G + G +S+S+RACD+LRCT C+F V+ F R WD+ DY+F RN++PD KL +L + AYACQCSW++V+++ ++ ++ RW CG H
Sbjct: 93 KCGPVYVAGSSIPFGI-GTSISERACDQLRCTACDFTVMIFDDRQWDESCDYLFFRNSMPDLSKLQPKLKRKKGARAYACQCSWKSVQELTNITTYSQLRWVCGKH 197
BLAST of mRNA_E-siliculosus-1a_M_contig94.17440.1 vs. uniprot
Match: UPI0018892466 (protein C8orf37 homolog n=1 Tax=Pungitius pungitius TaxID=134920 RepID=UPI0018892466) HSP 1 Score: 109 bits (273), Expect = 2.570e-24 Identity = 52/106 (49.06%), Postives = 64/106 (60.38%), Query Frame = 1 Query: 979 RCGTVFVGGVATDRGFCASSLSQRACDKLRCTDCNFEVLCFHGRAWDDQTDYMFLRNNVPDTDKLSARLTPCSDSCAYACQCSWQNVKDVRALSPTARPRWACGGH 1296
+C VFVGG + G ++ S+R+CD+LRCT C+F VL F RAWD DY+FLRNN PD +KL ARL S A+ACQCSW + L RW CG H
Sbjct: 103 KCCPVFVGGSSVPSGV-GTATSKRSCDQLRCTSCDFRVLTFDDRAWDSSCDYLFLRNNAPDREKLGARLRRSGGSRAFACQCSWFSADGPTDLRERPGLRWVCGKH 207
BLAST of mRNA_E-siliculosus-1a_M_contig94.17440.1 vs. uniprot
Match: A0A061SDC5_9CHLO (Cilia- and flagella-associated protein 418 n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061SDC5_9CHLO) HSP 1 Score: 105 bits (263), Expect = 3.560e-24 Identity = 42/81 (51.85%), Postives = 54/81 (66.67%), Query Frame = 1 Query: 1054 CDKLRCTDCNFEVLCFHGRAWDDQTDYMFLRNNVPDTDKLSARLTPCSDSCAYACQCSWQNVKDVRALSPTARPRWACGGH 1296
CDK+RCT C+ +V+CF G++W + DYMFLRN PD KLS +L C +S AY+CQCSW N + R L + RW C GH
Sbjct: 21 CDKMRCTRCDLKVICFPGKSWKQEVDYMFLRNCYPDESKLSGKLRKCEESMAYSCQCSWLNCTEARRLGISDDIRWVCAGH 101 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig94.17440.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig94.17440.1 >prot_E-siliculosus-1a_M_contig94.17440.1 ID=prot_E-siliculosus-1a_M_contig94.17440.1|Name=mRNA_E-siliculosus-1a_M_contig94.17440.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=433bp MDLSIDDLLEEVEGALEEGSCPRRSSKGDRHQPPCAATECCPPLLCEDPPback to top mRNA from alignment at E-siliculosus-1a_M_contig94:471714..475029+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig94.17440.1 ID=mRNA_E-siliculosus-1a_M_contig94.17440.1|Name=mRNA_E-siliculosus-1a_M_contig94.17440.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=3316bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig94:471714..475029+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig94:471714..475029+ >mRNA_E-siliculosus-1a_M_contig94.17440.1 ID=mRNA_E-siliculosus-1a_M_contig94.17440.1|Name=mRNA_E-siliculosus-1a_M_contig94.17440.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=2598bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig94:471714..475029+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |